[Debian-med-packaging] Bug#543236: Make package ready for python 2.6

[Bhavani Shankar]

Package: python-biopython
Version: 1.51final-1
Severity: wishlist
Tags: patch
User: ubuntu-devel at lists.ubuntu.com
Usertags: origin-ubuntu karmic ubuntu-patch


Hello dear maintainer,

In Ubuntu, we've applied the attached patch to achieve the following:

  * Python 2.6 transition.

We thought you might be interested in doing the same. 


-- System Information:
Debian Release: lenny/sid
  APT prefers hardy-updates
  APT policy: (500, 'hardy-updates'), (500, 'hardy-security'), (500, 'hardy-proposed'), (500, 'hardy')
Architecture: i386 (i686)

Kernel: Linux 2.6.24-24-generic (SMP w/2 CPU cores)
Locale: LANG=en_IN, LC_CTYPE=en_IN (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
-------------- next part --------------
diff -u python-biopython-1.51final/debian/python-biopython.files python-biopython-1.51final/debian/python-biopython.files
--- python-biopython-1.51final/debian/python-biopython.files
+++ python-biopython-1.51final/debian/python-biopython.files
@@ -1 +1 @@
-usr/lib/python*/site-packages/Bio
+usr/lib/python*/*-packages/Bio
diff -u python-biopython-1.51final/debian/rules python-biopython-1.51final/debian/rules
--- python-biopython-1.51final/debian/rules
+++ python-biopython-1.51final/debian/rules
@@ -18,13 +18,13 @@
 	dh_testdir
 	dh_testroot
 
-	yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp
+	yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp --install-layout=deb
 
 # <bugfix>
-	chmod 644 debian/python$*-tmp/usr/lib/python$*/site-packages/Bio/EUtils/DTDs/*dtd
-	chmod 644 debian/python$*-tmp/usr/lib/python$*/site-packages/Bio/Entrez/DTDs/*dtd
+	chmod 644 debian/python$*-tmp/usr/lib/python$*/*-packages/Bio/EUtils/DTDs/*dtd
+	chmod 644 debian/python$*-tmp/usr/lib/python$*/*-packages/Bio/Entrez/DTDs/*dtd
 
-	for i in `find ./debian/python$*-tmp/usr/lib/python$*/site-packages -name "*.py"`; do	\
+	for i in `find ./debian/python$*-tmp/usr/lib/python$*/*-packages -name "*.py"`; do	\
 		sed -ir "s/^#\!\/usr\/bin\/env python\(2\.[234]\)\?$$//" $$i;			\
 		sed -ir "s/^#\![ ]*\/usr\/bin\/python[ ]*\(-OO\)\?\(-i\)\?$$//" $$i;		\
 		$(RM) $$i\r;									\
diff -u python-biopython-1.51final/debian/python-biopython-sql.files python-biopython-1.51final/debian/python-biopython-sql.files
--- python-biopython-1.51final/debian/python-biopython-sql.files
+++ python-biopython-1.51final/debian/python-biopython-sql.files
@@ -1 +1 @@
-usr/lib/python*/site-packages/BioSQL
+usr/lib/python*/*-packages/BioSQL