[Debian-med-packaging] Bug#557099: minc-tools: nii2mnc fails to convert official NIFTI test images
Jonathan
jsjweb at familyjackson.net
Thu Nov 19 15:20:40 UTC 2009
Package: minc-tools
Version: 2.0.15-3
Severity: important
nii2mnc reports
** ERROR: nifti_convert_nhdr2nim: bad dim[0]
** ERROR (nifti_image_read): cannot create nifti image from header 'avg152T1_LR_nifti.hdr'
Segmentation fault
for test images from the official NIFTI Wiki (http://nifti.nimh.nih.gov/nifti-1/data)
nii2mnc should not complain about bad dim[0] as this nifti field is (imho) semi-irrelevant.
A pre-compiled binary of nii2mnc that ships with a non-debian package (freesurfer) converts the same image without problems.
-- System Information:
Debian Release: 5.0.3
APT prefers stable
APT policy: (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.26-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages minc-tools depends on:
ii csh [c-shell] 20070713-1 Shell with C-like syntax, standard
ii imagemagick 7:6.3.7.9.dfsg2-1~lenny3 image manipulation programs
ii libc6 2.7-18 GNU C Library: Shared libraries
ii libgetopt-tabul 0.3-1 table-driven argument parsing for
ii libhdf5-serial- 1.6.6-4 Hierarchical Data Format 5 (HDF5)
ii libminc2-1 2.0.15-3 MNI medical image format library
ii libnetcdf4 1:3.6.2-3.1 An interface for scientific data a
ii libtext-format- 0.52-21 Perl module for formatting (text)
ii netcdf-bin 1:3.6.2-3.1 Programs for reading and writing N
ii tcsh [c-shell] 6.14.00-7 TENEX C Shell, an enhanced version
ii zlib1g 1:1.2.3.3.dfsg-12 compression library - runtime
minc-tools recommends no packages.
minc-tools suggests no packages.
-- no debconf information
More information about the Debian-med-packaging
mailing list