[med-svn] [Git][med-team/mcl][master] 10 commits: Standards-Version: 4.7.4 (routine-update)
Andreas Tille (@tille)
gitlab at salsa.debian.org
Wed Sep 23 09:50:00 BST 2026
Andreas Tille pushed to branch master at Debian Med / mcl
Commits:
50914782 by Andreas Tille at 2026-09-23T10:30:36+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
2208e569 by Andreas Tille at 2026-09-23T10:31:37+02:00
Changes made by cme
- - - - -
5dcff066 by Andreas Tille at 2026-09-23T10:31:40+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
c0146f81 by Andreas Tille at 2026-09-23T09:31:47+01:00
Rely on pre-initialized dpkg-architecture variables.
Changes-By: lintian-brush
- - - - -
388a78ab by Andreas Tille at 2026-09-23T09:31:47+01:00
Reformat the Last-Update date as ISO YYYY-MM-DD.
Changes-By: lintian-brush
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/05-manual-what-is.patch]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/spelling.patch]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/ansic.patch]
See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html
- - - - -
cafea8fe by Andreas Tille at 2026-09-23T09:31:51+01:00
Add RFP bugs in 20011012-1.
Changes-By: lintian-brush
Fixes: lintian: source: initial-upload-closes-no-bugs
See-also: https://lintian.debian.org/tags/initial-upload-closes-no-bugs.html
- - - - -
5cee8f95 by Andreas Tille at 2026-09-23T10:31:55+02:00
debputy lint --auto-fix (routine-update)
- - - - -
1b908895 by Andreas Tille at 2026-09-23T10:32:51+02:00
Close bug
- - - - -
e05a79db by Andreas Tille at 2026-09-23T10:43:19+02:00
Section of libmcl-ocaml-dev is ocaml
- - - - -
1df83ad4 by Andreas Tille at 2026-09-23T10:45:00+02:00
Upload to unstable
- - - - -
7 changed files:
- debian/changelog
- debian/control
- debian/patches/05-manual-what-is.patch
- debian/patches/ansic.patch
- debian/patches/spelling.patch
- debian/rules
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-mcl (1:22-282+ds-5) UNRELEASED; urgency=medium
+mcl (1:22-282+ds-5) unstable; urgency=medium
* Re-enable OCaml bindings for the current MCL version and ship them in
the new binary package libmcl-ocaml-dev.
@@ -12,8 +12,17 @@ mcl (1:22-282+ds-5) UNRELEASED; urgency=medium
* d/copyright: rcl/* is only GPL-3
* Add d/lrc.config
* i386 is explicitly excluded by Build-Depends: architecture-is-64-bit
-
- -- Andreas Tille <tille at debian.org> Mon, 21 Sep 2026 00:00:00 +0200
+ Closes: #1091257
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * Rely on pre-initialized dpkg-architecture variables.
+ * Reformat the Last-Update date as ISO YYYY-MM-DD.
+ * Add RFP bugs in 20011012-1.
+ * debputy lint --auto-fix (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Wed, 23 Sep 2026 10:43:30 +0200
mcl (1:22-282+ds-4) unstable; urgency=medium
@@ -556,6 +565,6 @@ mcl (20011211-1) unstable; urgency=low
mcl (20011012-1) unstable; urgency=low
- * Initial Release.
+ * Initial Release. Closes: #176115
-- Joost van Baal <joostvb at debian.org> Fri, 12 Oct 2001 22:43:08 +0200
=====================================
debian/control
=====================================
@@ -1,35 +1,38 @@
Source: mcl
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>,
- Shayan Doust <hello at shayandoust.me>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
+ Shayan Doust <hello at shayandoust.me>,
Section: math
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- architecture-is-64-bit,
- dh-ocaml,
- zoem,
- tidy,
- aephea,
- ocaml,
- ocamlbuild,
- ocaml-findlib,
- oasis,
- bsdextrautils,
- dh-exec,
- libtingea-dev
-Standards-Version: 4.7.0
+Build-Depends:
+ debhelper-compat (= 14),
+ architecture-is-64-bit,
+ dh-ocaml,
+ zoem,
+ tidy,
+ aephea,
+ ocaml,
+ ocamlbuild,
+ ocaml-findlib,
+ oasis,
+ bsdextrautils,
+ dh-exec,
+ libtingea-dev,
Vcs-Browser: https://salsa.debian.org/med-team/mcl
Vcs-Git: https://salsa.debian.org/med-team/mcl.git
Homepage: https://micans.org/mcl/
-Rules-Requires-Root: no
Package: mcl
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Suggests: mcl-doc
-Enhances: ncbi-tools-bin,
- bioperl-run
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Suggests:
+ mcl-doc,
+Enhances:
+ ncbi-tools-bin,
+ bioperl-run,
Description: Markov Cluster algorithm
The MCL package is an implementation of the MCL algorithm, and offers
utilities for manipulating sparse matrices (the essential data
@@ -43,8 +46,10 @@ Package: mcl-doc
Architecture: all
Multi-Arch: foreign
Section: doc
-Depends: ${misc:Depends}
-Suggests: mcl
+Depends:
+ ${misc:Depends},
+Suggests:
+ mcl,
Description: documentation for mcl
The MCL package is an implementation of the Markov Cluster algorithm,
for manipulating sparse matricess and conducting cluster experiments.
@@ -55,12 +60,14 @@ Description: documentation for mcl
Package: libmcl-ocaml-dev
Architecture: any
Section: ocaml
-Depends: ocaml-findlib,
- mcl,
- ${ocaml:Depends},
- ${shlibs:Depends},
- ${misc:Depends}
-Provides: ${ocaml:Provides}
+Depends:
+ ocaml-findlib,
+ mcl,
+ ${ocaml:Depends},
+ ${shlibs:Depends},
+ ${misc:Depends},
+Provides:
+ ${ocaml:Provides},
Description: library providing bindings between mcl and OCaml
The MCL package is an implementation of the MCL algorithm, and offers
utilities for manipulating sparse matrices (the essential data
=====================================
debian/patches/05-manual-what-is.patch
=====================================
@@ -1,5 +1,5 @@
Author: Philipp Benner
-Last-Update: Mon, 22 Jan 2018 12:48:19 +0100
+Last-Update: 2018-01-22
Description: Fix whatis entry in manpages
--- a/doc/clmclose.azm
=====================================
debian/patches/ansic.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Wed, 12 Oct 2022 18:03:54 +0200
+Last-Update: 2022-10-12
Description: C++ comments are invalid in ANSI C code
--- a/src/mcl/alg.c
=====================================
debian/patches/spelling.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Tue, 20 May 2014 17:20:10 +0200
+Last-Update: 2014-05-20
Description: Fix spelling
--- a/ChangeLog
=====================================
debian/rules
=====================================
@@ -14,8 +14,7 @@ SHELL = /bin/bash
# variables to be used in configure invocation. see
# autotools-dev/README.Debian.gz
-export DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
-export DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+include /usr/share/dpkg/architecture.mk
# use autoconf 2.52 or newer
ifeq ($(DEB_BUILD_GNU_TYPE), $(DEB_HOST_GNU_TYPE))
=====================================
debian/watch
=====================================
@@ -2,5 +2,5 @@ Version: 5
Source: https://micans.org/mcl/src/
Matching-Pattern: mcl-(..-.*)\.tar\.gz
-Dversionmangle: auto
-Repacksuffix: +ds
+Dversion-Mangle: auto
+Repack-Suffix: +ds
View it on GitLab: https://salsa.debian.org/med-team/mcl/-/compare/cdc9a70a77b0656943e714fa6d465be29b0dacf1...1df83ad4b0767e50ff24e95f7f5895ffd5f79175
--
View it on GitLab: https://salsa.debian.org/med-team/mcl/-/compare/cdc9a70a77b0656943e714fa6d465be29b0dacf1...1df83ad4b0767e50ff24e95f7f5895ffd5f79175
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