[Debian-med-packaging] Bug#536958: gdcm: FTBFS: ld: cannot find -lvtkCommonJava

Tue Jul 14 12:46:46 UTC 2009

Package: gdcm
Version: 2.0.12-5
Severity: serious
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20090713 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

You also probably want to fix "sh: gs: command not found" even if it
doesn't cause the build to fail.

Relevant part:
> sh: gs: command not found
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> /build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/Source/Common/gdcmSmartPointer.h:24: Warning: explicit link request to 'include' could not be resolved
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 87%] Built target vtkgdcm
> make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 87%] make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> Python Wrapping - generating vtkgdcmPythonInit.cxx
> [ 87%] Python Wrapping - generating vtkGDCMTestingPython.cxx
> make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 87%] Python Wrapping - generating vtkGDCMImageReaderPython.cxx
> [ 87%] Scanning dependencies of target gdcmviewer
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> Python Wrapping - generating vtkGDCMImageWriterPython.cxx
> make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 87%] Scanning dependencies of target vtkgdcmsharpglue
> [ 87%] make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> sh: gs: command not found
> [ 87%] [ 88%] make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> Error: Problems running epstopdf. Check your TeX installation!
> Java Wrappings - generating vtkGDCMTestingJava.cxx
> Python Wrapping - generating vtkGDCMMedicalImagePropertiesPython.cxx
> Java Wrappings - generating vtkGDCMThreadedImageReader2Java.cxx
> Building CXX object Utilities/VTK/Applications/CMakeFiles/gdcmviewer.dir/gdcmviewer.cxx.o
> Scanning dependencies of target gdcm2vtk
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 89%] make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 89%] Java Wrappings - generating vtkGDCMImageReaderJava.cxx
> [ 89%] [ 89%] Python Wrapping - generating vtkGDCMThreadedImageReaderPython.cxx
> Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmsharpglue.dir/vtkgdcmCSHARP_wrap.cxx.o
> Java Wrappings - generating vtkGDCMImageWriterJava.cxx
> [ 89%] Java Wrappings - generating vtkGDCMMedicalImagePropertiesJava.cxx
> [ 89%] [ 89%] Python Wrapping - generating vtkImageColorViewerPython.cxx
> [ 89%] [ 89%] Python Wrapping - generating vtkImageMapToWindowLevelColors2Python.cxx
> [ 89%] Python Wrapping - generating vtkImageYBRToRGBPython.cxx
> Building CXX object Utilities/VTK/Applications/CMakeFiles/gdcm2vtk.dir/gdcm2vtk.cxx.o
> Java Wrappings - generating vtkGDCMThreadedImageReaderJava.cxx
> [ 90%] Python Wrapping - generating vtkImageRGBToYBRPython.cxx
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 90%] [ 91%] Python Wrapping - generating vtkGDCMPolyDataReaderPython.cxx
> Java Wrappings - generating vtkImageColorViewerJava.cxx
> [ 91%] [ 91%] Python Wrapping - generating vtkLookupTable16Python.cxx
> Python Wrapping - generating vtkImageMapToColors16Python.cxx
> [ 92%] Python Wrapping - generating vtkGDCMThreadedImageReader2Python.cxx
> Scanning dependencies of target vtkgdcmPythonD
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 92%] [ 92%] [ 92%] Java Wrappings - generating vtkImageMapToWindowLevelColors2Java.cxx
> Java Wrappings - generating vtkImageYBRToRGBJava.cxx
> make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> Java Wrappings - generating vtkImageRGBToYBRJava.cxx
> [ 92%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkGDCMTestingPython.cxx.o
> [ 92%] [ 93%] Java Wrappings - generating vtkLookupTable16Java.cxx
> [ 93%] Java Wrappings - generating vtkImageMapToColors16Java.cxx
> Java Wrappings - generating vtkGDCMPolyDataReaderJava.cxx
> [ 93%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkGDCMImageReaderPython.cxx.o
> [ 93%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkGDCMImageWriterPython.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> Scanning dependencies of target vtkgdcmJava
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> make[3]: Entering directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 94%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMTestingJava.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> /build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/Source/Common/gdcmString.h:80: Warning: Found unknown command `\0'
> /build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/Source/Common/gdcmString.h:80: Warning: Found unknown command `\0'
> [ 94%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMImageReaderJava.cxx.o
> [ 94%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkGDCMMedicalImagePropertiesPython.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 95%] [ 95%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkImageColorViewerPython.cxx.o
> Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkGDCMThreadedImageReaderPython.cxx.o
> sh: gs: command not found
> Linking CXX shared module ../../bin/libgdcmjni.so
> Linking CXX executable ../../../bin/gdcm2vtk
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 95%] [ 95%] Linking CXX executable ../../../bin/gdcmviewer
> Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkImageMapToWindowLevelColors2Python.cxx.o
> Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMImageWriterJava.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 95%] [ 95%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkImageYBRToRGBPython.cxx.o
> Built target gdcmjni
> [ 95%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMMedicalImagePropertiesJava.cxx.o
> sh: gs: command not found
> [ 96%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkImageRGBToYBRPython.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 96%] make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkGDCMPolyDataReaderPython.cxx.o
> [ 96%] [ 96%] Built target gdcmviewer
> [ 96%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMThreadedImageReaderJava.cxx.o
> Built target gdcm2vtk
> [ 96%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkLookupTable16Python.cxx.o
> [ 97%] [ 97%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkImageColorViewerJava.cxx.o
> [ 97%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkImageMapToColors16Python.cxx.o
> Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkImageMapToWindowLevelColors2Java.cxx.o
> [ 97%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkGDCMThreadedImageReader2Python.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 97%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkImageYBRToRGBJava.cxx.o
> [ 98%] Linking CXX shared module ../../bin/libvtkgdcmsharpglue.so
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 98%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkImageRGBToYBRJava.cxx.o
> Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmPythonD.dir/vtkgdcmPythonInit.cxx.o
> [ 99%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMPolyDataReaderJava.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> /build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/Source/Common/gdcmTesting.h:40: Warning: Found unknown command `\0'
> dcm::ImageWriter...
> Generating docs for compound gdcm::ImplicitDataElement...
> Generating docs for compound gdcm::IOD...
> Generating docs for compound gdcm::IODEntry...
> Generating docs for compound gdcm::IODs...
> Generating docs for compound gdcm::IPPSorter...
> Generating docs for compound gdcm::Item...
> Generating docs for compound gdcm::JPEG12Codec...
> Generating docs for compound gdcm::JPEG16Codec...
> Generating docs for compound gdcm::JPEG2000Codec...
> Generating docs for compound gdcm::JPEG8Codec...
> Generating docs for compound gdcm::JPEGCodec...
> Generating docs for compound gdcm::JPEGLSCodec...
> Generating docs for compound gdcm::LO...
> Generating docs for compound gdcm::LookupTable...
> Generating docs for compound gdcm::MD5...
> Generating docs for compound gdcm::MediaStorage...
> Generating docs for compound gdcm::MemberCommand...
> Generating docs for compound gdcm::Module...
> Generating docs for compound gdcm::ModuleEntry...
> Generating docs for compound gdcm::Modules...
> Generating docs for compound gdcm::NestedModuleEntries...
> Generating docs for compound gdcm::Object...
> Generating docs for compound gdcm::Orientation...
> Generating docs for compound gdcm::Overlay...
> Generating docs for compound gdcm::ParseException...
> Generating docs for compound gdcm::Parser...
> Generating docs for compound gdcm::Patient...
> Generating docs for compound gdcm::PDBElement...
> Generating docs for compound gdcm::PDBHeader...
> Generating docs for compound gdcm::PDFCodec...
> Generating docs for compound gdcm::PersonName...
> Generating docs for compound gdcm::PhotometricInterpretation...
> Generating docs for compound gdcm::PixelFormat...
> Generating docs for compound gdcm::Pixmap...
> Generating docs for compound gdcm::PixmapReader...
> Generating docs for compound gdcm::PixmapToPixmapFilter...
> Generating docs for compound gdcm::PixmapWriter...
> Generating docs for compound gdcm::PNMCodec...
> Generating docs for compound gdcm::Preamble...
> Generating docs for compound gdcm::Printer...
> Generating docs for compound gdcm::PrivateDict...
> Generating docs for compound gdcm::PrivateTag...
> Generating docs for compound gdcm::PVRGCodec...
> Generating docs for compound gdcm::PythonFilter...
> Generating docs for compound gdcm::RAWCodec...
> Generating docs for compound gdcm::Reader...
> Generating docs for compound gdcm::Rescaler...
> Generating docs for compound gdcm::RLECodec...
> Generating docs for compound gdcm::Scanner...
> Generating docs for nested compound gdcm::Scanner::ltstr...
> Generating docs for compound gdcm::SegmentedPaletteColorLookupTable...
> Generating docs for compound gdcm::SequenceOfFragments...
> Generating docs for compound gdcm::SequenceOfItems...
> Generating docs for compound gdcm::SerieHelper...
> Generating docs for nested compound gdcm::SerieHelper::Rule...
> Generating docs for compound gdcm::Series...
> Generating docs for compound gdcm::SHA1...
> Generating docs for compound gdcm::SimpleMemberCommand...
> Generating docs for compound gdcm::SimpleSubjectWatcher...
> Generating docs for compound gdcm::SmartPointer...
> Generating docs for compound gdcm::SOPClassUIDToIOD...
> Generating docs for compound gdcm::Sorter...
> Generating docs for compound gdcm::Spacing...
> Generating docs for compound gdcm::Spectroscopy...
> Generating docs for compound gdcm::SplitMosaicFilter...
> Generating docs for compound gdcm::static_assert_test...
> Generating docs for compound gdcm::STATIC_ASSERTION_FAILURE< true >...
> Generating docs for compound gdcm::String...
> Generating docs for compound gdcm::StringFilter...
> Generating docs for compound gdcm::Study...
> Generating docs for compound gdcm::Subject...
> Generating docs for compound gdcm::SwapCode...
> Generating docs for compound gdcm::SwapperDoOp...
> Generating docs for compound gdcm::SwapperNoOp...
> Generating docs for compound gdcm::System...
> Generating docs for compound gdcm::Table...
> Generating docs for compound gdcm::TableEntry...
> Generating docs for compound gdcm::TableReader...
> Generating docs for compound gdcm::Tag...
> Generating docs for compound gdcm::TagPath...
> Generating docs for compound gdcm::Testing...
> Generating docs for compound gdcm::Trace...
> G[ 99%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkLookupTable16Java.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 99%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkImageMapToColors16Java.cxx.o
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> [ 99%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMThreadedImageReader2Java.cxx.o
> Linking CXX shared library ../../bin/libvtkgdcmPythonD.so
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> make[3]: Leaving directory `/build/user-gdcm_2.0.12-5-amd64-oTRFJi/gdcm-2.0.12/debian/build-python2.5'
> [ 99%] Built target vtkgdcmsharpglue
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> sh: gs: command not found
> Error: Problems running epstopdf. Check your TeX installation!
> Linking CXX shared library ../../bin/libvtkgdcmJava.so
> /usr/bin/ld: cannot find -lvtkCommonJava
> collect2: ld returned 1 exit status

The full build log is available from:
   http://people.debian.org/~lucas/logs/2009/07/13/gdcm_2.0.12-5_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |