[med-svn] [Git][med-team/relion][master] New upstream version 5.1.0+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / relion


Commits:
92ff9695 by Andreas Tille at 2026-09-24T10:03:37+02:00
New upstream version 5.1.0+dfsg
- - - - -


82 changed files:

- CMakeLists.txt
- cmake/BuildTypes.cmake
- environment.yml
- environment_blackwell.yml → environment_pascal.yml
- + scripts/Schemes/amyprep/autopick_fom/job.star
- + scripts/Schemes/amyprep/ctffind/job.star
- + scripts/Schemes/amyprep/import/job.star
- + scripts/Schemes/amyprep/motioncorr/job.star
- + scripts/Schemes/amyprep/scheme.star
- + scripts/Schemes/amyprep/select_mics/job.star
- + scripts/Schemes/amyproc/autopick_trace/job.star
- + scripts/Schemes/amyproc/class2d/job.star
- + scripts/Schemes/amyproc/extract/job.star
- + scripts/Schemes/amyproc/scheme.star
- + scripts/Schemes/amyproc/split/job.star
- scripts/Schemes/proc/extract/job.star
- scripts/python_fetch_weights.in
- + scripts/python_trace_amyloids.in
- scripts/schemegui.py → scripts/schemegui.in
- + scripts/trace_amyloids.py
- src/CPlot2D.cpp
- src/acc/acc_ml_optimiser_impl.h
- src/align_tiltseries_runner.cpp
- src/align_tiltseries_runner.h
- + src/amyloid_finder.cpp
- + src/amyloid_finder.h
- + src/amyloid_finder_mpi.cpp
- + src/amyloid_finder_mpi.h
- src/apps/CMakeLists.txt
- + src/apps/find_amyloid.cpp
- + src/apps/find_amyloid_mpi.cpp
- src/apps/image_handler.cpp
- src/apps/import.cpp
- src/apps/maingui.cpp
- src/apps/particle_symmetry_expand.cpp
- src/apps/project.cpp
- src/apps/pseudotomo_expansion.cpp
- src/apps/star_handler.cpp
- src/autopicker.cpp
- src/backprojector.cpp
- src/backprojector.h
- src/ctffind_runner.cpp
- src/ctffind_runner.h
- src/displayer.cpp
- src/displayer.h
- src/exp_model.cpp
- src/gui_background.xpm
- src/gui_entries.h
- src/gui_jobwindow.cpp
- src/gui_jobwindow.h
- src/gui_mainwindow.cpp
- src/helix.cpp
- src/helix.h
- src/jaz/tomography/programs/align.cpp
- src/jaz/tomography/programs/reconstruct_tomogram.cpp
- src/jaz/tomography/programs/reconstruct_tomogram.h
- src/jaz/tomography/programs/subtomo.cpp
- src/jaz/tomography/programs/subtomo.h
- src/jaz/tomography/programs/subtomo_mpi.cpp
- src/jaz/tomography/tomogram_set.cpp
- src/jaz/tomography/tomogram_set.h
- src/local_symmetry.cpp
- src/local_symmetry.h
- src/local_symmetry_mpi.cpp
- src/macros.h
- src/manualpicker.cpp
- src/metadata_label.h
- src/metadata_table.cpp
- src/metadata_table.h
- src/ml_optimiser.cpp
- src/ml_optimiser.h
- src/ml_optimiser_mpi.cpp
- src/motioncorr_runner.cpp
- src/particle_subtractor.cpp
- src/pipeline_jobs.cpp
- src/pipeline_jobs.h
- src/preprocessing.cpp
- src/preprocessing.h
- src/reconstructor.cpp
- src/reconstructor.h
- src/tomography_python_programs/get_particle_poses/filaments.py
- tests/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/relion/-/commit/92ff96958be1efe1bad4b0af7e00cb767f537971

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View it on GitLab: https://salsa.debian.org/med-team/relion/-/commit/92ff96958be1efe1bad4b0af7e00cb767f537971
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