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<h3>
Olivier Sallou pushed to branch master
at <a href="https://salsa.debian.org/med-team/logol">Debian Med / logol</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/logol/commit/50db23f56adec027e18a7e8afea362305dfe1703">50db23f5</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-04-04T13:32:58+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.7.8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/logol/commit/e89726d6f4ab5975f9c5039573f7bcf0d0d9a8ae">e89726d6</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-04-04T13:33:00+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated version 1.7.8 from 'upstream/1.7.8'

with Debian dir 957d74bf2aa367f09770cf1e94c77075d81fae9a</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/logol/commit/ece97fa4d2b9a29c7e4e1cad6da5a943e38fec1a">ece97fa4</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-04-04T13:34:29+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream release 1.7.8-1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/logol/commit/85892d3758f1c0357fd781aa27aeea9174297942">85892d37</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-04-04T13:36:55+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">upload new upstream release 1.7.8
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/logol/commit/c5fa9610279b633f0d332737226acc3a966cd095">c5fa9610</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-04-04T13:41:53+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove old unused patches
</pre>
</li>
</ul>
<h4>13 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#277f6644ade46b30f40eac6cd851ebc571c513ca">
CHANGELOG.txt
</a>
</li>
<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#42c0894717a62a413ab3fdd1a41a45c68ffb2e2f">
<span class="deleted-file">
−
debian/patches/fix_pldoc
</span>
</a>
</li>
<li class="file-stats">
<a href="#b8c2bba2959c3dc0bc8bba66286089645115d4c8">
<span class="deleted-file">
−
debian/patches/fix_pldoc2tex_generation
</span>
</a>
</li>
<li class="file-stats">
<a href="#7f3fd4263393da7f2988fff0544bd984c960e27f">
<span class="deleted-file">
−
debian/patches/fix_swipl_module_declaration
</span>
</a>
</li>
<li class="file-stats">
<a href="#b93e09f9b35b01cade4e784cab76582e3be4c855">
<span class="deleted-file">
−
debian/patches/harden_swipl_declarations
</span>
</a>
</li>
<li class="file-stats">
<a href="#7ad72ddba9974a40449d2395869f43549a5b8d47">
prolog/logol.pl
</a>
</li>
<li class="file-stats">
<a href="#516e06c1f6bc472c7ca2e879a0d47cdaf7024493">
src/org/irisa/genouest/logol/SequenceAnalyser.java
</a>
</li>
<li class="file-stats">
<a href="#b023f75978a60c77ff9c20f2d08adbf1e080fee7">
src/org/irisa/genouest/logol/test/GrammarTest.java
</a>
</li>
<li class="file-stats">
<a href="#eceebe933406e8fd5e17ade3647367432da281a1">
<span class="new-file">
+
test/end_of_stream1.logol
</span>
</a>
</li>
<li class="file-stats">
<a href="#9934dc28ebfd136e1e7d165ca1c8a6dad4dab8c4">
<span class="new-file">
+
test/end_of_stream2.logol
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="277f6644ade46b30f40eac6cd851ebc571c513ca">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#277f6644ade46b30f40eac6cd851ebc571c513ca"><strong>CHANGELOG.txt</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 12px;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1
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<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">History:</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">1.7.8: 03/04/18 O. Sallou - Detect process execution failure (out of memory, etc.) and display error message</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">1.7.7: 08/12/17 O. Sallou - Fix *not* and *spacer* contraints when reaching end of sequence (last characters)</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2
</td>
<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">1.7.6: 07/12/17 O. Sallou - Fix endConstraint, was comparing end position + 1 instead of end position</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
</td>
<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">1.7.5: 09/09/16 O. Sallou - Fix way to load characters from sequence file to increase performance</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
</td>
<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">1.7.4: 08/01/16 O. Sallou - Fix multiexec error message display</span>
</pre>
</td>
</tr>

</table>
<br>
</li>
<li id="bdc348bf75801c527f51cdeddc8edf027f7ef35a">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#bdc348bf75801c527f51cdeddc8edf027f7ef35a"><strong>build.xml</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 12px;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,7 @@</td>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="xml"><span class="c" style="color: #998; font-style: italic;">            target.dir=/path_where_files_should_be_installed</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="xml"><span class="c" style="color: #998; font-style: italic;">         --></span></span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="xml"></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC13" class="line" lang="xml">   <span class="nt" style="color: navy;"><property</span> <span class="na" style="color: teal;">name=</span><span class="s" style="color: #d14;">"version"</span> <span class="na" style="color: teal;">value=</span><span class="s" style="color: #d14;">"1.7.<span class="idiff left right">6</span>"</span> <span class="nt" style="color: navy;">/></span></span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC13" class="line" lang="xml">   <span class="nt" style="color: navy;"><property</span> <span class="na" style="color: teal;">name=</span><span class="s" style="color: #d14;">"version"</span> <span class="na" style="color: teal;">value=</span><span class="s" style="color: #d14;">"1.7.<span class="idiff left right">8</span>"</span> <span class="nt" style="color: navy;">/></span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="xml"></span>
</pre>
</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="xml">   <span class="nt" style="color: navy;"><condition</span> <span class="na" style="color: teal;">property=</span><span class="s" style="color: #d14;">"ruby_path"</span> <span class="na" style="color: teal;">value=</span><span class="s" style="color: #d14;">"${env.RUBY_PATH}"</span></span>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="xml">           <span class="na" style="color: teal;">else=</span><span class="s" style="color: #d14;">""</span><span class="nt" style="color: navy;">></span></span>
</pre>
</td>
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</table>
<br>
</li>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
<hr>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">logol (1.7.8-1) unstable; urgency=medium</span>
</pre>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">  * New upstream release (bug fixes) </span>
</pre>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Olivier Sallou <osallou@debian.org>  Wed, 04 Apr 2018 13:33:57 +0000</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
</pre>
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1
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">logol (1.7.6-1) unstable; urgency=medium</span>
</pre>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
</pre>
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3
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">  * New upstream release </span>
</pre>
</td>
</tr>

</table>
<br>
</li>
<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
<hr>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,17 +2,17 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</td>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: logol</span>
</pre>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://gforge.inria.fr/projects/logolexec</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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4
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Files: *</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Copyright: 2015 Olivier Sallou <olivier.sallou@irisa.fr></span>
</pre>
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">License: AGPL-3.0+</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> License can be found at https://www.gnu.org/licenses/agpl-3.0.html</span>
</pre>
</td>
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9
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Files: Doc/pldoc.sty</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
</td>
<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Copyright: 1985-2004 University of Amsterdam</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
</td>
<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">License: LGPL-2+</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
</td>
<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> On Debian systems, you can find the GNU Lesser General Public License in</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
</td>
<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> the file /usr/share/common-licenses/LGPL-2</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
</td>
<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
</td>
<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Files: *</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
</td>
<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">Copyright: 2015 Olivier Sallou <olivier.sallou@irisa.fr></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
</td>
<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">License: AGPL-3.0+</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
</td>
<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> License can be found at https://www.gnu.org/licenses/agpl-3.0.html</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
</td>
<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
</td>
<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Files: debian/*</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
</td>
<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Copyright: 2011 Olivier Sallou <olivier.sallou@irisa.fr></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
</td>
<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">License: GPL-2+</span>
</pre>
</td>
</tr>

</table>
<br>
</li>
<li id="42c0894717a62a413ab3fdd1a41a45c68ffb2e2f">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#42c0894717a62a413ab3fdd1a41a45c68ffb2e2f"><strong>debian/patches/fix_pldoc</strong>
deleted
</a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 12px;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Subject: adapt to new swi-prolog</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Description: swipl doc generation changed and breaks</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> current definition</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
4
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Author: Olivier Sallou <osallou@debian.org></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
5
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Last-Updated: 2013-12-01</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
6
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Forwarded: yes</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Bug: 739916</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Upstream-Bug: https://gforge.inria.fr/tracker/index.php?func=detail&aid=16708&group_id=1318&atid=5219</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">--- a/tools/swidoc.pl</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
10
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">+++ b/tools/swidoc.pl</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> :- use_module(library(doc_latex)).</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">-:- current_prolog_flag(argv,[_,_,_,_,Doc]),open('logol.tex',write,OS),latex_for_file(Doc,OS,[]),close(OS).</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">+:- open('logol.tex',write,OS),latex_for_file('logoldoc.pl',OS,[]),close(OS).</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> </span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> :-halt.</span></pre>
</td>
</tr>

</table>
<br>
</li>
<li id="b8c2bba2959c3dc0bc8bba66286089645115d4c8">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#b8c2bba2959c3dc0bc8bba66286089645115d4c8"><strong>debian/patches/fix_pldoc2tex_generation</strong>
deleted
</a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 12px;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Subject: generated tex by pldoc not supported by texlive</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Description: lpdoc generate tex file from prolog. Generated file</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> fails to be converted with pdflatex since later releases.</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
4
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> This patch modifies generated file to support pdf conversion.</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
5
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Author: Olivier Sallou <osallou@debian.org></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
6
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Last-Updated: 2013-08-08</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Forwarded: yes</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Bug: 719079</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">--- a/tools/generate-doc.sh</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
10
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">+++ b/tools/generate-doc.sh</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">@@ -2,6 +2,10 @@</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> </span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> sed  's/,\[assertions,basicmodes,functions,regtypes,hiord\]//' ../prolog/logol.pl > logoldoc.pl</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> swipl -f swidoc.pl -- logoldoc.pl</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">+</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">+sed -i 's/makeindex/makeindex\n\\newenvironment{arguments}{\\textbf{Arguments} \\newline}{\\vspace*{0.5\\baselineskip}}/' logol.tex</span>
</pre>
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17
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">+sed -i  's/} &/}/g'  logol.tex</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">+</span>
</pre>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> pdflatex logol.tex</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> </span>
</pre>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> rm logoldoc.pl</span></pre>
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<br>
</li>
<li id="7f3fd4263393da7f2988fff0544bd984c960e27f">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#7f3fd4263393da7f2988fff0544bd984c960e27f"><strong>debian/patches/fix_swipl_module_declaration</strong>
deleted
</a>
<hr>
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1
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Subject: fix module declaration for swipl, different from sicstus-prolog.</span>
</pre>
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2
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Description: for swipl, default used in packaging, the module declaration is different. This patch fix this difference. Upstream manage both</span>
</pre>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Forwarded: No</span>
</pre>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Author: Olivier Sallou <osallou@debian.org></span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Last-Updated: 2013-10-07</span>
</pre>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">--- a/prolog/logol.pl</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">+++ b/prolog/logol.pl</span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
</pre>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">-:- module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,externalinterfacewithspacer/2,externalinterface/2,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,getPosition_pos/3,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3, iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4, checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7],[assertions,basicmodes,functions,regtypes,hiord]).</span>
</pre>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">+:- module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,externalinterfacewithspacer/2,externalinterface/2,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,getPosition_pos/3,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3, iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4, checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7],[]).</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> /** <module> Logol Prolog API</span></pre>
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<li id="b93e09f9b35b01cade4e784cab76582e3be4c855">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#b93e09f9b35b01cade4e784cab76582e3be4c855"><strong>debian/patches/harden_swipl_declarations</strong>
deleted
</a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Author: Olivier Sallou <osallou@debian.org></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Subject: swi-prolog raise error instead of warnings for undefined modules</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Description: swi-prolog raise an error for exported procedure not matching</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> declared procedure. </span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> It also raises error on modules declared for sicstus prolog. Patch need to </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> remove them (not needed for swi-prolog)</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Forwarded: yes</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Bug: https://gforge.inria.fr/tracker/index.php?func=detail&aid=16249&group_id=1318&atid=5219</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">--- a/prolog/logol.pl</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">+++ b/prolog/logol.pl</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">-:- module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,externalinterfacewithspacer/2,externalinterface/2,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,getPosition_pos/3,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/1,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3, iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4, checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/7,saveVariableByRef/7,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2],[assertions,basicmodes,functions,regtypes,hiord]).</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">+:- module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,externalinterfacewithspacer/2,externalinterface/2,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,getPosition_pos/2,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3, iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4, checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,saveVariable/9,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7],[]).</span>
</pre>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> </span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> /** <module> Logol Prolog API</span></pre>
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<br>
</li>
<li id="7ad72ddba9974a40449d2395869f43549a5b8d47">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#7ad72ddba9974a40449d2395869f43549a5b8d47"><strong>prolog/logol.pl</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1013" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1013" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1013,7 +1013,8 @@ spacer_withresult([X|Y],Min, Max, Word, Z) :- (((Min=0,NewX=[X|Y]);(Min>0,cut_se</td>
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<pre style="margin: 0;"> <span id="LC1013" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span><span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">([</span><span class="nv" style="color: teal;">X</span><span class="p">|</span><span class="nv" style="color: teal;">Y</span><span class="p">],</span><span class="nv" style="color: teal;">Min</span><span class="p">,</span> <span class="nv" style="color: teal;">Max</span><span class="p">,</span> <span class="nv" style="color: teal;">Z</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">)</span> <span class="p">:-</span> <span class="nv" style="color: teal;">N</span> <span class="ss" style="color: #990073;">is</span> <span class="m" style="color: #099;">0</span><span class="p">,((</span><span class="nv" style="color: teal;">Min</span><span class="o" style="font-weight: 600;">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span><span class="nv" style="color: teal;">Z</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="nv" style="color: teal;">X</span> <span class="p">|</span> <span class="nv" style="color: teal;">Y</span><span class="p">]);(</span><span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">([</span><span class="nv" style="color: teal;">X</span><span class="p">|</span><span class="nv" style="color: teal;">Y</span><span class="p">],</span><span class="nv" style="color: teal;">N</span><span class="p">,</span><span class="nv" style="color: teal;">Min</span><span class="p">,</span><span class="nv" style="color: teal;">Max</span><span class="p">,</span><span class="nv" style="color: teal;">Z</span><span class="p">,[],</span> <span class="nv" style="color: teal;">Word</span><span class="p">))).</span></span>
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<pre style="margin: 0;"> <span id="LC1014" class="line" lang="prolog"></span>
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<pre style="margin: 0;"> <span id="LC1015" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span> <span class="ss" style="color: #990073;">sub</span> <span class="ss" style="color: #990073;">predicate</span><span class="p">,</span> <span class="ss" style="color: #990073;">do</span> <span class="ss" style="color: #990073;">not</span> <span class="ss" style="color: #990073;">call</span> <span class="ss" style="color: #990073;">directly</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1016" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="1016" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC1016" class="line" lang="prolog"><span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">([],</span> <span class="nv" style="color: teal;">N</span><span class="p">,</span> <span class="nv" style="color: teal;">Min</span><span class="p">,</span> <span class="nv" style="color: teal;">Max</span><span class="p">,</span> <span class="nv" style="color: teal;">Z</span><span class="p">,</span> <span class="nv" style="color: teal;">Spacer</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">)</span> <span class="p">:-</span> <span class="ss" style="color: #990073;">fail</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1017" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="1016" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1016
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<pre style="margin: 0;">+<span id="LC1016" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span><span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">([],</span> <span class="nv" style="color: teal;">N</span><span class="p">,</span> <span class="nv" style="color: teal;">Min</span><span class="p">,</span> <span class="nv" style="color: teal;">Max</span><span class="p">,</span> <span class="nv" style="color: teal;">Z</span><span class="p">,</span> <span class="nv" style="color: teal;">Spacer</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">)</span> <span class="p">:-</span> <span class="ss" style="color: #990073;">fail</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1017" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="1017" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1017
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<pre style="margin: 0;">+<span id="LC1017" class="line" lang="prolog"><span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">([],</span> <span class="nv" style="color: teal;">N</span><span class="p">,</span> <span class="nv" style="color: teal;">Min</span><span class="p">,</span> <span class="nv" style="color: teal;">Max</span><span class="p">,</span> <span class="nv" style="color: teal;">Z</span><span class="p">,</span> <span class="nv" style="color: teal;">Spacer</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">)</span> <span class="p">:-</span> <span class="nv" style="color: teal;">Word</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">Spacer</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="1018" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1018" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span> <span class="ss" style="color: #990073;">sub</span> <span class="ss" style="color: #990073;">predicate</span><span class="p">,</span> <span class="ss" style="color: #990073;">do</span> <span class="ss" style="color: #990073;">not</span> <span class="ss" style="color: #990073;">call</span> <span class="ss" style="color: #990073;">directly</span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="1019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1019" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span><span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">([</span><span class="nv" style="color: teal;">X</span><span class="p">|</span><span class="nv" style="color: teal;">Y</span><span class="p">],</span><span class="nv" style="color: teal;">N</span><span class="p">,</span> <span class="nv" style="color: teal;">Min</span><span class="p">,</span> <span class="nv" style="color: teal;">Max</span><span class="p">,</span> <span class="nv" style="color: teal;">Z</span><span class="p">,</span> <span class="nv" style="color: teal;">Spacer</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">)</span> <span class="p">:-</span> <span class="nv" style="color: teal;">Ninc</span> <span class="ss" style="color: #990073;">is</span> <span class="nv" style="color: teal;">N</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="p">,</span><span class="ss" style="color: #990073;">append</span><span class="p">(</span><span class="nv" style="color: teal;">Spacer</span><span class="p">,</span> <span class="p">[</span><span class="nv" style="color: teal;">X</span><span class="p">],</span> <span class="nv" style="color: teal;">IncWord</span><span class="p">),((</span><span class="nv" style="color: teal;">Ninc</span><span class="o" style="font-weight: 600;"><</span><span class="nv" style="color: teal;">Max</span><span class="p">,</span><span class="ss" style="color: #990073;">isalphabet</span><span class="p">(</span><span class="nv" style="color: teal;">X</span><span class="p">),</span> <span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">(</span><span class="nv" style="color: teal;">Y</span><span class="p">,</span><span class="nv" style="color: teal;">Ninc</span><span class="p">,</span><span class="nv" style="color: teal;">Min</span><span class="p">,</span><span class="nv" style="color: teal;">Max</span><span class="p">,</span><span class="nv" style="color: teal;">Z</span><span class="p">,</span><span class="nv" style="color: teal;">IncWord</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">));(</span><span class="nv" style="color: teal;">Ninc</span><span class="o" style="font-weight: 600;">>=</span><span class="nv" style="color: teal;">Min</span><span class="p">,</span><span class="nv" style="color: teal;">Z</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">Y</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">IncWord</span><span class="p">)).</span></span>
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<td class="diff-line-num old_line" data-linenumber="1019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1019
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<td class="diff-line-num new_line" data-linenumber="1020" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1020
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<pre style="margin: 0;"> <span id="LC1020" class="line" lang="prolog"><span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">([</span><span class="nv" style="color: teal;">X</span><span class="p">|</span><span class="nv" style="color: teal;">Y</span><span class="p">],</span><span class="nv" style="color: teal;">N</span><span class="p">,</span> <span class="nv" style="color: teal;">Min</span><span class="p">,</span> <span class="nv" style="color: teal;">Max</span><span class="p">,</span> <span class="nv" style="color: teal;">Z</span><span class="p">,</span> <span class="nv" style="color: teal;">Spacer</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">)</span> <span class="p">:-</span>  <span class="p">(</span><span class="nv" style="color: teal;">Z</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="nv" style="color: teal;">X</span> <span class="p">|</span><span class="nv" style="color: teal;">Y</span><span class="p">],</span> <span class="nv" style="color: teal;">Word</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">Spacer</span><span class="p">);</span> <span class="p">(</span><span class="nv" style="color: teal;">Ninc</span> <span class="ss" style="color: #990073;">is</span> <span class="nv" style="color: teal;">N</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="p">,</span><span class="ss" style="color: #990073;">append</span><span class="p">(</span><span class="nv" style="color: teal;">Spacer</span><span class="p">,</span> <span class="p">[</span><span class="nv" style="color: teal;">X</span><span class="p">],</span> <span class="nv" style="color: teal;">IncWord</span><span class="p">),</span><span class="nv" style="color: teal;">Ninc</span><span class="o" style="font-weight: 600;">=<</span><span class="nv" style="color: teal;">Max</span><span class="p">,</span> <span class="ss" style="color: #990073;">spacer_withresult</span><span class="p">(</span><span class="nv" style="color: teal;">Y</span><span class="p">,</span><span class="nv" style="color: teal;">Ninc</span><span class="p">,</span><span class="nv" style="color: teal;">Min</span><span class="p">,</span><span class="nv" style="color: teal;">Max</span><span class="p">,</span><span class="nv" style="color: teal;">Z</span><span class="p">,</span><span class="nv" style="color: teal;">IncWord</span><span class="p">,</span> <span class="nv" style="color: teal;">Word</span><span class="p">)).</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2460" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2459,7 +2460,7 @@ between(Min,Cur,Max,Value):-Cur=<Max,(Value=Cur;Next is Cur + 1,between(Min,Next</td>
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<td class="diff-line-num old_line" data-linenumber="2459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="2460" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2460" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span> <span class="nv" style="color: teal;">Fix</span> <span class="m" style="color: #099;">1406</span></span>
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<td class="diff-line-num new_line" data-linenumber="2461" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2461" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span> <span class="nv" style="color: teal;">Call</span> <span class="ss" style="color: #990073;">predicate</span><span class="p">.</span> <span class="nv" style="color: teal;">If</span> <span class="ss" style="color: #990073;">match</span><span class="p">,</span> <span class="ss" style="color: #990073;">return</span> <span class="ss" style="color: #990073;">last</span> <span class="ss" style="color: #990073;">argument</span> <span class="ss" style="color: #990073;">e</span><span class="p">.</span><span class="ss" style="color: #990073;">g</span><span class="p">.</span> <span class="ss" style="color: #990073;">position</span><span class="p">,</span> <span class="ss" style="color: #990073;">else</span> <span class="ss" style="color: #990073;">return</span> <span class="m" style="color: #099;">0</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2461" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2461
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<td class="diff-line-num new_line" data-linenumber="2462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2462" class="line" lang="prolog"><span class="ss" style="color: #990073;">callpred</span><span class="p">(</span><span class="nv" style="color: teal;">Pred</span><span class="p">,</span><span class="nv" style="color: teal;">OutPos</span><span class="p">,</span><span class="nv" style="color: teal;">Pos</span><span class="p">):-</span> <span class="p">(</span><span class="nv" style="color: teal;">Pred</span> <span class="p">,(</span><span class="nv" style="color: teal;">Pred</span><span class="o" style="font-weight: 600;">=..</span><span class="nv" style="color: teal;">VarDef</span><span class="p">,</span><span class="ss" style="color: #990073;">nth0</span><span class="p">(</span><span class="nv" style="color: teal;">OutPos</span><span class="p">,</span><span class="nv" style="color: teal;">VarDef</span><span class="p">,</span><span class="nv" style="color: teal;">Pos</span><span class="p">)));(</span><span class="nv" style="color: teal;">Pos</span><span class="o" style="font-weight: 600;">=</span><span class="m" style="color: #099;">0</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="2463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC2462" class="line" lang="prolog"><span class="ss" style="color: #990073;">notpred_pos</span><span class="p">(</span><span class="nv" style="color: teal;">VarId</span><span class="p">,</span><span class="nv" style="color: teal;">StartPos</span><span class="p">,</span><span class="nv" style="color: teal;">Pred</span><span class="p">,</span><span class="nv" style="color: teal;">Min</span><span class="p">,</span><span class="nv" style="color: teal;">Max</span><span class="p">,</span><span class="nv" style="color: teal;"><span class="idiff left">Value</span></span><span class="p"><span class="idiff">):-</span></span><span class="ss" style="color: #990073;"><span class="idiff">random</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">),</span></span><span class="ss" style="color: #990073;"><span class="idiff">retractall</span></span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">_</span></span><span class="p"><span class="idiff">)),</span></span><span class="nv" style="color: teal;"><span class="idiff">Pred</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=..</span></span><span class="nv" style="color: teal;"><span class="idiff">VarDef</span></span><span class="p"><span class="idiff">,</span></span><span class="ss" style="color: #990073;"><span class="idiff">length</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">VarDef</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Predlength</span></span><span class="p"><span class="idiff">),</span></span><span class="nv" style="color: teal;"><span class="idiff">OutPos</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Predlength</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">PosMin</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Min</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">PosMax</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Max</span></span><span class="p"><span class="idiff">,!,</span></span><span class="ss" style="color: #990073;"><span class="idiff">between</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">PosMax</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="p"><span class="idiff">),(</span></span><span class="ss" style="color: #990073;"><span class="idiff">callpred</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Pred</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">OutPos</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Pos</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">((</span></span><span class="err" style="color: #a61717; background-color: #e3d2d2;"><span class="idiff">\</span></span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Pos</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">assert</span></span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Pos</span></span><span class="p"><span class="idiff">)));</span></span><span class="m" style="color: #099;"><span class="idiff">1</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">),</span></span><span class="err" style="color: #a61717; background-color: #e3d2d2;"><span class="idiff">\</span></span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="p"><span class="idiff">),</span></span><span class="ss" style="color: #990073;"><span class="idiff">assert</span></span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="p"><span class="idiff">)))),</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="o" style="font-weight: 600;"><span class="idiff">>=</span></span><span class="nv" style="color: teal;"><span class="idiff right">PosMin</span></span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="2463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2463
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2463" class="line" lang="prolog"><span class="ss" style="color: #990073;">notpred_pos</span><span class="p">(</span><span class="nv" style="color: teal;">VarId</span><span class="p">,</span><span class="nv" style="color: teal;">StartPos</span><span class="p">,</span><span class="nv" style="color: teal;">Pred</span><span class="p">,</span><span class="nv" style="color: teal;">Min</span><span class="p">,</span><span class="nv" style="color: teal;">Max</span><span class="p">,</span><span class="nv" style="color: teal;"><span class="idiff left">OutputPos</span></span><span class="p"><span class="idiff">):-</span></span><span class="ss" style="color: #990073;"><span class="idiff">random</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">),</span></span><span class="ss" style="color: #990073;"><span class="idiff">retractall</span></span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">_</span></span><span class="p"><span class="idiff">)),</span></span><span class="nv" style="color: teal;"><span class="idiff">Pred</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=..</span></span><span class="nv" style="color: teal;"><span class="idiff">VarDef</span></span><span class="p"><span class="idiff">,</span></span><span class="ss" style="color: #990073;"><span class="idiff">length</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">VarDef</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Predlength</span></span><span class="p"><span class="idiff">),</span></span><span class="nv" style="color: teal;"><span class="idiff">OutPos</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Predlength</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">PosMin</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Min</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">PosMax</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Max</span></span><span class="p"><span class="idiff">,!,</span></span><span class="ss" style="color: #990073;"><span class="idiff">between</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">PosMax</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="p"><span class="idiff">),(</span></span><span class="ss" style="color: #990073;"><span class="idiff">callpred</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Pred</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">OutPos</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Pos</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="p"><span class="idiff">((</span></span><span class="err" style="color: #a61717; background-color: #e3d2d2;"><span class="idiff">\</span></span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Pos</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">assert</span></span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Pos</span></span><span class="p"><span class="idiff">)));</span></span><span class="m" style="color: #099;"><span class="idiff">1</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">),</span></span><span class="err" style="color: #a61717; background-color: #e3d2d2;"><span class="idiff">\</span></span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="p"><span class="idiff">),</span></span><span class="ss" style="color: #990073;"><span class="idiff">assert</span></span><span class="p"><span class="idiff">(</span></span><span class="ss" style="color: #990073;"><span class="idiff">hasmatch</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">Id</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="p"><span class="idiff">)))),</span></span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="o" style="font-weight: 600;"><span class="idiff">>=</span></span><span class="nv" style="color: teal;"><span class="idiff">PosMin</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">ValueLength</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Value</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="p"><span class="idiff">,</span></span><span class="ss" style="color: #990073;"><span class="idiff">getCharsFromPosition</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">ValueLength</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">FoundWord</span></span><span class="p"><span class="idiff">),</span></span><span class="ss" style="color: #990073;"><span class="idiff">length</span></span><span class="p"><span class="idiff">(</span></span><span class="nv" style="color: teal;"><span class="idiff">FoundWord</span></span><span class="p"><span class="idiff">,</span></span><span class="nv" style="color: teal;"><span class="idiff">FoundLength</span></span><span class="p"><span class="idiff">),</span></span><span class="nv" style="color: teal;"><span class="idiff">FoundLength</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">>=</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">Min</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">FoundLength</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=<</span></span><span class="nv" style="color: teal;"><span class="idiff">Max</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">OutputPos</span></span><span class="idiff"> </span><span class="ss" style="color: #990073;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">StartPos</span></span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="nv" style="color: teal;"><span class="idiff right">FoundLength</span></span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2463
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<td class="diff-line-num new_line" data-linenumber="2464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2464
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2464" class="line" lang="prolog"></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2464
</td>
<td class="diff-line-num new_line" data-linenumber="2465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2465
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2465" class="line" lang="prolog"></span>
</pre>
</td>
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<pre style="margin: 0;"> <span id="LC2466" class="line" lang="prolog"><span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span> <span class="nv" style="color: teal;">Test</span> <span class="ss" style="color: #990073;">predicate</span> <span class="ss" style="color: #990073;">to</span> <span class="ss" style="color: #990073;">use</span> <span class="ss" style="color: #990073;">with</span> <span class="ss" style="color: #990073;">predicate</span> <span class="ss" style="color: #990073;">requiring</span> <span class="ss" style="color: #990073;">a</span> <span class="ss" style="color: #990073;">position</span> <span class="ss" style="color: #990073;">relative</span> <span class="ss" style="color: #990073;">predicate</span> <span class="ss" style="color: #990073;">as</span> <span class="ss" style="color: #990073;">parameter</span><span class="p">.</span></span>
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</li>
<li id="516e06c1f6bc472c7ca2e879a0d47cdaf7024493">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#516e06c1f6bc472c7ca2e879a0d47cdaf7024493"><strong>src/org/irisa/genouest/logol/SequenceAnalyser.java</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,7 @@ import org.irisa.genouest.logol.utils.MySequence;</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="java"><span class="kd" style="font-weight: 600;">public</span> <span class="kd" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">SequenceAnalyser</span> <span class="kd" style="font-weight: 600;">extends</span> <span class="n" style="color: #333;">Thread</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="java">  <span class="kd" style="font-weight: 600;">private</span> <span class="kd" style="font-weight: 600;">static</span> <span class="kd" style="font-weight: 600;">final</span> <span class="n" style="color: #333;">Logger</span> <span class="n" style="color: #333;">logger</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getLogger</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">org</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">irisa</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">genouest</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">SequenceAnalyser</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">class</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="java"><span class="idiff left right">   </span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="java">  <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">executable</span><span class="o" style="font-weight: 600;">=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="java">  <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">prologFile</span><span class="o" style="font-weight: 600;">=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="java">  <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">savFile</span><span class="o" style="font-weight: 600;">=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,12 +35,12 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="java">    <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">sequenceId</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="java">    <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">status</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="java">    <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="java">    <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">resultFileName</span><span class="o" style="font-weight: 600;">=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="java">    <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">maxSolutions</span><span class="o" style="font-weight: 600;">=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="java"><span class="idiff left right">    </span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="java">    <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">minTreeIndex</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="java"><span class="idiff left right">    </span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="java">    <span class="n" style="color: #333;">Sequence</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="java"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,18 +54,18 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="java">          <span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">end</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="java">          <span class="n" style="color: #333;">sequenceId</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="java">          <span class="n" style="color: #333;">sequenceOffset</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">offset</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="java"><span class="idiff left right">           </span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="java">          <span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">output</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">".fasta"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="java">          <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"output file = "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="java">          <span class="n" style="color: #333;">maxSolutions</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">max</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="java"><span class="idiff left right">           </span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="java"><span class="idiff left right">           </span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="java"><span class="idiff left right">           </span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="java">    <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="java"><span class="idiff left right">     </span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="java"><span class="idiff left right">    </span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="java"><span class="idiff left right">    </span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="java">    <span class="n" style="color: #333;">SequenceAnalyser</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">exec</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">proFile</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">savFilePath</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">header</span><span class="o" style="font-weight: 600;">,</span><span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">start</span><span class="o" style="font-weight: 600;">,</span><span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">end</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">output</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">max</span><span class="o" style="font-weight: 600;">,</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">offset</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="java">          <span class="n" style="color: #333;">executable</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">exec</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="java">          <span class="n" style="color: #333;">prologFile</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">proFile</span><span class="o" style="font-weight: 600;">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,7 +77,7 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="java">          <span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">end</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="java">          <span class="n" style="color: #333;">sequenceId</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="java">          <span class="n" style="color: #333;">sequenceOffset</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">offset</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="java"><span class="idiff left right">           </span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="java">          <span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">output</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">".fasta"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="java">          <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"output file = "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="java"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -87,9 +87,9 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="java">    <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">run</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="java">          <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Start thread for file sequence "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">sequenceId</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="java">          <span class="c1" style="color: #998; font-style: italic;">// read and save partial file</span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="java"><span class="idiff left right">           </span></span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="java">          <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">lv_startTime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">System</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">currentTimeMillis</span><span class="o" style="font-weight: 600;">();</span><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="java"><span class="idiff left right">           </span></span>
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="java"></span>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="java">          <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">lv_startTime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">System</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">currentTimeMillis</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="java">          <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="java">                  <span class="c1" style="color: #998; font-style: italic;">//rewriteSequence(sequenceFileName,outputFile,startOffset,endOffset);</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="java">                  <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">outFile</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">File</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -101,7 +101,7 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="java">                 <span class="n" style="color: #333;">BufferedReader</span> <span class="n" style="color: #333;">br</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">BufferedReader</span><span class="o" style="font-weight: 600;">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">FileReader</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">));</span></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="java">                 <span class="n" style="color: #333;">headerFile</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">br</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">readLine</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="java">                 <span class="n" style="color: #333;">br</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">close</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="java"><span class="idiff left right">                  </span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="java">                 <span class="c1" style="color: #998; font-style: italic;">// Create a file if type is RNA or DNA so that external scripts know the type of sequence</span></span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="java">                 <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Treatment</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">dataType</span><span class="o" style="font-weight: 600;">==</span><span class="n" style="color: #333;">Constants</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">DNA</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">Treatment</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">dataType</span><span class="o" style="font-weight: 600;">==</span><span class="n" style="color: #333;">Constants</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">RNA</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="java">                         <span class="n" style="color: #333;">FileWriter</span> <span class="n" style="color: #333;">typeFile</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">FileWriter</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">".index.dna"</span><span class="o" style="font-weight: 600;">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -109,11 +109,11 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="java">                         <span class="n" style="color: #333;">dnaos</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">write</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"dna/rna"</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="java">                         <span class="n" style="color: #333;">dnaos</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">close</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="java">                 <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="java"><span class="idiff left right">                  </span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">IOException</span> <span class="n" style="color: #333;">e1</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="java">                 <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">error</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Error while rewriting sequence file "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">e1</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="java"><span class="idiff left right">          </span></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="java"></span>
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<td class="diff-line-num old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="java">         <span class="c1" style="color: #998; font-style: italic;">//create tree</span></span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="java">        <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="java">                 <span class="n" style="color: #333;">createTree</span><span class="o" style="font-weight: 600;">();</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,7 +122,7 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="java">                 <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Coudld not make tree for suffix array: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="java">                 <span class="k" style="font-weight: 600;">return</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="java"></span>
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<td class="diff-line-num old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="java">        <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="java">                 <span class="n" style="color: #333;">callProgram</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">IOException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -130,66 +130,66 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="java">                 <span class="n" style="color: #333;">msg</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Coudld not execute program: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="java">                 <span class="k" style="font-weight: 600;">return</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="java">         <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">lv_endTime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">System</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">currentTimeMillis</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="java"><span class="idiff left right">          </span></span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="java"></span>
</pre>
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="java">         <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Thread for "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">" terminated in "</span><span class="o" style="font-weight: 600;">+(</span><span class="n" style="color: #333;">lv_endTime</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">lv_startTime</span><span class="o" style="font-weight: 600;">));</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="java"><span class="idiff left right">          </span></span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="java"></span>
</pre>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="java">    <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="java"></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="java"><span class="idiff left right">    </span></span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="java">    <span class="nd">@Deprecated</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="java">    <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">rewriteSequence</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">sequenceFileName</span><span class="o" style="font-weight: 600;">,</span><span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">,</span><span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">,</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">)</span> <span class="kd" style="font-weight: 600;">throws</span> <span class="n" style="color: #333;">IOException</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="java"><span class="idiff left right">  </span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="java"><span class="idiff left right">    </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="java">        <span class="n" style="color: #333;">FileWriter</span> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">FileWriter</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="java">        <span class="n" style="color: #333;">BufferedWriter</span> <span class="n" style="color: #333;">bw</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">BufferedWriter</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">out</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="java">        <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="java"><span class="idiff left right">       </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
149
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<td class="diff-line-num new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="java">        <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">wholeSequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">File</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">sequenceFileName</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
150
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="java">        <span class="n" style="color: #333;">RandomAccessFile</span> <span class="n" style="color: #333;">input</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">RandomAccessFile</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">wholeSequence</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"r"</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC151" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="java"><span class="idiff left right">          </span></span>
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<td class="diff-line-num new old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="java">         <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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155
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="java">         <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">write</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">headerFile</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"\n"</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC157" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="java">         <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">></span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
159
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<td class="diff-line-num new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="java">         <span class="c1" style="color: #998; font-style: italic;">// reading in left to right</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
160
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<td class="diff-line-num new_line old" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="java">         <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">seek</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">);</span><span class="idiff left right">                 </span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="java"><span class="idiff left right">                  </span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
162
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<td class="diff-line-num new_line old" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC162" class="line" lang="java">         <span class="k" style="font-weight: 600;">while</span><span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;"><(</span><span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">))</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">read</span><span class="o" style="font-weight: 600;">())!=-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span><span class="idiff left right">                              </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="java">         <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">seek</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
161
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC161" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC162" class="line" lang="java">         <span class="k" style="font-weight: 600;">while</span><span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;"><(</span><span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">))</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">read</span><span class="o" style="font-weight: 600;">())!=-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
163
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<td class="diff-line-num new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="java">                 <span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;">++;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
164
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<td class="diff-line-num new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
164
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC164" class="line" lang="java">         <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Character</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">isLetter</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">))</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<td class="diff-line-num new_line old" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="java"><span class="idiff left right">                  </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
166
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<td class="diff-line-num new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="java">                    <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">write</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Character</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">toLowerCase</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">));</span></span>
</pre>
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167
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167
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC167" class="line" lang="java">                   <span class="o" style="font-weight: 600;">}</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC168" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span><span class="idiff left right">      </span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
169
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<td class="diff-line-num new_line old" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC169" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC168" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
170
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170
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC170" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
171
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<td class="diff-line-num new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
171
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC171" class="line" lang="java">         <span class="k" style="font-weight: 600;">else</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
172
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<td class="diff-line-num new_line old" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC172" class="line" lang="java">                 <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">seek</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span><span class="idiff left right"> </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="java">                 <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">seek</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
173
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<td class="diff-line-num new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="java">                 <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">pos</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
</td>
<td class="diff-line-num new_line old" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC174" class="line" lang="java">                 <span class="k" style="font-weight: 600;">while</span><span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;"><(</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">))</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">read</span><span class="o" style="font-weight: 600;">())!=-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span><span class="idiff left right">                              </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="java">                 <span class="k" style="font-weight: 600;">while</span><span class="o" style="font-weight: 600;">((</span><span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;"><(</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">))</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">read</span><span class="o" style="font-weight: 600;">())!=-</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
175
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<td class="diff-line-num new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="java">                         <span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;">++;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<td class="diff-line-num new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="java">                         <span class="n" style="color: #333;">pos</span><span class="o" style="font-weight: 600;">--;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
177
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<td class="diff-line-num new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="java">                 <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Character</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">isLetter</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">))</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
178
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<td class="diff-line-num new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
178
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC178" class="line" lang="java">                            <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">write</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Character</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">toLowerCase</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">));</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
179
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<td class="diff-line-num new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="java">                           <span class="o" style="font-weight: 600;">}</span></span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
180
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<td class="diff-line-num new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="java">                 <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">seek</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">pos</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<td class="diff-line-num new_line old" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC181" class="line" lang="java">                 <span class="o" style="font-weight: 600;">}</span><span class="idiff left right"> </span></span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<td class="diff-line-num new_line old" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC182" class="line" lang="java"><span class="idiff left right">                  </span></span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<td class="diff-line-num new_line old" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC183" class="line" lang="java"><span class="idiff left right">                  </span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
181
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC181" class="line" lang="java">                 <span class="o" style="font-weight: 600;">}</span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC182" class="line" lang="java"></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC183" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
184
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<td class="diff-line-num new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
184
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC184" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<td class="diff-line-num new_line old" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC185" class="line" lang="java"><span class="idiff left right">       </span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="java"></span>
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<td class="diff-line-num old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
186
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="java">        <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">close</span><span class="o" style="font-weight: 600;">();</span></span>
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187
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="java">        <span class="n" style="color: #333;">input</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">close</span><span class="o" style="font-weight: 600;">();</span></span>
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188
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="java">    <span class="o" style="font-weight: 600;">}</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="java"><span class="idiff left right">    </span></span>
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="java"><span class="idiff left right">    </span></span>
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<td class="diff-line-num new old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="java"></span>
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<td class="diff-line-num new old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="java"></span>
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<td class="diff-line-num old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">callProgram</span><span class="o" style="font-weight: 600;">()</span> <span class="kd" style="font-weight: 600;">throws</span> <span class="n" style="color: #333;">IOException</span> <span class="o" style="font-weight: 600;">{</span></span>
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192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="java">         <span class="n" style="color: #333;">Runtime</span> <span class="n" style="color: #333;">runtime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Runtime</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getRuntime</span><span class="o" style="font-weight: 600;">();</span><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="java">         <span class="n" style="color: #333;">Runtime</span> <span class="n" style="color: #333;">runtime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Runtime</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getRuntime</span><span class="o" style="font-weight: 600;">();</span></span>
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="java">         <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">fileOffset</span><span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="java">         <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">startOffset</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="java">                 <span class="n" style="color: #333;">fileOffset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">endOffset</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -197,33 +197,38 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="java">         <span class="c1" style="color: #998; font-style: italic;">//long offset = sequenceOffset + fileOffset - headerFile.length();</span></span>
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<td class="diff-line-num old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="java">         <span class="c1" style="color: #998; font-style: italic;">//TODO CHECK offset is ok</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="java">         <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">offset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sequenceOffset</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">fileOffset</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="java"><span class="idiff left right">                          </span></span>
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="java"></span>
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<td class="diff-line-num old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="java">         <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">parameters</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">" "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">resultFileName</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">" "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">maxSolutions</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">" "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">offset</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">" "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">headerFile</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getBytes</span><span class="o" style="font-weight: 600;">().</span><span class="na" style="color: teal;">length</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="java">         <span class="c1" style="color: #998; font-style: italic;">//FIXME to use global exe, add logol generated file as parameter and call logol.exe in prolog dir</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="java">         <span class="n" style="color: #333;">parameters</span><span class="o" style="font-weight: 600;">+=</span><span class="s" style="color: #d14;">" "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">prologFile</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">" "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">savFile</span><span class="o" style="font-weight: 600;">;</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="java">         <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Call program with params: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">parameters</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num new_line old" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="java"><span class="idiff left right">          </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="java">         <span class="n" style="color: #333;">Process</span> <span class="n" style="color: #333;">logol</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">runtime</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">exec</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">executable</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">parameters</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="java">        <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="java">         <span class="n" style="color: #333;">PrintStream</span> <span class="n" style="color: #333;">os</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">PrintStream</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getOutputStream</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="java">         <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">println</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">""</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="java">         <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">flush</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="java"><span class="idiff left right">                          </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="java">         <span class="n" style="color: #333;">StreamGobbler</span> <span class="n" style="color: #333;">s1</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">StreamGobbler</span> <span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"stdin"</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getInputStream</span> <span class="o" style="font-weight: 600;">());</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="java">         <span class="n" style="color: #333;">StreamGobbler</span> <span class="n" style="color: #333;">s2</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">StreamGobbler</span> <span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"stderr"</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getErrorStream</span> <span class="o" style="font-weight: 600;">());</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="java">         <span class="n" style="color: #333;">s1</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">start</span> <span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="java">         <span class="n" style="color: #333;">s2</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">start</span> <span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="java">         <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"start program execution "</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="java">         <span class="n" style="color: #333;">logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">waitFor</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="java">         </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="java">                 <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">status_code</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">exitValue</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="java">                 <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">status_code</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">){</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="java">                         <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">error</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Program exited with wrong status code: "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">status_code</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="java">                         <span class="k" style="font-weight: 600;">throw</span> <span class="k" style="font-weight: 600;">new</span> <span class="nf" style="color: #900; font-weight: 600;">IOException</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Program exited with wrong status code"</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="java">                 <span class="o" style="font-weight: 600;">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="java">                 <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"program is over, results are available in file "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">resultFileName</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC226" class="line" lang="java">                 <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">close</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">InterruptedException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="java">                 <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">error</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Error during execution "</span><span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span><span class="idiff left right">               </span></span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="java"><span class="idiff left right">          </span></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="java"> <span class="kd" style="font-weight: 600;">private</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">createTree</span><span class="o" style="font-weight: 600;">()</span> <span class="kd" style="font-weight: 600;">throws</span> <span class="n" style="color: #333;">IOException</span> <span class="o" style="font-weight: 600;">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,17 +239,17 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="java">         <span class="k" style="font-weight: 600;">case</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">:</span> <span class="o" style="font-weight: 600;">{</span> <span class="n" style="color: #333;">lv_type</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"protein"</span><span class="o" style="font-weight: 600;">;</span> <span class="k" style="font-weight: 600;">break</span><span class="o" style="font-weight: 600;">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="java">         <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Create tree for "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">outputFile</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="java"><span class="idiff left right">          </span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="java">         <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">suffixPath</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">""</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="java">         <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getSuffixPath</span><span class="o" style="font-weight: 600;">()!=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span><span class="idiff left right">                       </span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="java">         <span class="k" style="font-weight: 600;">if</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getSuffixPath</span><span class="o" style="font-weight: 600;">()!=</span><span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="java">                 <span class="n" style="color: #333;">suffixPath</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">Logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getSuffixPath</span><span class="o" style="font-weight: 600;">()+</span><span class="n" style="color: #333;">System</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getProperty</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Constants</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">FILESEPARATORPROPERTY</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="java">                 <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">debug</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Create tree with path: "</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">suffixPath</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="java">         <span class="k" style="font-weight: 600;">else</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="java">                 <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">warn</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user"</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="java"><span class="idiff left right">          </span></span>
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="java">         <span class="n" style="color: #333;">Runtime</span> <span class="n" style="color: #333;">runtime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Runtime</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getRuntime</span><span class="o" style="font-weight: 600;">();</span><span class="idiff left right">      </span></span>
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="java"></span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="java">         <span class="n" style="color: #333;">Runtime</span> <span class="n" style="color: #333;">runtime</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Runtime</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getRuntime</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="java">         <span class="n" style="color: #333;">String</span> <span class="n" style="color: #333;">command</span> <span class="o" style="font-weight: 600;">=</span> <span class="kc" style="font-weight: 600;">null</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="java">         <span class="k" style="font-weight: 600;">switch</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">Logol</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getSuffixTool</span><span class="o" style="font-weight: 600;">())</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="java">         <span class="k" style="font-weight: 600;">case</span> <span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -276,7 +281,7 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="java">                         <span class="n" style="color: #333;">PrintStream</span> <span class="n" style="color: #333;">os</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">PrintStream</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">mkvtree</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getOutputStream</span><span class="o" style="font-weight: 600;">());</span></span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="java">                         <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">println</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">""</span><span class="o" style="font-weight: 600;">);</span></span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="java">                         <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">flush</span><span class="o" style="font-weight: 600;">();</span></span>
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="java"><span class="idiff left right">                          </span></span>
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="java">                         <span class="n" style="color: #333;">StreamGobbler</span> <span class="n" style="color: #333;">s1</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">StreamGobbler</span> <span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"stdin"</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">mkvtree</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getInputStream</span> <span class="o" style="font-weight: 600;">());</span></span>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="java">                         <span class="n" style="color: #333;">StreamGobbler</span> <span class="n" style="color: #333;">s2</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">StreamGobbler</span> <span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"stderr"</span><span class="o" style="font-weight: 600;">,</span> <span class="n" style="color: #333;">mkvtree</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getErrorStream</span> <span class="o" style="font-weight: 600;">());</span></span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="java">                         <span class="n" style="color: #333;">s1</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">start</span> <span class="o" style="font-weight: 600;">();</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -294,7 +299,7 @@ public class SequenceAnalyser extends Thread {</td>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="java">                         <span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">error</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"could not create Tree "</span><span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="java">                 <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="java">         <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="java"><span class="idiff left right">          </span></span>
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="java"> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="java"></span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="java"><span class="o" style="font-weight: 600;">}</span></span></pre>
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</li>
<li id="b023f75978a60c77ff9c20f2d08adbf1e080fee7">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#b023f75978a60c77ff9c20f2d08adbf1e080fee7"><strong>src/org/irisa/genouest/logol/test/GrammarTest.java</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2350" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2350" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2350,6 +2350,52 @@ public class GrammarTest {</td>
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<pre style="margin: 0;"> <span id="LC2350" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC2351" class="line" lang="java">        <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;"> <span id="LC2352" class="line" lang="java"></span>
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<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC2353" class="line" lang="java">                <span class="nd">@Test</span></span>
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<pre style="margin: 0;">+<span id="LC2354" class="line" lang="java">        <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">testEndOfStream1</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2355" class="line" lang="java"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="2356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2356" class="line" lang="java">            <span class="n" style="color: #333;">init</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC2357" class="line" lang="java"></span>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2358
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2358" class="line" lang="java">            <span class="n" style="color: #333;">Vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]></span> <span class="n" style="color: #333;">result</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">Vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]>();</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2359
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2359" class="line" lang="java">            <span class="n" style="color: #333;">result</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">add</span><span class="o" style="font-weight: 600;">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]</span> <span class="o" style="font-weight: 600;">{</span><span class="s" style="color: #d14;">"LogolVAR_1"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"32"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"38"</span><span class="o" style="font-weight: 600;">});</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2360" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2360
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2360" class="line" lang="java">                        <span class="n" style="color: #333;">result</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">add</span><span class="o" style="font-weight: 600;">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]</span> <span class="o" style="font-weight: 600;">{</span><span class="s" style="color: #d14;">"LogolVAR_2"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"39"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"40"</span><span class="o" style="font-weight: 600;">});</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2361
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2361" class="line" lang="java">            <span class="n" style="color: #333;">execute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"test.fasta"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"end_of_stream1.logol"</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2362" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2362
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2362" class="line" lang="java"></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2363" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2363
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2363" class="line" lang="java">            <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2364" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2364
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2364" class="line" lang="java">                <span class="n" style="color: #333;">checkResult</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">result</span><span class="o" style="font-weight: 600;">,</span><span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2365
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2365" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">ParserConfigurationException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2366" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2366
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2366" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2367
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2367" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">SAXException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2368" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2368
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2368" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2369" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2369
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2369" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">IOException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2370
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2370" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2371
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2371" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">TransformerException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2372
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2372" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2373
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2373" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2374
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2374" class="line" lang="java">        <span class="o" style="font-weight: 600;">}</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2375" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2375
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2375" class="line" lang="java"></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2376
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2376" class="line" lang="java">                <span class="nd">@Test</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2377
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2377" class="line" lang="java">        <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">testEndOfStream2</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2378" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2378
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2378" class="line" lang="java"></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2379
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2379" class="line" lang="java">            <span class="n" style="color: #333;">init</span><span class="o" style="font-weight: 600;">();</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2380" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2380
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2380" class="line" lang="java"></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2381
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2381" class="line" lang="java">            <span class="n" style="color: #333;">Vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]></span> <span class="n" style="color: #333;">result</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">Vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]>();</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2382
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2382" class="line" lang="java">            <span class="n" style="color: #333;">result</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">add</span><span class="o" style="font-weight: 600;">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]</span> <span class="o" style="font-weight: 600;">{</span><span class="s" style="color: #d14;">"LogolVAR_1"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"32"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"38"</span><span class="o" style="font-weight: 600;">});</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2383
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2383" class="line" lang="java">                        <span class="n" style="color: #333;">result</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">add</span><span class="o" style="font-weight: 600;">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">String</span><span class="o" style="font-weight: 600;">[]</span> <span class="o" style="font-weight: 600;">{</span><span class="s" style="color: #d14;">"LogolVAR_2"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"39"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"40"</span><span class="o" style="font-weight: 600;">});</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2384
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2384" class="line" lang="java">            <span class="n" style="color: #333;">execute</span><span class="o" style="font-weight: 600;">(</span><span class="s" style="color: #d14;">"test.fasta"</span><span class="o" style="font-weight: 600;">,</span><span class="s" style="color: #d14;">"end_of_stream2.logol"</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2385
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2385" class="line" lang="java"></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2386
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2386" class="line" lang="java">            <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2387" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2387
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2387" class="line" lang="java">                <span class="n" style="color: #333;">checkNoMatch</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">result</span><span class="o" style="font-weight: 600;">,</span><span class="mi" style="color: #099;">0</span><span class="o" style="font-weight: 600;">);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2388" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2388
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2388" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">ParserConfigurationException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2389
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2389" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2390
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2390" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">SAXException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2391
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2391" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2392
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2392" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">IOException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2393
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2393" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2394
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2394" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span> <span class="k" style="font-weight: 600;">catch</span> <span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">TransformerException</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">)</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2395
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2395" class="line" lang="java">                <span class="n" style="color: #333;">fail</span><span class="o" style="font-weight: 600;">(</span><span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">.</span><span class="na" style="color: teal;">getMessage</span><span class="o" style="font-weight: 600;">());</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2396
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2396" class="line" lang="java">            <span class="o" style="font-weight: 600;">}</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2397
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2397" class="line" lang="java">        <span class="o" style="font-weight: 600;">}</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2398
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2398" class="line" lang="java"></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2353
</td>
<td class="diff-line-num new_line" data-linenumber="2399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2399
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2399" class="line" lang="java">         <span class="nd">@Test</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2354" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2354
</td>
<td class="diff-line-num new_line" data-linenumber="2400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2400
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2400" class="line" lang="java">         <span class="kd" style="font-weight: 600;">public</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">testRubyCassiopee</span><span class="o" style="font-weight: 600;">()</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2355
</td>
<td class="diff-line-num new_line" data-linenumber="2401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2401
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2401" class="line" lang="java">                <span class="k" style="font-weight: 600;">try</span> <span class="o" style="font-weight: 600;">{</span></span>
</pre>
</td>
</tr>

</table>
<br>
</li>
<li id="eceebe933406e8fd5e17ade3647367432da281a1">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#eceebe933406e8fd5e17ade3647367432da281a1"><strong>test/end_of_stream1.logol</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 12px;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">def:{</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">morphism(foo,a,g)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">}</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">mod1()==>"ccaccat",!("taa"|"tga"|"tag"):{#[2,2]}</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">mod1()==*>SEQ1</span></pre>
</td>
</tr>

</table>
<br>
</li>
<li id="9934dc28ebfd136e1e7d165ca1c8a6dad4dab8c4">
<a href="https://salsa.debian.org/med-team/logol/compare/874d09b1227f4bf0b72d5f634e0797dc135656d0...c5fa9610279b633f0d332737226acc3a966cd095#9934dc28ebfd136e1e7d165ca1c8a6dad4dab8c4"><strong>test/end_of_stream2.logol</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 12px;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">def:{</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">morphism(foo,a,g)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">}</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">mod1()==>"ccaccat",!("taa"|"tga"|"tag"):{#[3,3]}</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">mod1()==*>SEQ1</span></pre>
</td>
</tr>

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