[Debian-med-packaging] Bug#593704: gdcm: FTBFS: *** glibc detected *** /usr/bin/doxygen: corrupted double-linked list: 0x10554000 ***

Philipp Kern pkern at debian.org
Fri Aug 20 13:44:15 UTC 2010


Source: gdcm
Version: 2.0.16-1
Severity: serious

> sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on poulenc.debian.org
> 
> ╔══════════════════════════════════════════════════════════════════════════════╗
> ║ gdcm 2.0.16-1 (powerpc)                                    18 Aug 2010 14:52 ║
> ╚══════════════════════════════════════════════════════════════════════════════╝
[...]
> [ 96%] GDCM: Creating doxygen doc + tarball
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmPixmapReader.h:66: warning: Example StandardizeFiles.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmPixmapWriter.h:64: warning: Example StandardizeFiles.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:12: warning: Example GenFakeImage.cxx was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:35: warning: Example PatchFile.cxx was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:42: warning: Example SimplePrint.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:45: warning: Example ReformatFile.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:47: warning: Example ManipulateFile.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:49: warning: Example StandardizeFiles.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:51: warning: Example GenerateDICOMDIR.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:52: warning: Example DecompressImage.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:53: warning: Example DecompressJPEGFile.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:55: warning: Example ScanDirectory.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6/Utilities/doxygen/TestsList.txt:56: warning: Example ClinicalTrialIdentificationWorkflow.cs was already documented. Ignoring documentation found here.
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/Common/gdcmString.h:77: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmAnonymizer.h:93: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/DataStructureAndEncodingDefinition/gdcmDataElement.h:122: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/DataStructureAndEncodingDefinition/gdcmDataElement.h:123: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmFileDerivation.h:46: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/Common/gdcmString.h:77: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/Common/gdcmString.h:77: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/Common/gdcmTesting.h:40: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmUIDGenerator.h:53: warning: explicit link request to 'Generate()' could not be resolved
> This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
>  restricted \write18 enabled.
> entering extended mode
> (./_formulas.tex
> LaTeX2e <2009/09/24>
> Babel <v3.8l> and hyphenation patterns for english, usenglishmax, dumylang, noh
> yphenation, loaded.
> 
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmAnonymizer.h:93: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/DataStructureAndEncodingDefinition/gdcmDataElement.h:122: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/DataStructureAndEncodingDefinition/gdcmDataElement.h:123: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmFileDerivation.h:46: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/Common/gdcmString.h:77: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/Common/gdcmTesting.h:40: warning: Found unknown command `\0'
> /build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/Source/MediaStorageAndFileFormat/gdcmUIDGenerator.h:53: warning: explicit link request to 'Generate()' could not be resolved
> *** glibc detected *** /usr/bin/doxygen: corrupted double-linked list: 0x10554000 ***
> ======= Backtrace: =========
> /lib/libc.so.6(+0x82b84)[0xfc61b84]
> /lib/libc.so.6(+0x84794)[0xfc63794]
> /lib/libc.so.6(cfree+0x8c)[0xfc6720c]
> /usr/lib/libstdc++.so.6(_ZdlPv+0x2c)[0xff5d82c]
> /usr/lib/libstdc++.so.6(_ZdaPv+0x24)[0xff5d8a4]
> /usr/bin/doxygen[0x103323e8]
> /usr/bin/doxygen[0x1002cffc]
> /lib/libc.so.6(+0x3e9f4)[0xfc1d9f4]
> /lib/libc.so.6(+0x3ea3c)[0xfc1da3c]
> /lib/libc.so.6(+0x1f640)[0xfbfe640]
> /lib/libc.so.6(+0x1f800)[0xfbfe800]
> ======= Memory map: ========
> 00100000-00103000 r-xp 00100000 00:00 0                                  [vdso]
> 0fbdf000-0fd48000 r-xp 00000000 fd:06 24612                              /lib/libc-2.11.2.so
> 0fd48000-0fd58000 ---p 00169000 fd:06 24612                              /lib/libc-2.11.2.so
> 0fd58000-0fd5c000 r--p 00169000 fd:06 24612                              /lib/libc-2.11.2.so
> 0fd5c000-0fd5d000 rw-p 0016d000 fd:06 24612                              /lib/libc-2.11.2.so
> 0fd5d000-0fd60000 rw-p 0fd5d000 00:00 0 
> 0fd70000-0fd87000 r-xp 00000000 fd:06 24634                              /lib/libgcc_s.so.1
> 0fd87000-0fd96000 ---p 00017000 fd:06 24634                              /lib/libgcc_s.so.1
> 0fd96000-0fd97000 rw-p 00016000 fd:06 24634                              /lib/libgcc_s.so.1
> 0fda7000-0fe51000 r-xp 00000000 fd:06 24611                              /lib/libm-2.11.2.so
> 0fe51000-0fe61000 ---p 000aa000 fd:06 24611                              /lib/libm-2.11.2.so
> 0fe61000-0fe64000 r--p 000aa000 fd:06 24611                              /lib/libm-2.11.2.so
> 0fe64000-0fe65000 rw-p 000ad000 fd:06 24611                              /lib/libm-2.11.2.so
> 0fe75000-0ff99000 r-xp 00000000 fd:06 240046                             /usr/lib/libstdc++.so.6.0.13
> 0ff99000-0ffa8000 ---p 00124000 fd:06 240046                             /usr/lib/libstdc++.so.6.0.13
> 0ffa8000-0ffad000 r--p 00123000 fd:06 240046                             /usr/lib/libstdc++.so.6.0.13
> 0ffad000-0ffaf000 rw-p 00128000 fd:06 240046                             /usr/lib/libstdc++.so.6.0.13
> 0ffaf000-0ffb5000 rw-p 0ffaf000 00:00 0 
> 0ffc5000-0ffdd000 r-xp 00000000 fd:06 24591                              /lib/libpthread-2.11.2.so
> 0ffdd000-0ffec000 ---p 00018000 fd:06 24591                              /lib/libpthread-2.11.2.so
> 0ffec000-0ffed000 r--p 00017000 fd:06 24591                              /lib/libpthread-2.11.2.so
> 0ffed000-0ffee000 rw-p 00018000 fd:06 24591                              /lib/libpthread-2.11.2.so
> 0ffee000-0fff0000 rw-p 0ffee000 00:00 0 
> 10000000-104fb000 r-xp 00000000 fd:06 242103                             /usr/bin/doxygen
> 1050b000-10517000 rw-p 004fb000 fd:06 242103                             /usr/bin/doxygen
> 10517000-11513000 rwxp 10517000 00:00 0                                  [heap]
> 40000000-40020000 r-xp 00000000 fd:06 24613                              /lib/ld-2.11.2.so
> 40020000-40021000 rw-p 40020000 00:00 0 
> 40021000-40022000 r--p 00021000 fd:06 24613                              /lib/ld-2.11.2.so
> 40022000-40023000 rw-p 00022000 fd:06 24613                              /lib/ld-2.11.2.so
> 4002d000-40030000 rw-p 4002d000 00:00 0 
> 40223000-40324000 rw-p 40223000 00:00 0 
> 40365000-405e9000 rw-p 40365000 00:00 0 
> 4062a000-408ae000 rw-p 4062a000 00:00 0 
> 409af000-40ab0000 rw-p 409af000 00:00 0 
> 40ab0000-40ab1000 ---p 40ab0000 00:00 0 
> 40ab1000-40eb0000 rw-p 40ab1000 00:00 0 
> 40eb0000-40eb1000 ---p 40eb0000 00:00 0 
> 40eb1000-412b0000 rw-p 40eb1000 00:00 0 
> 412b0000-412b1000 ---p 412b0000 00:00 0 
> 412b1000-416b0000 rw-p 412b1000 00:00 0 
> 41700000-41721000 rw-p 41700000 00:00 0 
> 41721000-41800000 ---p 41721000 00:00 0 
> fffea000-fffff000 rw-p ffffffeb000 00:00 0                               [stack]
> Aborted
> make[3]: *** [Utilities/doxygen/html/index.html] Error 134
> make[2]: *** [Utilities/doxygen/CMakeFiles/GDCMDoxygenDoc.dir/all] Error 2
> make[1]: *** [all] Error 2
> make: *** [debian/build-python2.6-stamp] Error 2
> dpkg-buildpackage: error: debian/rules build gave error exit status 2
> make[3]: Leaving directory `/build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6'
> make[2]: Leaving directory `/build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6'
> make[1]: Leaving directory `/build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k/gdcm-2.0.16/debian/build-python2.6'
> ────────────────────────────────────────────────────────────────────────────────
> Build finished at 20100818-1513
> FAILED [dpkg-buildpackage died]
> ────────────────────────────────────────────────────────────────────────────────
> Purging /var/lib/schroot/mount/sid-powerpc-sbuild-4ff07886-8817-472b-9b96-4d6330f4c744/build/buildd-gdcm_2.0.16-1-powerpc-jXjh6k
> Not removing build depends: cloned chroot in use
> ────────────────────────────────────────────────────────────────────────────────
> Finished at 20100818-1513
> Build needed 00:21:43, 198788k disc space
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