[med-svn] [Git][med-team/pplacer][master] 8 commits: Standards-Version: 4.7.4 (routine-update)
Andreas Tille (@tille)
gitlab at salsa.debian.org
Thu Sep 24 10:58:36 BST 2026
Andreas Tille pushed to branch master at Debian Med / pplacer
Commits:
6ab66d9f by Andreas Tille at 2026-09-24T11:51:00+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
818caa35 by Andreas Tille at 2026-09-24T11:51:48+02:00
Changes made by cme
- - - - -
99c31ebe by Andreas Tille at 2026-09-24T11:51:50+02:00
Remove trailing whitespace in debian/changelog (routine-update)
- - - - -
706fea6a by Andreas Tille at 2026-09-24T11:51:50+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
2a3bf23b by Andreas Tille at 2026-09-24T10:51:59+01:00
Reformat the Last-Update date as ISO YYYY-MM-DD.
Changes-By: lintian-brush
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/ocamlbuild]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/fix_makefile.patch]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/spelling.patch]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/fix_ocaml_build_error_List.min.patch]
See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html
- - - - -
ca1aaa8b by Andreas Tille at 2026-09-24T10:52:02+01:00
Set upstream metadata fields: Repository-Browse.
Changes-By: lintian-brush
- - - - -
c3b3ba39 by Andreas Tille at 2026-09-24T11:53:32+02:00
Merge unreleased changelog entries
- - - - -
630fb51b by Andreas Tille at 2026-09-24T11:56:41+02:00
Upload to unstable
- - - - -
7 changed files:
- debian/changelog
- debian/control
- debian/patches/fix_makefile.patch
- debian/patches/fix_ocaml_build_error_List.min.patch
- debian/patches/ocamlbuild
- debian/patches/spelling.patch
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,5 +1,9 @@
-pplacer (1.1~alpha19-10) UNRELEASED; urgency=medium
+pplacer (1.1~alpha19-9) unstable; urgency=medium
+ * Fix Build issues with OCaml 5.2.0
+ - Use -Wno-incompatible-pointer-types
+ - Fix misleading indentation
+ - Upgrade to Ocaml 5.2.0 API of bigarray
* Build against the OCaml bindings for the current MCL version
(libmcl-ocaml-dev) instead of the frozen mcl14 fork. The OCaml
bindings have been re-enabled in the mcl package against MCL 22-282,
@@ -29,17 +33,15 @@ pplacer (1.1~alpha19-10) UNRELEASED; urgency=medium
* Do not strip debug symbols from library
* Finally libmcl-ocaml-dev is ported to latest mcl version
Closes: #1074546
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Sep 2026 11:40:33 +0200
-
-pplacer (1.1~alpha19-9) UNRELEASED; urgency=medium
-
- * Fix Build issues with OCaml 5.2.0
- - Use -Wno-incompatible-pointer-types
- - Fix misleading indentation
- - Upgrade to Ocaml 5.2.0 API of bigarray
-
- -- Andreas Tille <tille at debian.org> Fri, 13 Dec 2024 16:59:47 +0100
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * Reformat the Last-Update date as ISO YYYY-MM-DD.
+ * Set upstream metadata fields: Repository-Browse.
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Sep 2026 11:53:45 +0200
pplacer (1.1~alpha19-8) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,32 +1,33 @@
Source: pplacer
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>,
- Shayan Doust <hello at shayandoust.me>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
+ Shayan Doust <hello at shayandoust.me>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- dh-ocaml,
- ocaml,
- ocamlbuild,
- libcsv-ocaml-dev,
- libxmlm-ocaml-dev,
- libbatteries-ocaml-dev,
- libmcl-ocaml-dev,
- libocamlgsl-ocaml-dev,
- libsqlite3-ocaml-dev,
- libzip-ocaml-dev,
- libounit-ocaml-dev,
- libtingea-dev
-Standards-Version: 4.7.1
+Build-Depends:
+ debhelper-compat (= 14),
+ dh-ocaml,
+ ocaml,
+ ocamlbuild,
+ libcsv-ocaml-dev,
+ libxmlm-ocaml-dev,
+ libbatteries-ocaml-dev,
+ libmcl-ocaml-dev,
+ libocamlgsl-ocaml-dev,
+ libsqlite3-ocaml-dev,
+ libzip-ocaml-dev,
+ libounit-ocaml-dev,
+ libtingea-dev,
Vcs-Browser: https://salsa.debian.org/med-team/pplacer
Vcs-Git: https://salsa.debian.org/med-team/pplacer.git
Homepage: https://github.com/matsen/pplacer
-Rules-Requires-Root: no
Package: pplacer
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
Description: phylogenetic placement and downstream analysis
Pplacer places reads on a phylogenetic tree. guppy (Grand Unified
Phylogenetic Placement Yanalyzer) yanalyzes them. rppr is a helpful tool
=====================================
debian/patches/fix_makefile.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 22 May 2020 07:19:29 +0200
+Last-Update: 2020-05-22
Description: Avoid calling git to obtain version
--- a/Makefile
=====================================
debian/patches/fix_ocaml_build_error_List.min.patch
=====================================
@@ -2,7 +2,7 @@ Description: Fix ocaml build issue
Bug-Debian: https://bugs.debian.org/1002230
Origin: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1002230#19
Author: Stéphane Glondu <glondu at debian.org>
-Last-Update: Wed, 22 Dec 2021 09:39:59 +0100
+Last-Update: 2021-12-22
--- a/pplacer_src/voronoi.ml
+++ b/pplacer_src/voronoi.ml
=====================================
debian/patches/ocamlbuild
=====================================
@@ -1,6 +1,6 @@
Author: Ralf Treinen
Shayan Doust
-Last-Update: 2020-06-21 22:04:51 +0100
+Last-Update: 2020-06-21
Description: Build with recent ocaml
--- pplacer.orig/myocamlbuild.ml
=====================================
debian/patches/spelling.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Fri, 22 May 2020 07:19:29 +0200
+Last-Update: 2020-05-22
Description: Fix spelling
--- a/cdd_src/cddio.c
=====================================
debian/upstream/metadata
=====================================
@@ -18,3 +18,4 @@ Reference:
Registry:
- Name: conda:bioconda
Entry: pplacer
+Repository-Browse: https://github.com/matsen/pplacer
View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/compare/87f2fb3a5c54b1cf770982db4d16151f77888dd0...630fb51b3f4e53952dadc382914195e1fb777edb
--
View it on GitLab: https://salsa.debian.org/med-team/pplacer/-/compare/87f2fb3a5c54b1cf770982db4d16151f77888dd0...630fb51b3f4e53952dadc382914195e1fb777edb
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