[Debian-med-packaging] Bug#536956: t-coffee: FTBFS: dpkg-gencontrol: error: error occurred while parsing Suggests field: boxshade, seaview, t-coffee-doc, t-coffee-examples

[Lucas Nussbaum]

Package: t-coffee
Version: 5.72-1
Severity: serious
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20090713 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
>  /usr/bin/fakeroot debian/rules binary
> test -x debian/rules
> dh_testroot
> dh_clean -k 
> dh_installdirs -A 
> mkdir -p "."
> DEB_MAKE_CHECK_TARGET unset, not running checks
> DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
> dh_installdirs -pt-coffee-examples 
> dh_installdirs -pt-coffee-doc 
> dh_installdocs -pt-coffee-examples   
> dh_installexamples -pt-coffee-examples 
> dh_installman -pt-coffee-examples  
> dh_installinfo -pt-coffee-examples  
> dh_installmenu -pt-coffee-examples 
> dh_installcron -pt-coffee-examples 
> dh_installinit -pt-coffee-examples   
> dh_installdebconf -pt-coffee-examples 
> dh_installemacsen -pt-coffee-examples   
> dh_installcatalogs -pt-coffee-examples 
> dh_installpam -pt-coffee-examples 
> dh_installlogrotate -pt-coffee-examples 
> dh_installlogcheck -pt-coffee-examples 
> dh_installchangelogs -pt-coffee-examples   
> dh_installudev -pt-coffee-examples 
> dh_lintian -pt-coffee-examples 
> dh_install -pt-coffee-examples  
> dh_link -pt-coffee-examples  
> dh_installmime -pt-coffee-examples 
> dh_installdocs -pt-coffee-doc   
> dh_installexamples -pt-coffee-doc 
> dh_installman -pt-coffee-doc  
> dh_installinfo -pt-coffee-doc  
> dh_installmenu -pt-coffee-doc 
> dh_installcron -pt-coffee-doc 
> dh_installinit -pt-coffee-doc   
> dh_installdebconf -pt-coffee-doc 
> dh_installemacsen -pt-coffee-doc   
> dh_installcatalogs -pt-coffee-doc 
> dh_installpam -pt-coffee-doc 
> dh_installlogrotate -pt-coffee-doc 
> dh_installlogcheck -pt-coffee-doc 
> dh_installchangelogs -pt-coffee-doc   
> dh_installudev -pt-coffee-doc 
> dh_lintian -pt-coffee-doc 
> dh_install -pt-coffee-doc  
> dh_link -pt-coffee-doc  
> dh_installmime -pt-coffee-doc 
> dh_strip -pt-coffee-examples  
> dh_compress -pt-coffee-examples  
> dh_fixperms -pt-coffee-examples  
> dh_makeshlibs -pt-coffee-examples  
> dh_strip -pt-coffee-doc  
> dh_compress -pt-coffee-doc  
> dh_fixperms -pt-coffee-doc  
> dh_makeshlibs -pt-coffee-doc  
> dh_installdeb -pt-coffee-examples 
> dh_perl -pt-coffee-examples 
> dh_shlibdeps -pt-coffee-examples    
> dh_installdeb -pt-coffee-doc 
> dh_perl -pt-coffee-doc 
> dh_shlibdeps -pt-coffee-doc    
> dh_gencontrol -pt-coffee-examples  
> dh_md5sums -pt-coffee-examples 
> dh_builddeb -pt-coffee-examples 
> dpkg-deb: building package `t-coffee-examples' in `../t-coffee-examples_5.72-1_all.deb'.
> dh_gencontrol -pt-coffee-doc  
> dh_md5sums -pt-coffee-doc 
> dh_builddeb -pt-coffee-doc 
> dpkg-deb: building package `t-coffee-doc' in `../t-coffee-doc_5.72-1_all.deb'.
> dh_installdirs -pt-coffee 
> dh_installdocs -pt-coffee   
> dh_installexamples -pt-coffee 
> dh_installman -pt-coffee  
> dh_installinfo -pt-coffee  
> dh_installmenu -pt-coffee 
> dh_installcron -pt-coffee 
> dh_installinit -pt-coffee   
> dh_installdebconf -pt-coffee 
> dh_installemacsen -pt-coffee   
> dh_installcatalogs -pt-coffee 
> dh_installpam -pt-coffee 
> dh_installlogrotate -pt-coffee 
> dh_installlogcheck -pt-coffee 
> dh_installchangelogs -pt-coffee   
> dh_installudev -pt-coffee 
> dh_lintian -pt-coffee 
> dh_install -pt-coffee  
> dh_link -pt-coffee  
> dh_installmime -pt-coffee 
> dh_strip -pt-coffee  
> dh_compress -pt-coffee  
> dh_fixperms -pt-coffee  
> dh_makeshlibs -pt-coffee  
> dh_installdeb -pt-coffee 
> dh_perl -pt-coffee 
> dh_shlibdeps -pt-coffee    
> dpkg-shlibdeps: warning: debian/t-coffee/usr/bin/t_coffee contains an unresolvable reference to symbol __ctype_b_loc at GLIBC_2.3: it's probably a plugin.
> dpkg-shlibdeps: warning: 71 other similar warnings have been skipped (use -v to see them all).
> dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/t-coffee/usr/bin/t_coffee" were not uselessly linked against it (they use none of its symbols).
> dpkg-shlibdeps: warning: dependency on libc.so.6 could be avoided if "debian/t-coffee/usr/bin/t_coffee" were not uselessly linked against it (they use none of its symbols).
> dh_gencontrol -pt-coffee  
> dpkg-gencontrol: warning: can't parse dependency t-coffee-examples
>           dialign-tx
> dpkg-gencontrol: error: error occurred while parsing Suggests field: boxshade, seaview, t-coffee-doc, t-coffee-examples
>           dialign-tx, kalign, mafft, muscle, poa, probcons, clustalw
> dh_gencontrol: dpkg-gencontrol returned exit code 255
> make: *** [binary-makedeb-IMPL/t-coffee] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2009/07/13/t-coffee_5.72-1_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |