[Debian-med-packaging] Bug#474416: libgenome - FTBFS: error: 'memcpy' was not declared in this scope

[Andreas Tille]

On Mon, 7 Apr 2008, Bastian Blank wrote:

> found 474416 1.3.0-4

I'm a little bit retired of this reopen pingpong.  Could anybody with
gcc-4.3 experience provide a _fully_ _working_ patch?  I'm afraid we might
go up to package version -17 or whatever until this really gets reslved. :-(

Thanks for your work on this anyway

            Andreas.

> thanks
>
> There was an error while trying to autobuild your package:
>
>> Automatic build of libgenome_1.3.0-4 on debian-31.osdl.marist.edu by sbuild/s390 98
> [...]
>>  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -g -Wall -O2 -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1
>> /bin/sh ../libtool --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I..    -g -Wall -O2 -c -o gnSourceFactory.lo gnSourceFactory.cpp
>>  g++ -DHAVE_CONFIG_H -I. -I.. -I.. -g -Wall -O2 -c gnSourceFactory.cpp  -fPIC -DPIC -o .libs/gnSourceFactory.o
>> In file included from ../libGenome/gnSequence.h:29,
>>                  from ../libGenome/gnFASSource.h:25,
>>                  from gnSourceFactory.cpp:19:
>> ../libGenome/gnStringSpec.h: In member function 'virtual boolean genome::gnStringSpec::Read(gnSeqI, gnSeqC*, gnSeqI&) const':
>> ../libGenome/gnStringSpec.h:99: error: 'memcpy' was not declared in this scope
>> In file included from ../libGenome/gnSequence.h:31,
>>                  from ../libGenome/gnFASSource.h:25,
>>                  from gnSourceFactory.cpp:19:
>> ../libGenome/gnCompare.h: In member function 'boolean genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const':
>> ../libGenome/gnCompare.h:142: warning: array subscript has type 'char'
>> make[3]: *** [gnSourceFactory.lo] Error 1
>> make[3]: Leaving directory `/build/buildd/libgenome-1.3.0/libGenome'
>> make[2]: *** [all-recursive] Error 1
>> make[2]: Leaving directory `/build/buildd/libgenome-1.3.0'
>> make[1]: *** [all] Error 2
>> make[1]: Leaving directory `/build/buildd/libgenome-1.3.0'
>> make: *** [debian/stamp-makefile-build] Error 2
>> dpkg-buildpackage: failure: debian/rules build gave error exit status 2
>> ******************************************************************************
>> Build finished at 20080407-0724
>> FAILED [dpkg-buildpackage died]
>
>
>
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