[Debian-med-packaging] [SCM] Processing of sequence alignments in SAM and BAM formats. branch, master, updated. debian/0.1.6.dfsg-1-11-g81c994d

[Charles Plessy]

The following commit has been merged in the master branch:
commit 81c994d0666e86a8a8f9107e8a188860ec98ba58
Author: Charles Plessy <charles at anx178.gsc.riken.jp>
Date:   Wed Nov 18 14:31:10 2009 +0900

    Uploaded package after misc. improvements.
    
      - Updated debian/copyright.
      - Polished and install new razip manual page.
      - Better clean the example directory to make the source package
        buildable twice in a row.

diff --git a/debian/changelog b/debian/changelog
index fc387c8..96ad453 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,9 +1,12 @@
-samtools (0.1.7a~dfsg-1) UNRELEASED; urgency=low
+samtools (0.1.7a~dfsg-1) unstable; urgency=low
 
   * New upstream release: new script sam2vcf.pl, and many other changes.
   * Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
+  * Wrote a manual page for razip (debian/razip.1).
+  * Better clean the example directory to make the source package
+    buildable twice in a row (debian/rules).
 
- -- Charles Plessy <plessy at debian.org>  Mon, 16 Nov 2009 14:25:41 +0900
+ -- Charles Plessy <plessy at debian.org>  Tue, 17 Nov 2009 21:38:24 +0900
 
 samtools (0.1.6~dfsg-1) unstable; urgency=low
 
diff --git a/debian/copyright b/debian/copyright
index 0aa176c..d5d88d7 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -3,7 +3,7 @@ Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
 
 Name      :  SAMtools
 Contact   :  SAMtools mailing list <samtools-help at lists.sourceforge.net>
-Source    :  http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.7.tar.bz2
+Source    :  http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.7a.tar.bz2
 
 
 Copyright :  © 2008–2009, Genome Research Ltd.
diff --git a/debian/razip.1 b/debian/razip.1
index 5f0abc7..aa06283 100644
--- a/debian/razip.1
+++ b/debian/razip.1
@@ -1,4 +1,5 @@
 .\" Generated by help2man 1.36 and edited later with vi.
+.\" This manual page was forwarded upstream on November 17th, 2009.
 .TH RAZIP "1" "November 2009" "razip " "Bioinformatics tools"
 .SH NAME
 razip \- Compress and decompress files in RAZip format
diff --git a/debian/rules b/debian/rules
index ee5c351..ac35c57 100755
--- a/debian/rules
+++ b/debian/rules
@@ -7,3 +7,6 @@ CFLAGS += -fPIC
 
 DEB_MAKE_BUILD_TARGET = all all-recur razip lib
 DEB_MAKE_CHECK_TARGET = -C examples all
+
+clean::
+	$(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg
diff --git a/debian/samtools.manpages b/debian/samtools.manpages
index 8c4cbfe..18d2896 100644
--- a/debian/samtools.manpages
+++ b/debian/samtools.manpages
@@ -1 +1,2 @@
 samtools.1
+debian/razip.1

-- 
Processing of sequence alignments in SAM and BAM formats.