[med-svn] [Git][med-team/python-ruffus][master] 9 commits: New upstream version 3.0.0

[Karsten Schöke (@karso)]

Karsten Schöke pushed to branch master at Debian Med / python-ruffus


Commits:
2f16f7b2 by Karsten Schöke at 2026-10-26T13:19:16+01:00
New upstream version 3.0.0
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577e52d4 by Karsten Schöke at 2026-10-26T19:01:26+01:00
Update upstream source from tag 'upstream/3.0.0'

Update to upstream version '3.0.0'
with Debian dir 64c6130a517d867cf5793f9355a7eb259dfa4bd8

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6a447f2b by Karsten Schöke at 2026-10-26T19:04:20+01:00
remove obsolete patches
 - py313-regex-compilation-error-check.patch
 - reasonable-multiprocessing.patch
 - sphinx4.patch

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11a84be8 by Karsten Schöke at 2026-10-26T19:04:44+01:00
Standards-Version: 4.7.4 (routine-update)

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0df1fbf8 by Karsten Schöke at 2026-10-26T19:04:46+01:00
Changes made by cme

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7e87b019 by Karsten Schöke at 2026-10-26T19:04:48+01:00
Remove trailing whitespace in debian/changelog (routine-update)

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04a8dd90 by Karsten Schöke at 2026-10-26T19:05:12+01:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)

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eb865ef4 by Karsten Schöke at 2026-10-26T19:05:17+01:00
Set upstream metadata fields: Repository.

Changes-By: lintian-brush

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fb7269d3 by Karsten Schöke at 2026-10-26T19:07:52+01:00
routine-update: Ready to upload to unstable

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53 changed files:

- + .github/workflows/tests.yml
- − .travis.yml
- CHANGES.TXT
- README.rst
- debian/changelog
- debian/control
- − debian/patches/py313-regex-compilation-error-check.patch
- − debian/patches/reasonable-multiprocessing.patch
- debian/patches/series
- − debian/patches/sphinx4.patch
- debian/upstream/metadata
- doc/conf.py
- doc/decorators/decorators.rst
- doc/decorators/jobs_limit.rst
- + doc/decorators/run_in_main_process.rst
- doc/examples/bioinformatics/index.rst
- doc/implementation_notes.rst
- doc/installation.rst
- doc/release.rst
- doc/todo.rst
- doc/tutorials/new_tutorial/checkpointing.rst
- + pyproject.toml
- ruffus/__init__.py
- ruffus/drmaa_wrapper.py
- ruffus/file_name_parameters.py
- ruffus/ruffus_utility.py
- ruffus/ruffus_version.py
- ruffus/task.py
- ruffus/test/Makefile
- ruffus/test/check_subpipeline_cmdline.py
- + ruffus/test/run_tests.py
- ruffus/test/test_N_x_M_and_collate.py
- ruffus/test/test_active_if.py
- ruffus/test/test_combinatorics.py
- + ruffus/test/test_drmaa_wrapper_retries.py
- ruffus/test/test_drmaa_wrapper_run_job_locally.py
- ruffus/test/test_exceptions.py
- ruffus/test/test_file_name_parameters.py
- ruffus/test/test_filesre_split_and_combine.py
- + ruffus/test/test_history_paths.py
- + ruffus/test/test_keyword_only_checksums.py
- ruffus/test/test_newstyle_combinatorics.py
- ruffus/test/test_pausing.py
- ruffus/test/test_posttask_merge.py
- ruffus/test/test_ruffus_utility.py
- + ruffus/test/test_run_in_main_process.py
- ruffus/test/test_split_and_combine.py
- + ruffus/test/test_split_keyword_arguments.py
- ruffus/test/test_suffix_output_dir.py
- ruffus/test/test_tutorial7.py
- ruffus/test/test_with_logger.py
- setup.py
- tox.ini


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/compare/5e32825efdf29e1d4cfd04aabf19c829f8ce8aa2...fb7269d33e778668e102ee21913a3a7d6056ca2f

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View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/compare/5e32825efdf29e1d4cfd04aabf19c829f8ce8aa2...fb7269d33e778668e102ee21913a3a7d6056ca2f
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