[med-svn] [Git][med-team/embassy-domainatrix][master] 10 commits: d/watch: Version=5, Untrackable
Andreas Tille (@tille)
gitlab at salsa.debian.org
Tue Sep 15 16:51:47 BST 2026
Andreas Tille pushed to branch master at Debian Med / embassy-domainatrix
Commits:
8bd17450 by Andreas Tille at 2026-09-15T14:08:12+02:00
d/watch: Version=5, Untrackable
- - - - -
d48ce296 by Andreas Tille at 2026-09-15T17:46:35+02:00
Build-Depends: s/default-libmysqlclient-dev/libmariadb-dev-compat/ Closes: #1137443
- - - - -
85f827ff by Andreas Tille at 2026-09-15T17:47:04+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
f6740020 by Andreas Tille at 2026-09-15T17:48:08+02:00
Changes made by cme
- - - - -
c47e6bef by Andreas Tille at 2026-09-15T17:48:11+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
4d33b625 by Andreas Tille at 2026-09-15T16:48:12+01:00
Replace FSF postal address with a reference to https://www.gnu.org/licenses/.
Changes-By: lintian-brush
Fixes: lintian: source: old-fsf-address-in-copyright-file
See-also: https://lintian.debian.org/tags/old-fsf-address-in-copyright-file.html
- - - - -
71b3d925 by Andreas Tille at 2026-09-15T16:48:16+01:00
Remove redundant relation in debian/control.
Changes-By: lintian-brush
Fixes: lintian: embassy-domainatrix binary: redundant-control-relation (in section for embassy-domainatrix) Depends emboss-lib
See-also: https://lintian.debian.org/tags/redundant-control-relation.html
- - - - -
2023f8aa by Andreas Tille at 2026-09-15T17:48:21+02:00
debputy lint --auto-fix (routine-update)
- - - - -
060dd8b5 by Andreas Tille at 2026-09-15T17:49:18+02:00
routine-update: Ready to upload to unstable
- - - - -
22f3a2d9 by Andreas Tille at 2026-09-15T17:51:30+02:00
Add lrc.config
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/lrc.config
- debian/salsa-ci.yml
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,19 @@
+embassy-domainatrix (0.1.660-6) unstable; urgency=medium
+
+ * d/watch: Version=5, Untrackable
+ * Build-Depends: s/default-libmysqlclient-dev/libmariadb-dev-compat/
+ Closes: #1137443
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * Replace FSF postal address with a reference to
+ https://www.gnu.org/licenses/.
+ * Remove redundant relation in debian/control.
+ * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Tue, 15 Sep 2026 17:48:23 +0200
+
embassy-domainatrix (0.1.660-5) unstable; urgency=medium
* Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit
=====================================
debian/control
=====================================
@@ -1,30 +1,32 @@
Source: embassy-domainatrix
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
+Uploaders:
+ Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- architecture-is-64-bit,
- emboss-lib,
- libx11-dev,
- libgd-dev,
- default-libmysqlclient-dev,
- libpq-dev
-Standards-Version: 4.6.2
+Build-Depends:
+ debhelper-compat (= 14),
+ architecture-is-64-bit,
+ emboss-lib,
+ libx11-dev,
+ libgd-dev,
+ libmariadb-dev-compat,
+ libpq-dev,
Vcs-Browser: https://salsa.debian.org/med-team/embassy-domainatrix
Vcs-Git: https://salsa.debian.org/med-team/embassy-domainatrix.git
Homepage: https://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMAINATRIX
-Rules-Requires-Root: no
Package: embassy-domainatrix
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- emboss-lib,
- emboss-lib (<< 6.6.1~)
-Recommends: emboss
-Suggests: embassy
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+ emboss-lib (<< 6.6.1~),
+Recommends:
+ emboss,
+Suggests:
+ embassy,
Description: Extra EMBOSS commands to handle domain classification file
The DOMAINATRIX programs were developed by Jon Ison and colleagues at MRC HGMP
for their protein domain research. They are included as an EMBASSY package as
=====================================
debian/copyright
=====================================
@@ -28,8 +28,7 @@ License: GPL-2+
GNU General Public License for more details.
.
You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ along with this program. If not, see <https://www.gnu.org/licenses/>.
.
On Debian systems, the complete text of the GNU General Public License
version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
=====================================
debian/lrc.config
=====================================
@@ -0,0 +1,12 @@
+aclocal.m4
+configure
+INSTALL
+install-sh
+ltmain.sh
+m4/libtool.m4
+m4/lt~obsolete.m4
+m4/ltoptions.m4
+m4/ltsugar.m4
+m4/ltversion.m4
+m4/mysql.m4
+m4/postgresql.m4
=====================================
debian/salsa-ci.yml
=====================================
@@ -1,4 +1,6 @@
---
include:
- - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
- - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/recipes/debian.yml
+
+test-uscan:
+ allow_failure: true
=====================================
debian/watch
=====================================
@@ -1,3 +1,6 @@
-version=4
-opts=dversionmangle=s/\+\d+$// \
- ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-(.*)\.tar\.gz
+Version: 5
+Untrackable: Seems that ftp mirror is offline meanwhile
+
+Source: ftp://emboss.open-bio.org/pub/EMBOSS/
+Matching-Pattern: DOMAINATRIX-(.*)\.tar\.gz
+Dversion-Mangle: s/\+\d+$//
View it on GitLab: https://salsa.debian.org/med-team/embassy-domainatrix/-/compare/b61ce364d1916e669f56ffc2be45ec1fc76d1ea6...22f3a2d9b2a671992cb843058a9094f09850c38a
--
View it on GitLab: https://salsa.debian.org/med-team/embassy-domainatrix/-/compare/b61ce364d1916e669f56ffc2be45ec1fc76d1ea6...22f3a2d9b2a671992cb843058a9094f09850c38a
You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20260915/b12c1b95/attachment-0001.htm>
More information about the debian-med-commit
mailing list