[med-svn] [Git][med-team/qcat][master] 4 commits: patch-out usage of pkg_resources (Closes: #1147914)

[Alexandre Detiste (@detiste-guest)]

Alexandre Detiste pushed to branch master at Debian Med / qcat


Commits:
08dc8658 by Alexandre Detiste at 2026-09-22T23:08:46+02:00
patch-out usage of pkg_resources (Closes: #1147914)

- - - - -
612bf062 by Alexandre Detiste at 2026-09-22T22:10:36+01:00
Remove redundant Priority: optional from source stanza.

Changes-By: lintian-brush
Fixes: lintian: source: redundant-priority-optional-field
See-also: https://lintian.debian.org/tags/redundant-priority-optional-field.html

- - - - -
61277da0 by Alexandre Detiste at 2026-09-22T22:10:36+01:00
Update standards version to 4.7.4, no changes needed.

Upgrade checklist verified:
 4.7.3 → 4.7.4:
  * Package is not in non-free-firmware

Changes-By: lintian-brush
Fixes: lintian: source: out-of-date-standards-version 4.7.2 (released 2025-02-27) (current is 4.7.4.1)
See-also: https://lintian.debian.org/tags/out-of-date-standards-version.html

- - - - -
ce59daf1 by Alexandre Detiste at 2026-09-22T23:11:24+02:00
release

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4 changed files:

- debian/changelog
- debian/control
- + debian/patches/pkg_resources.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+qcat (1.1.0-10) unstable; urgency=medium
+
+  * Team upload.
+  * Patch-out usage of pkg_resources (Closes: #1147914)
+  * Remove redundant Priority: optional from source stanza.
+  * Update standards version to 4.7.4, no changes needed.
+
+ -- Alexandre Detiste <tchet at debian.org>  Tue, 22 Sep 2026 23:10:56 +0200
+
 qcat (1.1.0-9) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -2,7 +2,6 @@ Source: qcat
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
-Priority: optional
 Build-Depends: debhelper-compat (= 13),
                dh-sequence-python3,
                python3,
@@ -13,7 +12,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-biopython <!nocheck>,
                python3-parasail <!nocheck>,
                python3-yaml <!nocheck>
-Standards-Version: 4.7.2
+Standards-Version: 4.7.4
 Vcs-Browser: https://salsa.debian.org/med-team/qcat
 Vcs-Git: https://salsa.debian.org/med-team/qcat.git
 Homepage: https://github.com/nanoporetech/qcat


=====================================
debian/patches/pkg_resources.patch
=====================================
@@ -0,0 +1,39 @@
+--- a/qcat/adapters.py
++++ b/qcat/adapters.py
+@@ -4,7 +4,7 @@
+ import os
+ import logging
+ 
+-import pkg_resources
++import importlib.resources
+ import yaml
+ from collections import namedtuple
+ 
+@@ -69,7 +69,7 @@
+ 
+ RESOURCE_PACKAGE = __name__
+ KIT_FOLDER = '/'.join(('resources', 'kits'))
+-KIT_FOLDER = pkg_resources.resource_filename(__name__, KIT_FOLDER)
++KIT_FOLDER = str(importlib.resources.files(__name__) / KIT_FOLDER)
+ 
+ 
+ def read_adapter_layout(filename):
+--- a/qcat/scanner_brill.py
++++ b/qcat/scanner_brill.py
+@@ -1,6 +1,6 @@
+ import os
+ 
+-import pkg_resources
++import importlib.resources
+ 
+ import numpy as np
+ 
+@@ -72,7 +72,7 @@
+         if os.path.exists(path):
+             return path
+         else:
+-            resource_model = pkg_resources.resource_filename(__name__, os.path.join("resources/models", path))
++            resource_model = str(importlib.resources.files(__name__) / os.path.join("resources/models", path))
+             if os.path.exists(resource_model):
+                 return resource_model
+             else:


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 yaml_safe_load.patch
 remove_six.patch
 setup.patch
+pkg_resources.patch



View it on GitLab: https://salsa.debian.org/med-team/qcat/-/compare/514d6fa447ca04172db4cc300aae1e12c2494c9c...ce59daf121176a20dfc0fbc4cbcd1b7245a1e3b1

-- 
View it on GitLab: https://salsa.debian.org/med-team/qcat/-/compare/514d6fa447ca04172db4cc300aae1e12c2494c9c...ce59daf121176a20dfc0fbc4cbcd1b7245a1e3b1
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