[med-svn] [Git][med-team/embassy-domsearch][master] 11 commits: Add d/lrc.config
Andreas Tille (@tille)
gitlab at salsa.debian.org
Wed Sep 16 08:41:31 BST 2026
Andreas Tille pushed to branch master at Debian Med / embassy-domsearch
Commits:
41fb8356 by Andreas Tille at 2026-09-16T09:24:37+02:00
Add d/lrc.config
- - - - -
19a7c825 by Andreas Tille at 2026-09-16T09:25:47+02:00
d/watch: version=5
- - - - -
63c86534 by Andreas Tille at 2026-09-16T09:26:38+02:00
Build-Depends: s/default-libmysqlclient-dev/libmariadb-dev-compat/ Closes: #1137455
- - - - -
3127d162 by Andreas Tille at 2026-09-16T09:27:29+02:00
Add d/salsa-ci.yml
- - - - -
286c78de by Andreas Tille at 2026-09-16T09:27:47+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
acc20cda by Andreas Tille at 2026-09-16T09:28:21+02:00
Changes made by cme
- - - - -
297a7816 by Andreas Tille at 2026-09-16T09:28:25+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
f3bfd2cc by Andreas Tille at 2026-09-16T08:28:25+01:00
Replace FSF postal address with a reference to https://www.gnu.org/licenses/.
Changes-By: lintian-brush
Fixes: lintian: source: old-fsf-address-in-copyright-file
See-also: https://lintian.debian.org/tags/old-fsf-address-in-copyright-file.html
- - - - -
b19f43e2 by Andreas Tille at 2026-09-16T08:28:26+01:00
Remove redundant relation in debian/control.
Changes-By: lintian-brush
Fixes: lintian: embassy-domsearch binary: redundant-control-relation (in section for embassy-domsearch) Depends emboss-lib
See-also: https://lintian.debian.org/tags/redundant-control-relation.html
- - - - -
a5264321 by Andreas Tille at 2026-09-16T09:28:29+02:00
debputy lint --auto-fix (routine-update)
- - - - -
ce9f0ef9 by Andreas Tille at 2026-09-16T09:29:38+02:00
routine-update: Ready to upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/lrc.config
- + debian/salsa-ci.yml
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,21 @@
+embassy-domsearch (1:0.1.660-5) unstable; urgency=medium
+
+ * Add d/lrc.config
+ * d/watch: version=5
+ * Build-Depends: s/default-libmysqlclient-dev/libmariadb-dev-compat/
+ Closes: #1137455
+ * Add d/salsa-ci.yml
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * Replace FSF postal address with a reference to
+ https://www.gnu.org/licenses/.
+ * Remove redundant relation in debian/control.
+ * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Wed, 16 Sep 2026 09:28:30 +0200
+
embassy-domsearch (1:0.1.660-4) unstable; urgency=medium
* Build-Depends: architecture-is-64-bit (to address ROM bug for 32 bit
=====================================
debian/control
=====================================
@@ -1,30 +1,32 @@
Source: embassy-domsearch
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
+Uploaders:
+ Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- architecture-is-64-bit,
- emboss-lib,
- libx11-dev,
- libgd-dev,
- default-libmysqlclient-dev,
- libpq-dev
-Standards-Version: 4.6.2
+Build-Depends:
+ debhelper-compat (= 14),
+ architecture-is-64-bit,
+ emboss-lib,
+ libx11-dev,
+ libgd-dev,
+ libmariadb-dev-compat,
+ libpq-dev,
Vcs-Browser: https://salsa.debian.org/med-team/embassy-domsearch
Vcs-Git: https://salsa.debian.org/med-team/embassy-domsearch.git
Homepage: https://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
-Rules-Requires-Root: no
Package: embassy-domsearch
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- emboss-lib,
- emboss-lib (<< 6.6.1~)
-Recommends: emboss
-Suggests: embassy
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+ emboss-lib (<< 6.6.1~),
+Recommends:
+ emboss,
+Suggests:
+ embassy,
Description: Extra EMBOSS commands to search for protein domains
The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP
for their protein domain research. They are included as an EMBASSY package as
=====================================
debian/copyright
=====================================
@@ -24,9 +24,8 @@ License: GPL-2+
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <https://www.gnu.org/licenses/>.
.
On Debian systems, the complete text of the GNU General Public License
version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
=====================================
debian/lrc.config
=====================================
@@ -0,0 +1,12 @@
+aclocal.m4
+configure
+INSTALL
+install-sh
+ltmain.sh
+m4/libtool.m4
+m4/lt~obsolete.m4
+m4/ltoptions.m4
+m4/ltsugar.m4
+m4/ltversion.m4
+m4/mysql.m4
+m4/postgresql.m4
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,10 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/recipes/debian.yml
+
+variables:
+# i386 is implicitly excluded due to Build-Depends
+ SALSA_CI_DISABLE_BUILD_PACKAGE_I386: 1
+
+test-uscan:
+ allow_failure: true
=====================================
debian/watch
=====================================
@@ -1,3 +1,5 @@
-version=4
-opts=dversionmangle=s/\+\+\d+// \
- ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-(.*).tar.gz
+Version: 5
+
+Source: ftp://emboss.open-bio.org/pub/EMBOSS/
+Matching-Pattern: DOMSEARCH-(.*).tar.gz
+Dversion-Mangle: s/\+\+\d+//
View it on GitLab: https://salsa.debian.org/med-team/embassy-domsearch/-/compare/5011394e178777164aa9cb21b3cf62e1c70acb30...ce9f0ef982ce114f9ec0515aa592e44a3bd76b30
--
View it on GitLab: https://salsa.debian.org/med-team/embassy-domsearch/-/compare/5011394e178777164aa9cb21b3cf62e1c70acb30...ce9f0ef982ce114f9ec0515aa592e44a3bd76b30
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