[Debian-med-packaging] Bug#533995: Bug#533995: Bug#533995: libtfbs-perl: FTBFS: tests failed

[Charles Plessy]

tag 533995 confirmed
thanks

Le Mon, Jun 22, 2009 at 11:07:45AM +0200, Lucas Nussbaum a écrit :
> 
> I gave it another try on another machine with a slightly different
> config, and now the test simply blocks:
> make[2]: Leaving directory `/tmp/libtfbs-perl-0.5.svn.20080722/Ext'
> PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
> t/01_Matrix..............Name "PDL::SHARE" used only once: possible typo at /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/01_Matrix..............ok                                                  
> t/02_Search..............Name "PDL::SHARE" used only once: possible typo at /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/02_Search..............ok                                                  
> t/03_DB_FlatFileDir......Name "PDL::SHARE" used only once: possible typo at /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/03_DB_FlatFileDir......ok                                                  
> t/04_DB_TRANSFAC.........Name "PDL::SHARE" used only once: possible typo at /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> [BLOCKS HERE]

I figured out it is also a problem of network access. The test uses
/TFBS/DB/TRANSFAC.pm, which connects to
http://www.cbil.upenn.edu/cgi-bin/tess/tess33 for accessing a (proprietary)
database. More details in
http://www.ii.uib.no/svn/lenhard/TFBS/TFBS/DB/TRANSFAC.pm

I will discuss the issue with Upstream.

Bonne journée,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan