[Debian-med-packaging] Preliminary package of the NCBI SRA SDK: help needed.

[Andreas Tille]

On Wed, Dec 22, 2010 at 12:21:23AM +0900, Charles Plessy wrote:
>   $ sra-stat SRR006565.sra 
>   2010-12-21 15:15:00 sra-stat int: schema not found while opening table within virtual database module  - failed to open SRATable 'SRR006565.sra'

I confirm that I can reproduce the problem
Strange.  This string is neither part of the sources nor in the binaries.
So 
 
> Here is a typical result obtained from the static binaries that are distributed
> by the NCBI (http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software):
> 
>   $ /home/karl/src/sratoolkit.2.0b5-centos_linux64/sra-stat SRR006565.sra 
>   SRR006565.sra||2145126:77224536:77224536|0:0|0:0|0:0
> 
> By the way, I acknowledge that the package is still very far from being
> uploadable to Debian (see debian/control).
> 
> -- 
> Charles Plessy
> Debian Med packaging team,
> http://www.debian.org/devel/debian-med
> Strasbourg, France
> 
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