[med-svn] [Git][med-team/embassy-domalign][master] 10 commits: d/watch: version=5; Build-Depends:...
Andreas Tille (@tille)
gitlab at salsa.debian.org
Wed Sep 16 08:23:41 BST 2026
Andreas Tille pushed to branch master at Debian Med / embassy-domalign
Commits:
b72d8dcd by Andreas Tille at 2026-09-16T09:19:05+02:00
d/watch: version=5; Build-Depends: s/default-libmysqlclient-dev/libmariadb-dev-compat/ Closes: #1137457
- - - - -
356acf0d by Andreas Tille at 2026-09-16T09:19:43+02:00
d/salsa-ci.yml: Do not test i386
- - - - -
f7329965 by Andreas Tille at 2026-09-16T09:20:08+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
58f54464 by Andreas Tille at 2026-09-16T09:20:32+02:00
Changes made by cme
- - - - -
fd719225 by Andreas Tille at 2026-09-16T09:20:36+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
fe174ae0 by Andreas Tille at 2026-09-16T08:20:36+01:00
Replace FSF postal address with a reference to https://www.gnu.org/licenses/.
Changes-By: lintian-brush
Fixes: lintian: source: old-fsf-address-in-copyright-file
See-also: https://lintian.debian.org/tags/old-fsf-address-in-copyright-file.html
- - - - -
48664f67 by Andreas Tille at 2026-09-16T08:20:40+01:00
Remove redundant relation in debian/control.
Changes-By: lintian-brush
Fixes: lintian: embassy-domalign binary: redundant-control-relation (in section for embassy-domalign) Depends emboss-lib
See-also: https://lintian.debian.org/tags/redundant-control-relation.html
- - - - -
9e940a74 by Andreas Tille at 2026-09-16T09:20:43+02:00
debputy lint --auto-fix (routine-update)
- - - - -
b69d4795 by Andreas Tille at 2026-09-16T09:21:55+02:00
routine-update: Ready to upload to unstable
- - - - -
2a5ecfe7 by Andreas Tille at 2026-09-16T09:22:59+02:00
Add d/lrc.config
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/lrc.config
- debian/salsa-ci.yml
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,20 @@
+embassy-domalign (0.1.660-6) unstable; urgency=medium
+
+ * d/watch: version=5
+ * Build-Depends: s/default-libmysqlclient-dev/libmariadb-dev-compat/
+ Closes: #1137457
+ * d/salsa-ci.yml: Do not test i386
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * Replace FSF postal address with a reference to
+ https://www.gnu.org/licenses/.
+ * Remove redundant relation in debian/control.
+ * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Wed, 16 Sep 2026 09:20:44 +0200
+
embassy-domalign (0.1.660-5) unstable; urgency=medium
* Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit
=====================================
debian/control
=====================================
@@ -1,30 +1,32 @@
Source: embassy-domalign
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
+Uploaders:
+ Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- architecture-is-64-bit,
- emboss-lib,
- libx11-dev,
- libgd-dev,
- default-libmysqlclient-dev,
- libpq-dev
-Standards-Version: 4.6.2
+Build-Depends:
+ debhelper-compat (= 14),
+ architecture-is-64-bit,
+ emboss-lib,
+ libx11-dev,
+ libgd-dev,
+ libmariadb-dev-compat,
+ libpq-dev,
Vcs-Browser: https://salsa.debian.org/med-team/embassy-domalign
Vcs-Git: https://salsa.debian.org/med-team/embassy-domalign.git
Homepage: https://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN
-Rules-Requires-Root: no
Package: embassy-domalign
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- emboss-lib,
- emboss-lib (<< 6.6.1~)
-Recommends: emboss
-Suggests: embassy
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+ emboss-lib (<< 6.6.1~),
+Recommends:
+ emboss,
+Suggests:
+ embassy,
Description: Extra EMBOSS commands for protein domain alignment
The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP
for their protein domain research. They are included as an EMBASSY package as
=====================================
debian/copyright
=====================================
@@ -26,8 +26,7 @@ License: GPL-2+
GNU General Public License for more details.
.
You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ along with this program. If not, see <https://www.gnu.org/licenses/>.
.
On Debian systems, the complete text of the GNU General Public License version
2 can be found in ‘/usr/share/common-licenses/GPL-2’.
=====================================
debian/lrc.config
=====================================
@@ -0,0 +1,12 @@
+aclocal.m4
+configure
+INSTALL
+install-sh
+ltmain.sh
+m4/libtool.m4
+m4/lt~obsolete.m4
+m4/ltoptions.m4
+m4/ltsugar.m4
+m4/ltversion.m4
+m4/mysql.m4
+m4/postgresql.m4
=====================================
debian/salsa-ci.yml
=====================================
@@ -1,4 +1,10 @@
---
include:
- - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
- - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/recipes/debian.yml
+
+variables:
+# i386 is implicitly excluded due to Build-Depends
+ SALSA_CI_DISABLE_BUILD_PACKAGE_I386: 1
+
+test-uscan:
+ allow_failure: true
=====================================
debian/watch
=====================================
@@ -1,3 +1,5 @@
-version=4
-opts=dversionmangle=s/\+\d+$// \
- ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-(.*)\.tar\.gz
+Version: 5
+
+Source: ftp://emboss.open-bio.org/pub/EMBOSS/
+Matching-Pattern: DOMALIGN-(.*)\.tar\.gz
+Dversion-Mangle: s/\+\d+$//
View it on GitLab: https://salsa.debian.org/med-team/embassy-domalign/-/compare/21db923c35814fee9e69e64938b64746aae41962...2a5ecfe764128590f0c172fbd2cebd95f63c23e4
--
View it on GitLab: https://salsa.debian.org/med-team/embassy-domalign/-/compare/21db923c35814fee9e69e64938b64746aae41962...2a5ecfe764128590f0c172fbd2cebd95f63c23e4
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