[Debian-med-packaging] pdb2pqr_1.3.0-1_amd64.changes is NEW
Debian Installer
installer at ftp-master.debian.org
Sun Jun 29 00:17:03 UTC 2008
(new) pdb2pqr-doc_1.3.0-1_all.deb optional doc
example files accompanying pdb2pqr
Files containing protein structures tend to become large very quickly and
most users of this package will refrain from their installation, particularly
on larger clusters.
(new) pdb2pqr_1.3.0-1.diff.gz optional science
(new) pdb2pqr_1.3.0-1.dsc optional science
(new) pdb2pqr_1.3.0-1_amd64.deb optional science
Preparation of protein structures for electrostatics calculations
PDB2PQR is a Python software package that automates many of the common
tasks of preparing structures for continuum electrostatics calculations.
It thus provides a platform-independent utility for converting protein files
in PDB format to PQR format. These tasks include:
* Adding a limited number of missing heavy atoms to biomolecular structures
* Determining side-chain pKas
* Placing missing hydrogens
* Optimizing the protein for favorable hydrogen bonding
* Assigning charge and radius parameters from a variety of force fields
(new) pdb2pqr_1.3.0.orig.tar.gz optional science
(new) propka_1.3.0-1_amd64.deb optional science
Modify the protonation state of protein structures
PropKa is a tool to modify the protonation state of a protein structure
in the Protein Data Bank (PDB) format to match a given pKa value.
It can also be used to refine NMR structures, which often yield
inaccurate pKa values for some residues.
.
The PROPKA method is described in Hui Li, Andrew D. Robertson, and
Jan H. Jensen "Very Fast Empirical Prediction and Interpretation of
Protein pKa Values" Proteins, 2005, 61, 704-721
Changes: pdb2pqr (1.3.0-1) unstable; urgency=low
.
[ Steffen Möller ]
* Initial release (Closes: #416269)
* Added a compatibility patch to enable building with gcc-4.3
* Disabled all build tests because they require internet access
.
[ Manuel Prinz ]
* Updated Standards-Version to 3.8.0
* Wrote man page for pdb2pqr(1), psize(1) and propka(1)
* Added binary package for propka (Closes: #420734)
* Moved API documentation to pdb2pqr-doc package
Override entries for your package:
Announcing to debian-devel-changes at lists.debian.org
Closing bugs: 416269 420734
Your package contains new components which requires manual editing of
the override file. It is ok otherwise, so please be patient. New
packages are usually added to the override file about once a week.
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