[med-svn] [Git][med-team/python-ruffus][upstream] New upstream version 3.0.0

[Karsten Schöke (@karso)]

Karsten Schöke pushed to branch upstream at Debian Med / python-ruffus


Commits:
2f16f7b2 by Karsten Schöke at 2026-10-26T13:19:16+01:00
New upstream version 3.0.0
- - - - -


46 changed files:

- + .github/workflows/tests.yml
- − .travis.yml
- CHANGES.TXT
- README.rst
- doc/conf.py
- doc/decorators/decorators.rst
- doc/decorators/jobs_limit.rst
- + doc/decorators/run_in_main_process.rst
- doc/examples/bioinformatics/index.rst
- doc/implementation_notes.rst
- doc/installation.rst
- doc/release.rst
- doc/todo.rst
- doc/tutorials/new_tutorial/checkpointing.rst
- + pyproject.toml
- ruffus/__init__.py
- ruffus/drmaa_wrapper.py
- ruffus/file_name_parameters.py
- ruffus/ruffus_utility.py
- ruffus/ruffus_version.py
- ruffus/task.py
- ruffus/test/Makefile
- ruffus/test/check_subpipeline_cmdline.py
- + ruffus/test/run_tests.py
- ruffus/test/test_N_x_M_and_collate.py
- ruffus/test/test_active_if.py
- ruffus/test/test_combinatorics.py
- + ruffus/test/test_drmaa_wrapper_retries.py
- ruffus/test/test_drmaa_wrapper_run_job_locally.py
- ruffus/test/test_exceptions.py
- ruffus/test/test_file_name_parameters.py
- ruffus/test/test_filesre_split_and_combine.py
- + ruffus/test/test_history_paths.py
- + ruffus/test/test_keyword_only_checksums.py
- ruffus/test/test_newstyle_combinatorics.py
- ruffus/test/test_pausing.py
- ruffus/test/test_posttask_merge.py
- ruffus/test/test_ruffus_utility.py
- + ruffus/test/test_run_in_main_process.py
- ruffus/test/test_split_and_combine.py
- + ruffus/test/test_split_keyword_arguments.py
- ruffus/test/test_suffix_output_dir.py
- ruffus/test/test_tutorial7.py
- ruffus/test/test_with_logger.py
- setup.py
- tox.ini


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/commit/2f16f7b2ac4d771fc8760011d33e83f7c1208032

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View it on GitLab: https://salsa.debian.org/med-team/python-ruffus/-/commit/2f16f7b2ac4d771fc8760011d33e83f7c1208032
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