[Debian-med-packaging] [SCM] The European Molecular Biology Open Software Suite. branch, master, updated. upstream/6.2.0-16-g086fd76
Charles Plessy
plessy at debian.org
Mon Feb 22 13:00:49 UTC 2010
The following commit has been merged in the master branch:
commit 086fd76ba314dea834163322d761f2789d8a5bed
Author: Charles Plessy <plessy at debian.org>
Date: Mon Feb 22 21:59:41 2010 +0900
Updated manpages to version 6.2.0.
diff --git a/debian/acd2docbook.pl b/debian/acd2docbook.pl
old mode 100644
new mode 100755
index d4d1ced..11f6ac9
--- a/debian/acd2docbook.pl
+++ b/debian/acd2docbook.pl
@@ -37,7 +37,7 @@ print <<"__XML__";
<!-- Template from docbook-xsl version 1.72.0.dfsg.1-1 -->
<!ENTITY dhemail "debian-med-packaging\@lists.alioth.debian.org">
- <!ENTITY dhusername "Debian-Med Packaging Team">
+ <!ENTITY dhusername "Debian Med Packaging Team">
<!ENTITY dhrelease "$embossversion">
<!ENTITY dhtitle "EMBOSS Manual for Debian">
<!ENTITY dhucpackage "$NAME">
diff --git a/debian/emboss.manpages b/debian/emboss.manpages
index 7c2cd97..398c0ce 100644
--- a/debian/emboss.manpages
+++ b/debian/emboss.manpages
@@ -1,226 +1,229 @@
-debian/manpages/splitsource.1e
-debian/manpages/cons.1e
-debian/manpages/seqretset.1e
-debian/manpages/edialign.1e
-debian/manpages/seqret.1e
-debian/manpages/palindrome.1e
-debian/manpages/fuzztran.1e
-debian/manpages/histogramtest.1e
-debian/manpages/pepwindowall.1e
-debian/manpages/cutseq.1e
-debian/manpages/acdpretty.1e
-debian/manpages/antigenic.1e
-debian/manpages/printsextract.1e
-debian/manpages/nospace.1e
-debian/manpages/demostringnew.1e
-debian/manpages/codcopy.1e
-debian/manpages/nthseqset.1e
-debian/manpages/getorf.1e
-debian/manpages/demotable.1e
-debian/manpages/aligncopy.1e
-debian/manpages/prosextract.1e
-debian/manpages/noreturn.1e
-debian/manpages/cusp.1e
-debian/manpages/fuzzpro.1e
-debian/manpages/patmatmotifs.1e
-debian/manpages/wordfinder.1e
-debian/manpages/corbatest.1e
+debian/manpages/dbiblast.1e
+debian/manpages/polydot.1e
+debian/manpages/trimest.1e
+debian/manpages/showfeat.1e
+debian/manpages/helixturnhelix.1e
+debian/manpages/dbigcg.1e
+debian/manpages/btwisted.1e
+debian/manpages/aligncopypair.1e
+debian/manpages/tranalign.1e
debian/manpages/jaspscan.1e
-debian/manpages/trimspace.1e
-debian/manpages/matcher.1e
-debian/manpages/whichdb.1e
-debian/manpages/findkm.1e
-debian/manpages/extractalign.1e
-debian/manpages/primers.1e
-debian/manpages/tmap.1e
-debian/manpages/checktrans.1e
-debian/manpages/embossdata.1e
+debian/manpages/chips.1e
+debian/manpages/codcopy.1e
+debian/manpages/wossname.1e
+debian/manpages/dotpath.1e
debian/manpages/restrict.1e
-debian/manpages/sirna.1e
+debian/manpages/octanol.1e
+debian/manpages/maskambigprot.1e
+debian/manpages/banana.1e
debian/manpages/pepwheel.1e
-debian/manpages/showfeat.1e
+debian/manpages/treetypedisplay.1e
+debian/manpages/edamclean.1e
+debian/manpages/prophecy.1e
+debian/manpages/redata.1e
+debian/manpages/sirna.1e
+debian/manpages/supermatcher.1e
+debian/manpages/distmat.1e
+debian/manpages/recoder.1e
+debian/manpages/hmoment.1e
debian/manpages/pepnet.1e
-debian/manpages/origunion.1e
-debian/manpages/stssearch.1e
-debian/manpages/cirdna.1e
-debian/manpages/prettyplot.1e
-debian/manpages/aaindexextract.1e
+debian/manpages/maskambignuc.1e
+debian/manpages/plotcon.1e
+debian/manpages/tcode.1e
+debian/manpages/textsearch.1e
+debian/manpages/mwcontam.1e
+debian/manpages/edialign.1e
+debian/manpages/finddb.1e
+debian/manpages/intconv.1e
+debian/manpages/extractfeat.1e
+debian/manpages/syco.1e
debian/manpages/pepwindow.1e
-debian/manpages/ajbad.1e
-debian/manpages/testplot.1e
debian/manpages/dbxreport.1e
-debian/manpages/density.1e
-debian/manpages/descseq.1e
-debian/manpages/splitter.1e
-debian/manpages/etandem.1e
+debian/manpages/prettyseq.1e
+debian/manpages/primers.1e
debian/manpages/twofeat.1e
-debian/manpages/pasteseq.1e
-debian/manpages/oddcomp.1e
-debian/manpages/showalign.1e
-debian/manpages/entret.1e
-debian/manpages/maskfeat.1e
-debian/manpages/garnier.1e
-debian/manpages/wordmatch.1e
-debian/manpages/stretcher.1e
-debian/manpages/water.1e
-debian/manpages/dbxgcg.1e
-debian/manpages/textsearch.1e
-debian/manpages/preg.1e
-debian/manpages/emma.1e
-debian/manpages/seqrettype.1e
-debian/manpages/sixpack.1e
-debian/manpages/plotcon.1e
-debian/manpages/sizeseq.1e
-debian/manpages/tfscan.1e
-debian/manpages/inforesidue.1e
-debian/manpages/backtranseq.1e
-debian/manpages/prophecy.1e
+debian/manpages/makenucseq.1e
+debian/manpages/shuffleseq.1e
+debian/manpages/msbar.1e
+debian/manpages/extractalign.1e
+debian/manpages/ensembltest.1e
+debian/manpages/needle.1e
+debian/manpages/est2genome.1e
+debian/manpages/showseq.1e
+debian/manpages/prima.1e
+debian/manpages/cutseq.1e
+debian/manpages/wordcount.1e
+debian/manpages/equicktandem.1e
+debian/manpages/dbifasta.1e
+debian/manpages/noreturn.1e
+debian/manpages/needleall.1e
+debian/manpages/nthseq.1e
+debian/manpages/newcoils.1e
+debian/manpages/seqinfo.1e
debian/manpages/mwfilter.1e
-debian/manpages/intconv.1e
-debian/manpages/iep.1e
-debian/manpages/chips.1e
-debian/manpages/skipredundant.1e
-debian/manpages/acdlog.1e
-debian/manpages/dbigcg.1e
-debian/manpages/backtranambig.1e
-debian/manpages/cpgplot.1e
-debian/manpages/wobble.1e
-debian/manpages/distmat.1e
-debian/manpages/dreg.1e
-debian/manpages/pepstats.1e
-debian/manpages/acdvalid.1e
-debian/manpages/showpep.1e
-debian/manpages/rebaseextract.1e
-debian/manpages/coderet.1e
+debian/manpages/chaos.1e
+debian/manpages/showdb.1e
+debian/manpages/digest.1e
debian/manpages/dbxstat.1e
-debian/manpages/plotorf.1e
-debian/manpages/seqretallfeat.1e
-debian/manpages/seqretsplit.1e
-debian/manpages/prima.1e
-debian/manpages/treetypedisplay.1e
-debian/manpages/profit.1e
-debian/manpages/showseq.1e
-debian/manpages/degapseq.1e
+debian/manpages/merger.1e
+debian/manpages/acdpretty.1e
+debian/manpages/infobase.1e
+debian/manpages/tfextract.1e
+debian/manpages/splitter.1e
+debian/manpages/cirdna.1e
+debian/manpages/biosed.1e
+debian/manpages/rebaseextract.1e
+debian/manpages/showpep.1e
debian/manpages/dbxfasta.1e
+debian/manpages/einverted.1e
+debian/manpages/epestfind.1e
+debian/manpages/nospace.1e
+debian/manpages/garnier.1e
+debian/manpages/restover.1e
+debian/manpages/getorf.1e
+debian/manpages/prettyplot.1e
+debian/manpages/acdc.1e
+debian/manpages/degapseq.1e
debian/manpages/freak.1e
-debian/manpages/eprimer3.1e
-debian/manpages/patmattest.1e
+debian/manpages/prophet.1e
+debian/manpages/diffseq.1e
+debian/manpages/inforesidue.1e
+debian/manpages/acdtable.1e
+debian/manpages/skipseq.1e
debian/manpages/patmatdb.1e
-debian/manpages/infobase.1e
-debian/manpages/merger.1e
-debian/manpages/wordcount.1e
+debian/manpages/nthseqset.1e
+debian/manpages/entrails.1e
+debian/manpages/stretcher.1e
+debian/manpages/aligncopy.1e
+debian/manpages/descseq.1e
+debian/manpages/dreg.1e
+debian/manpages/codcmp.1e
+debian/manpages/seqretset.1e
+debian/manpages/pepcoil.1e
+debian/manpages/lindna.1e
+debian/manpages/backtranambig.1e
+debian/manpages/acdlog.1e
+debian/manpages/antigenic.1e
+debian/manpages/showorf.1e
+debian/manpages/infoalign.1e
+debian/manpages/seqretsingle.1e
+debian/manpages/splitsource.1e
+debian/manpages/pepwindowall.1e
+debian/manpages/newseq.1e
+debian/manpages/makeprotseq.1e
+debian/manpages/transeq.1e
+debian/manpages/seealso.1e
+debian/manpages/seqretallfeat.1e
+debian/manpages/tfscan.1e
+debian/manpages/pepstats.1e
+debian/manpages/sqltest.1e
+debian/manpages/charge.1e
+debian/manpages/showdball.1e
+debian/manpages/wordfinder.1e
+debian/manpages/skipredundant.1e
+debian/manpages/psiphi.1e
+debian/manpages/backtranseq.1e
+debian/manpages/seqretall.1e
+debian/manpages/iep.1e
+debian/manpages/newcpgreport.1e
+debian/manpages/maskseq.1e
+debian/manpages/embossversion.1e
+debian/manpages/entret.1e
+debian/manpages/marscan.1e
debian/manpages/listor.1e
-debian/manpages/notseq.1e
-debian/manpages/demosequence.1e
-debian/manpages/infoseq.1e
-debian/manpages/sigcleave.1e
+debian/manpages/seqret.1e
+debian/manpages/featreport.1e
+debian/manpages/dbxgcg.1e
+debian/manpages/checktrans.1e
+debian/manpages/origunion.1e
+debian/manpages/patmattest.1e
+debian/manpages/eprimer3.1e
+debian/manpages/prosextract.1e
+debian/manpages/origsplitter.1e
+debian/manpages/trimspace.1e
+debian/manpages/geecee.1e
+debian/manpages/printsextract.1e
+debian/manpages/coderet.1e
+debian/manpages/sizeseq.1e
+debian/manpages/maskfeat.1e
debian/manpages/nohtml.1e
-debian/manpages/seqretsingle.1e
-debian/manpages/prophet.1e
-debian/manpages/pepcoil.1e
+debian/manpages/cons.1e
+debian/manpages/idtell.1e
+debian/manpages/embossdata.1e
+debian/manpages/etandem.1e
+debian/manpages/water.1e
+debian/manpages/oddcomp.1e
+debian/manpages/wobble.1e
+debian/manpages/isochore.1e
+debian/manpages/cai.1e
debian/manpages/cpgreport.1e
-debian/manpages/syco.1e
-debian/manpages/maskambignuc.1e
-debian/manpages/btwisted.1e
-debian/manpages/silent.1e
-debian/manpages/mwcontam.1e
-debian/manpages/diffseq.1e
+debian/manpages/wordmatch.1e
debian/manpages/pepinfo.1e
-debian/manpages/redata.1e
-debian/manpages/maskambigprot.1e
-debian/manpages/primersearch.1e
-debian/manpages/infoalign.1e
-debian/manpages/emowse.1e
-debian/manpages/needle.1e
-debian/manpages/dbxflat.1e
-debian/manpages/compseq.1e
-debian/manpages/acdtrace.1e
-debian/manpages/megamerger.1e
-debian/manpages/msbar.1e
-debian/manpages/newcpgseek.1e
-debian/manpages/ajfeatest.1e
-debian/manpages/epestfind.1e
-debian/manpages/demofeatures.1e
-debian/manpages/dottup.1e
-debian/manpages/newcoils.1e
-debian/manpages/tfextract.1e
-debian/manpages/dbiflat.1e
-debian/manpages/einverted.1e
-debian/manpages/demoreport.1e
-debian/manpages/dbifasta.1e
-debian/manpages/dan.1e
+debian/manpages/findkm.1e
+debian/manpages/ajtest.1e
+debian/manpages/tfm.1e
+debian/manpages/tmap.1e
debian/manpages/union.1e
-debian/manpages/tranalign.1e
+debian/manpages/entrailsbook.1e
+debian/manpages/histogramtest.1e
+debian/manpages/patmatmotifs.1e
+debian/manpages/acdtrace.1e
+debian/manpages/silent.1e
+debian/manpages/ajbad.1e
+debian/manpages/whichdb.1e
debian/manpages/seqmatchall.1e
-debian/manpages/origsplitter.1e
-debian/manpages/makeprotseq.1e
+debian/manpages/abiview.1e
+debian/manpages/seqretsetall.1e
+debian/manpages/primersearch.1e
+debian/manpages/cpgplot.1e
+debian/manpages/megamerger.1e
debian/manpages/trimseq.1e
-debian/manpages/demoalign.1e
-debian/manpages/dotmatcher.1e
-debian/manpages/octanol.1e
-debian/manpages/showorf.1e
-debian/manpages/cutgextract.1e
+debian/manpages/matcher.1e
+debian/manpages/fuzznuc.1e
+debian/manpages/cusp.1e
debian/manpages/complex.1e
-debian/manpages/trimest.1e
-debian/manpages/tfm.1e
-debian/manpages/dbiblast.1e
-debian/manpages/revseq.1e
-debian/manpages/makenucseq.1e
-debian/manpages/biosed.1e
-debian/manpages/yank.1e
-debian/manpages/extractseq.1e
-debian/manpages/abiview.1e
-debian/manpages/est2genome.1e
-debian/manpages/giep.1e
-debian/manpages/acdc.1e
-debian/manpages/polydot.1e
-debian/manpages/transeq.1e
-debian/manpages/featreport.1e
+debian/manpages/dbiflat.1e
+debian/manpages/acdvalid.1e
+debian/manpages/plotorf.1e
+debian/manpages/testplot.1e
+debian/manpages/compseq.1e
+debian/manpages/entrailshtml.1e
+debian/manpages/corbatest.1e
+debian/manpages/showalign.1e
+debian/manpages/newcpgseek.1e
+debian/manpages/dbxflat.1e
debian/manpages/vectorstrip.1e
-debian/manpages/pscan.1e
-debian/manpages/psiphi.1e
-debian/manpages/embossversion.1e
-debian/manpages/maskseq.1e
-debian/manpages/prettyseq.1e
-debian/manpages/newseq.1e
-debian/manpages/banana.1e
-debian/manpages/entrails.1e
-debian/manpages/recoder.1e
+debian/manpages/dotmatcher.1e
+debian/manpages/notab.1e
+debian/manpages/cutgextract.1e
+debian/manpages/fuzzpro.1e
+debian/manpages/fuzztran.1e
+debian/manpages/dan.1e
+debian/manpages/emowse.1e
+debian/manpages/profit.1e
debian/manpages/consambig.1e
-debian/manpages/aligncopypair.1e
-debian/manpages/wossname.1e
-debian/manpages/featcopy.1e
-debian/manpages/chaos.1e
-debian/manpages/acdtable.1e
-debian/manpages/charge.1e
-debian/manpages/extractfeat.1e
-debian/manpages/hmoment.1e
+debian/manpages/dottup.1e
+debian/manpages/aaindexextract.1e
+debian/manpages/yank.1e
+debian/manpages/acdrelations.1e
+debian/manpages/ajfeatest.1e
+debian/manpages/emma.1e
+debian/manpages/notseq.1e
debian/manpages/remap.1e
-debian/manpages/isochore.1e
-debian/manpages/digest.1e
-debian/manpages/equicktandem.1e
-debian/manpages/lindna.1e
-debian/manpages/helixturnhelix.1e
-debian/manpages/codcmp.1e
-debian/manpages/geecee.1e
-debian/manpages/seqinfo.1e
-debian/manpages/showdb.1e
-debian/manpages/ajtest.1e
-debian/manpages/seqretall.1e
-debian/manpages/demolist.1e
+debian/manpages/sixpack.1e
+debian/manpages/seqxrefall.1e
+debian/manpages/revseq.1e
+debian/manpages/seqretsplit.1e
+debian/manpages/palindrome.1e
debian/manpages/jaspextract.1e
-debian/manpages/tcode.1e
-debian/manpages/seealso.1e
-debian/manpages/shuffleseq.1e
-debian/manpages/supermatcher.1e
-debian/manpages/dotpath.1e
-debian/manpages/marscan.1e
-debian/manpages/fuzznuc.1e
-debian/manpages/skipseq.1e
-debian/manpages/seqretsetall.1e
-debian/manpages/demostring.1e
-debian/manpages/notab.1e
-debian/manpages/newcpgreport.1e
-debian/manpages/cai.1e
-debian/manpages/restover.1e
-debian/manpages/nthseq.1e
+debian/manpages/extractseq.1e
+debian/manpages/stssearch.1e
+debian/manpages/featcopy.1e
+debian/manpages/infoseq.1e
+debian/manpages/pasteseq.1e
+debian/manpages/seqrettype.1e
+debian/manpages/density.1e
+debian/manpages/entrailswiki.1e
+debian/manpages/sigcleave.1e
+debian/manpages/preg.1e
+debian/manpages/pscan.1e
diff --git a/debian/manpages/aaindexextract.1e b/debian/manpages/aaindexextract.1e
index 289fe22..fbd130b 100644
--- a/debian/manpages/aaindexextract.1e
+++ b/debian/manpages/aaindexextract.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: AAINDEXEXTRACT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "AAINDEXEXTRACT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "AAINDEXEXTRACT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -45,7 +45,7 @@ aaindexextract is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/abiview.1e b/debian/manpages/abiview.1e
index bb3a81f..58a624e 100644
--- a/debian/manpages/abiview.1e
+++ b/debian/manpages/abiview.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ABIVIEW
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ABIVIEW" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ABIVIEW" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -88,7 +88,7 @@ abiview is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/acdc.1e b/debian/manpages/acdc.1e
index 109afc0..e248a6c 100644
--- a/debian/manpages/acdc.1e
+++ b/debian/manpages/acdc.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ACDC
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ACDC" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ACDC" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -40,7 +40,7 @@ acdc is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/acdlog.1e b/debian/manpages/acdlog.1e
index 9dddd86..58a4ce9 100644
--- a/debian/manpages/acdlog.1e
+++ b/debian/manpages/acdlog.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ACDLOG
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ACDLOG" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ACDLOG" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -40,7 +40,7 @@ acdlog is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/acdpretty.1e b/debian/manpages/acdpretty.1e
index bd68e00..27e95a7 100644
--- a/debian/manpages/acdpretty.1e
+++ b/debian/manpages/acdpretty.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ACDPRETTY
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ACDPRETTY" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ACDPRETTY" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -40,7 +40,7 @@ acdpretty is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/acdrelations.1e b/debian/manpages/acdrelations.1e
new file mode 100644
index 0000000..cb5cdd7
--- /dev/null
+++ b/debian/manpages/acdrelations.1e
@@ -0,0 +1,75 @@
+'\" t
+.\" Title: ACDRELATIONS
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "ACDRELATIONS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+acdrelations \- Add relations: attribute to ACD files
+.SH "SYNOPSIS"
+.HP \w'\fBacdrelations\fR\ 'u
+\fBacdrelations\fR \fB\-indir\ \fR\fB\fIdirlist\fR\fR \fB\-infileedam\ \fR\fB\fIdatafile\fR\fR \fB\-infiletype\ \fR\fB\fIinfile\fR\fR \fB\-outdir\ \fR\fB\fIoutdir\fR\fR
+.HP \w'\fBacdrelations\fR\ 'u
+\fBacdrelations\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBacdrelations\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Acd" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.PP
+\fB\-indir\fR \fIdirlist\fR
+.RS 4
+Default value: acdin
+.RE
+.PP
+\fB\-infileedam\fR \fIdatafile\fR
+.RS 4
+Default value: edamtoacd\&.dat
+.RE
+.PP
+\fB\-infiletype\fR \fIinfile\fR
+.RS 4
+Default value: /homes/jison/emboss/emboss/emboss/acd/knowntypes\&.standard
+.RE
+.SS "Required section"
+.SS "Advanced section"
+.SS "Output section"
+.PP
+\fB\-outdir\fR \fIoutdir\fR
+.RS 4
+Default value: acdout
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+acdrelations is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/acdtable.1e b/debian/manpages/acdtable.1e
index 7097965..382799f 100644
--- a/debian/manpages/acdtable.1e
+++ b/debian/manpages/acdtable.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ACDTABLE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ACDTABLE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ACDTABLE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -40,7 +40,7 @@ acdtable is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/acdtrace.1e b/debian/manpages/acdtrace.1e
index ce6f1dd..5e30155 100644
--- a/debian/manpages/acdtrace.1e
+++ b/debian/manpages/acdtrace.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ACDTRACE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ACDTRACE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ACDTRACE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -45,7 +45,7 @@ acdtrace is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/acdvalid.1e b/debian/manpages/acdvalid.1e
index 18aa9ae..035abf9 100644
--- a/debian/manpages/acdvalid.1e
+++ b/debian/manpages/acdvalid.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ACDVALID
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ACDVALID" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ACDVALID" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -40,7 +40,7 @@ acdvalid is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/ajbad.1e b/debian/manpages/ajbad.1e
index feb9462..6c78cf3 100644
--- a/debian/manpages/ajbad.1e
+++ b/debian/manpages/ajbad.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: AJBAD
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "AJBAD" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "AJBAD" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -88,7 +88,7 @@ ajbad is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/ajfeatest.1e b/debian/manpages/ajfeatest.1e
index 969d8fa..399d271 100644
--- a/debian/manpages/ajfeatest.1e
+++ b/debian/manpages/ajfeatest.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: AJFEATEST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "AJFEATEST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "AJFEATEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ ajfeatest is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/ajtest.1e b/debian/manpages/ajtest.1e
index b62b95f..c95951a 100644
--- a/debian/manpages/ajtest.1e
+++ b/debian/manpages/ajtest.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: AJTEST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "AJTEST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "AJTEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ ajtest is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/aligncopy.1e b/debian/manpages/aligncopy.1e
index bda7f11..e83097e 100644
--- a/debian/manpages/aligncopy.1e
+++ b/debian/manpages/aligncopy.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ALIGNCOPY
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ALIGNCOPY" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ALIGNCOPY" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ aligncopy is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/aligncopypair.1e b/debian/manpages/aligncopypair.1e
index 966b93e..b233ac1 100644
--- a/debian/manpages/aligncopypair.1e
+++ b/debian/manpages/aligncopypair.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ALIGNCOPYPAIR
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ALIGNCOPYPAIR" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ALIGNCOPYPAIR" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ aligncopypair is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/antigenic.1e b/debian/manpages/antigenic.1e
index 19010be..9b22bea 100644
--- a/debian/manpages/antigenic.1e
+++ b/debian/manpages/antigenic.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ANTIGENIC
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ANTIGENIC" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ANTIGENIC" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ antigenic is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/backtranambig.1e b/debian/manpages/backtranambig.1e
index e10d1fd..a947085 100644
--- a/debian/manpages/backtranambig.1e
+++ b/debian/manpages/backtranambig.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: BACKTRANAMBIG
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "BACKTRANAMBIG" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "BACKTRANAMBIG" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ backtranambig is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/backtranseq.1e b/debian/manpages/backtranseq.1e
index 359fbfd..ffcf8a9 100644
--- a/debian/manpages/backtranseq.1e
+++ b/debian/manpages/backtranseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: BACKTRANSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "BACKTRANSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "BACKTRANSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ backtranseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/banana.1e b/debian/manpages/banana.1e
index 02cdf45..fc7cb8f 100644
--- a/debian/manpages/banana.1e
+++ b/debian/manpages/banana.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: BANANA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "BANANA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "BANANA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -65,7 +65,7 @@ banana is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/biosed.1e b/debian/manpages/biosed.1e
index 2dee2cc..966b2a1 100644
--- a/debian/manpages/biosed.1e
+++ b/debian/manpages/biosed.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: BIOSED
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "BIOSED" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "BIOSED" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -22,7 +22,7 @@
biosed \- Replace or delete sequence sections
.SH "SYNOPSIS"
.HP \w'\fBbiosed\fR\ 'u
-\fBbiosed\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR \fB\-target\ \fR\fB\fIstring\fR\fR \fB\-delete\ \fR\fB\fItoggle\fR\fR \fB\-replace\ \fR\fB\fIstring\fR\fR [\fB\-position\ \fR\fB\fIinteger\fR\fR] \fB\-outseq\ \fR\fB\fIseqout\fR\fR
+\fBbiosed\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR \fB\-targetregion\ \fR\fB\fIstring\fR\fR \fB\-delete\ \fR\fB\fItoggle\fR\fR \fB\-replace\ \fR\fB\fIstring\fR\fR [\fB\-position\ \fR\fB\fIinteger\fR\fR] \fB\-outseq\ \fR\fB\fIseqout\fR\fR
.HP \w'\fBbiosed\fR\ 'u
\fBbiosed\fR \fB\-help\fR
.SH "DESCRIPTION"
@@ -37,7 +37,7 @@ is a command line program from EMBOSS (\(lqthe European Molecular Biology Open S
.RE
.SS "Required section"
.PP
-\fB\-target\fR \fIstring\fR
+\fB\-targetregion\fR \fIstring\fR
.RS 4
Default value: N
.RE
@@ -71,7 +71,7 @@ biosed is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/btwisted.1e b/debian/manpages/btwisted.1e
index bdf01e2..8948118 100644
--- a/debian/manpages/btwisted.1e
+++ b/debian/manpages/btwisted.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: BTWISTED
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "BTWISTED" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "BTWISTED" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ btwisted is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cai.1e b/debian/manpages/cai.1e
index d084438..244905e 100644
--- a/debian/manpages/cai.1e
+++ b/debian/manpages/cai.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CAI
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CAI" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CAI" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ cai is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/chaos.1e b/debian/manpages/chaos.1e
index 4758ecc..2fc89a7 100644
--- a/debian/manpages/chaos.1e
+++ b/debian/manpages/chaos.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CHAOS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CHAOS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CHAOS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ chaos is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/charge.1e b/debian/manpages/charge.1e
index 0e3d1ab..8ef2b14 100644
--- a/debian/manpages/charge.1e
+++ b/debian/manpages/charge.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CHARGE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CHARGE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CHARGE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ charge is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/checktrans.1e b/debian/manpages/checktrans.1e
index 260eea4..d2b730e 100644
--- a/debian/manpages/checktrans.1e
+++ b/debian/manpages/checktrans.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CHECKTRANS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CHECKTRANS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CHECKTRANS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -72,7 +72,7 @@ checktrans is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/chips.1e b/debian/manpages/chips.1e
index 77844d5..5eb8314 100644
--- a/debian/manpages/chips.1e
+++ b/debian/manpages/chips.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CHIPS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CHIPS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CHIPS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ chips is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cirdna.1e b/debian/manpages/cirdna.1e
index ae1b754..f937b3a 100644
--- a/debian/manpages/cirdna.1e
+++ b/debian/manpages/cirdna.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CIRDNA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CIRDNA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CIRDNA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -147,7 +147,7 @@ cirdna is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/codcmp.1e b/debian/manpages/codcmp.1e
index 4d2b790..5e0d46a 100644
--- a/debian/manpages/codcmp.1e
+++ b/debian/manpages/codcmp.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CODCMP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CODCMP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CODCMP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ codcmp is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/codcopy.1e b/debian/manpages/codcopy.1e
index 0ebeac7..b86a83a 100644
--- a/debian/manpages/codcopy.1e
+++ b/debian/manpages/codcopy.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CODCOPY
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CODCOPY" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CODCOPY" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -51,7 +51,7 @@ codcopy is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/coderet.1e b/debian/manpages/coderet.1e
index cc6fb54..09a6e94 100644
--- a/debian/manpages/coderet.1e
+++ b/debian/manpages/coderet.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CODERET
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CODERET" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CODERET" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ coderet is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/complex.1e b/debian/manpages/complex.1e
index 5d6c89d..d9f7956 100644
--- a/debian/manpages/complex.1e
+++ b/debian/manpages/complex.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: COMPLEX
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "COMPLEX" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "COMPLEX" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -100,7 +100,7 @@ complex is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/compseq.1e b/debian/manpages/compseq.1e
index 3d64ab9..bf1a0ff 100644
--- a/debian/manpages/compseq.1e
+++ b/debian/manpages/compseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: COMPSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "COMPSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "COMPSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -88,7 +88,7 @@ compseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cons.1e b/debian/manpages/cons.1e
index a29a4df..a99aed4 100644
--- a/debian/manpages/cons.1e
+++ b/debian/manpages/cons.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CONS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CONS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CONS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -76,7 +76,7 @@ cons is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/consambig.1e b/debian/manpages/consambig.1e
index f9de3cf..0c87965 100644
--- a/debian/manpages/consambig.1e
+++ b/debian/manpages/consambig.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CONSAMBIG
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CONSAMBIG" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CONSAMBIG" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ consambig is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/corbatest.1e b/debian/manpages/corbatest.1e
index 7e41fef..78497fa 100644
--- a/debian/manpages/corbatest.1e
+++ b/debian/manpages/corbatest.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CORBATEST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CORBATEST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CORBATEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -51,7 +51,7 @@ corbatest is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cpgplot.1e b/debian/manpages/cpgplot.1e
index 401db66..018054a 100644
--- a/debian/manpages/cpgplot.1e
+++ b/debian/manpages/cpgplot.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CPGPLOT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CPGPLOT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CPGPLOT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -39,7 +39,7 @@ is a command line program from EMBOSS (\(lqthe European Molecular Biology Open S
.PP
\fB\-window\fR \fIinteger\fR
.RS 4
-The percentage CG content and the Observed frequency of CG is calculated within a window whose size is set by this parameter\&. The window is moved down the sequence and these statistics are calculated at each postition that the window is moved to\&. Default value: 100
+The percentage CG content and the Observed frequency of CG is calculated within a window whose size is set by this parameter\&. The window is moved down the sequence and these statistics are calculated at each position that the window is moved to\&. Default value: 100
.RE
.PP
\fB\-minlen\fR \fIinteger\fR
@@ -101,7 +101,7 @@ cpgplot is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cpgreport.1e b/debian/manpages/cpgreport.1e
index af8db8b..36aba71 100644
--- a/debian/manpages/cpgreport.1e
+++ b/debian/manpages/cpgreport.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CPGREPORT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CPGREPORT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CPGREPORT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ cpgreport is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cusp.1e b/debian/manpages/cusp.1e
index 5eefb45..423c4db 100644
--- a/debian/manpages/cusp.1e
+++ b/debian/manpages/cusp.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CUSP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CUSP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CUSP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ cusp is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cutgextract.1e b/debian/manpages/cutgextract.1e
index 0b75f3b..80fe25b 100644
--- a/debian/manpages/cutgextract.1e
+++ b/debian/manpages/cutgextract.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CUTGEXTRACT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CUTGEXTRACT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CUTGEXTRACT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -19,7 +19,7 @@
.\" * MAIN CONTENT STARTS HERE *
.\" -----------------------------------------------------------------
.SH "NAME"
-cutgextract \- Extract codon usage tables from from CUTG database
+cutgextract \- Extract codon usage tables from CUTG database
.SH "SYNOPSIS"
.HP \w'\fBcutgextract\fR\ 'u
\fBcutgextract\fR \fB\-directory\ \fR\fB\fIdirlist\fR\fR \fB\-release\ \fR\fB\fIstring\fR\fR \fB\-wildspec\ \fR\fB\fIstring\fR\fR \fB\-species\ \fR\fB\fIstring\fR\fR \fB\-allrecords\ \fR\fB\fIboolean\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR \fB\-filename\ \fR\fB\fIstring\fR\fR
@@ -76,7 +76,7 @@ cutgextract is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/cutseq.1e b/debian/manpages/cutseq.1e
index 4394e55..fd18a4a 100644
--- a/debian/manpages/cutseq.1e
+++ b/debian/manpages/cutseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: CUTSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "CUTSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "CUTSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ cutseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dan.1e b/debian/manpages/dan.1e
index 646b6fc..f8aa8c3 100644
--- a/debian/manpages/dan.1e
+++ b/debian/manpages/dan.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DAN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DAN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DAN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -125,7 +125,7 @@ dan is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbiblast.1e b/debian/manpages/dbiblast.1e
index 94ae559..2e88371 100644
--- a/debian/manpages/dbiblast.1e
+++ b/debian/manpages/dbiblast.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBIBLAST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBIBLAST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBIBLAST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -119,7 +119,7 @@ dbiblast is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbifasta.1e b/debian/manpages/dbifasta.1e
index 18f60ed..a85c5a9 100644
--- a/debian/manpages/dbifasta.1e
+++ b/debian/manpages/dbifasta.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBIFASTA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBIFASTA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBIFASTA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -110,7 +110,7 @@ dbifasta is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbiflat.1e b/debian/manpages/dbiflat.1e
index 3fd0bcd..5b8a002 100644
--- a/debian/manpages/dbiflat.1e
+++ b/debian/manpages/dbiflat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBIFLAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBIFLAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBIFLAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -110,7 +110,7 @@ dbiflat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbigcg.1e b/debian/manpages/dbigcg.1e
index 2e7a950..f82877e 100644
--- a/debian/manpages/dbigcg.1e
+++ b/debian/manpages/dbigcg.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBIGCG
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBIGCG" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBIGCG" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -110,7 +110,7 @@ dbigcg is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbxfasta.1e b/debian/manpages/dbxfasta.1e
index 1b0d1cb..ac4070f 100644
--- a/debian/manpages/dbxfasta.1e
+++ b/debian/manpages/dbxfasta.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBXFASTA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBXFASTA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBXFASTA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -95,7 +95,7 @@ dbxfasta is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbxflat.1e b/debian/manpages/dbxflat.1e
index e50e2fd..2d077d5 100644
--- a/debian/manpages/dbxflat.1e
+++ b/debian/manpages/dbxflat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBXFLAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBXFLAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBXFLAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -95,7 +95,7 @@ dbxflat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbxgcg.1e b/debian/manpages/dbxgcg.1e
index ea76106..ecc519d 100644
--- a/debian/manpages/dbxgcg.1e
+++ b/debian/manpages/dbxgcg.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBXGCG
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBXGCG" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBXGCG" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -95,7 +95,7 @@ dbxgcg is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbxreport.1e b/debian/manpages/dbxreport.1e
index 169e3dc..071bea9 100644
--- a/debian/manpages/dbxreport.1e
+++ b/debian/manpages/dbxreport.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBXREPORT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBXREPORT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBXREPORT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ dbxreport is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dbxstat.1e b/debian/manpages/dbxstat.1e
index 1402cbe..09c6559 100644
--- a/debian/manpages/dbxstat.1e
+++ b/debian/manpages/dbxstat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DBXSTAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DBXSTAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DBXSTAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -71,7 +71,7 @@ dbxstat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/degapseq.1e b/debian/manpages/degapseq.1e
index 2563d0d..446d126 100644
--- a/debian/manpages/degapseq.1e
+++ b/debian/manpages/degapseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DEGAPSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DEGAPSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DEGAPSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ degapseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/demoalign.1e b/debian/manpages/demoalign.1e
deleted file mode 100644
index 0d712ae..0000000
--- a/debian/manpages/demoalign.1e
+++ /dev/null
@@ -1,76 +0,0 @@
-'\" t
-.\" Title: DEMOALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOALIGN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demoalign \- Reads a sequence set, writes an alignment file
-.SH "SYNOPSIS"
-.HP \w'\fBdemoalign\fR\ 'u
-\fBdemoalign\fR \fB\-sequence\ \fR\fB\fIseqset\fR\fR [\fB\-floatmatrix\ \fR\fB\fImatrixf\fR\fR] [\fB\-intmatrix\ \fR\fB\fImatrix\fR\fR] \fB\-dofloat\ \fR\fB\fIboolean\fR\fR \fB\-outfile\ \fR\fB\fIalign\fR\fR
-.HP \w'\fBdemoalign\fR\ 'u
-\fBdemoalign\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemoalign\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.PP
-\fB\-sequence\fR \fIseqset\fR
-.RS 4
-.RE
-.PP
-\fB\-floatmatrix\fR \fImatrixf\fR
-.RS 4
-This is the scoring matrix file used when comparing sequences\&. By default it is the file \'EBLOSUM62\' (for proteins) or the file \'EDNAFULL\' (for nucleic sequences)\&. These files are found in the \'data\' directory of the EMBOSS installation\&.
-.RE
-.PP
-\fB\-intmatrix\fR \fImatrix\fR
-.RS 4
-This is the scoring matrix file used when comparing sequences\&. By default it is the file \'EBLOSUM62\' (for proteins) or the file \'EDNAFULL\' (for nucleic sequences)\&. These files are found in the \'data\' directory of the EMBOSS installation\&.
-.RE
-.SS "Advanced section"
-.PP
-\fB\-dofloat\fR \fIboolean\fR
-.RS 4
-.RE
-.SS "Output section"
-.PP
-\fB\-outfile\fR \fIalign\fR
-.RS 4
-.RE
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demoalign is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/demofeatures.1e b/debian/manpages/demofeatures.1e
deleted file mode 100644
index 4ee55fd..0000000
--- a/debian/manpages/demofeatures.1e
+++ /dev/null
@@ -1,68 +0,0 @@
-'\" t
-.\" Title: DEMOFEATURES
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOFEATURES" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demofeatures \- Demonstration of the feature functions
-.SH "SYNOPSIS"
-.HP \w'\fBdemofeatures\fR\ 'u
-\fBdemofeatures\fR \fB\-typesort\ \fR\fB\fIboolean\fR\fR \fB\-startsort\ \fR\fB\fIboolean\fR\fR \fB\-outfeat\ \fR\fB\fIfeatout\fR\fR
-.HP \w'\fBdemofeatures\fR\ 'u
-\fBdemofeatures\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemofeatures\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Advanced section"
-.PP
-\fB\-typesort\fR \fIboolean\fR
-.RS 4
-Sort output features by their type Default value: N
-.RE
-.PP
-\fB\-startsort\fR \fIboolean\fR
-.RS 4
-Sort output features by their start position Default value: N
-.RE
-.SS "Output section"
-.PP
-\fB\-outfeat\fR \fIfeatout\fR
-.RS 4
-File for output of normal tab delimited gff\'s Default value: gff:demofeatures\&.gff
-.RE
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demofeatures is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/demolist.1e b/debian/manpages/demolist.1e
deleted file mode 100644
index 80e3588..0000000
--- a/debian/manpages/demolist.1e
+++ /dev/null
@@ -1,57 +0,0 @@
-'\" t
-.\" Title: DEMOLIST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOLIST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demolist \- Demonstration of the list functions
-.SH "SYNOPSIS"
-.HP \w'\fBdemolist\fR\ 'u
-\fBdemolist\fR \fB\-infile\ \fR\fB\fIinfile\fR\fR
-.HP \w'\fBdemolist\fR\ 'u
-\fBdemolist\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemolist\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.PP
-\fB\-infile\fR \fIinfile\fR
-.RS 4
-File containing normal tab delimited gff\'s
-.RE
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demolist is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/demoreport.1e b/debian/manpages/demoreport.1e
deleted file mode 100644
index b74716a..0000000
--- a/debian/manpages/demoreport.1e
+++ /dev/null
@@ -1,61 +0,0 @@
-'\" t
-.\" Title: DEMOREPORT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOREPORT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demoreport \- Reads a sequence and feature table, writes a report
-.SH "SYNOPSIS"
-.HP \w'\fBdemoreport\fR\ 'u
-\fBdemoreport\fR \fB\-sequence\ \fR\fB\fIsequence\fR\fR \fB\-outfile\ \fR\fB\fIreport\fR\fR
-.HP \w'\fBdemoreport\fR\ 'u
-\fBdemoreport\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemoreport\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.PP
-\fB\-sequence\fR \fIsequence\fR
-.RS 4
-.RE
-.SS "Output section"
-.PP
-\fB\-outfile\fR \fIreport\fR
-.RS 4
-.RE
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demoreport is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/demosequence.1e b/debian/manpages/demosequence.1e
deleted file mode 100644
index 25b2664..0000000
--- a/debian/manpages/demosequence.1e
+++ /dev/null
@@ -1,52 +0,0 @@
-'\" t
-.\" Title: DEMOSEQUENCE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOSEQUENCE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demosequence \- Demonstration of the sequence functions
-.SH "SYNOPSIS"
-.HP \w'\fBdemosequence\fR\ 'u
-\fBdemosequence\fR
-.HP \w'\fBdemosequence\fR\ 'u
-\fBdemosequence\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemosequence\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demosequence is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/demostring.1e b/debian/manpages/demostring.1e
deleted file mode 100644
index f6b482c..0000000
--- a/debian/manpages/demostring.1e
+++ /dev/null
@@ -1,56 +0,0 @@
-'\" t
-.\" Title: DEMOSTRING
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOSTRING" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demostring \- Demonstration of the string functions
-.SH "SYNOPSIS"
-.HP \w'\fBdemostring\fR\ 'u
-\fBdemostring\fR \fB\-instring\ \fR\fB\fIstring\fR\fR
-.HP \w'\fBdemostring\fR\ 'u
-\fBdemostring\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemostring\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.PP
-\fB\-instring\fR \fIstring\fR
-.RS 4
-.RE
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demostring is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/demostringnew.1e b/debian/manpages/demostringnew.1e
deleted file mode 100644
index 5b9ab4c..0000000
--- a/debian/manpages/demostringnew.1e
+++ /dev/null
@@ -1,52 +0,0 @@
-'\" t
-.\" Title: DEMOSTRINGNEW
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOSTRINGNEW" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demostringnew \- Illustrates use of the AJAX string library\&.
-.SH "SYNOPSIS"
-.HP \w'\fBdemostringnew\fR\ 'u
-\fBdemostringnew\fR
-.HP \w'\fBdemostringnew\fR\ 'u
-\fBdemostringnew\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemostringnew\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demostringnew is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/demotable.1e b/debian/manpages/demotable.1e
deleted file mode 100644
index de5dc1b..0000000
--- a/debian/manpages/demotable.1e
+++ /dev/null
@@ -1,57 +0,0 @@
-'\" t
-.\" Title: DEMOTABLE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "DEMOTABLE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-demotable \- Demonstration of the table functions
-.SH "SYNOPSIS"
-.HP \w'\fBdemotable\fR\ 'u
-\fBdemotable\fR \fB\-infile\ \fR\fB\fIinfile\fR\fR
-.HP \w'\fBdemotable\fR\ 'u
-\fBdemotable\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBdemotable\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.PP
-\fB\-infile\fR \fIinfile\fR
-.RS 4
-File containing normal tab delimited gff\'s
-.RE
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-demotable is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/density.1e b/debian/manpages/density.1e
index 2e5fb35..93c71c8 100644
--- a/debian/manpages/density.1e
+++ b/debian/manpages/density.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DENSITY
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DENSITY" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DENSITY" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -69,7 +69,7 @@ density is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/descseq.1e b/debian/manpages/descseq.1e
index 106d998..83868a0 100644
--- a/debian/manpages/descseq.1e
+++ b/debian/manpages/descseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DESCSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DESCSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DESCSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -65,7 +65,7 @@ descseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/diffseq.1e b/debian/manpages/diffseq.1e
index 6d1b0c0..b7ed05c 100644
--- a/debian/manpages/diffseq.1e
+++ b/debian/manpages/diffseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DIFFSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DIFFSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DIFFSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -76,7 +76,7 @@ diffseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/digest.1e b/debian/manpages/digest.1e
index 9db46c9..7cd490f 100644
--- a/debian/manpages/digest.1e
+++ b/debian/manpages/digest.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DIGEST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DIGEST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DIGEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -92,7 +92,7 @@ digest is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/distmat.1e b/debian/manpages/distmat.1e
index 778c8cd..b177a77 100644
--- a/debian/manpages/distmat.1e
+++ b/debian/manpages/distmat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DISTMAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DISTMAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DISTMAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -88,7 +88,7 @@ distmat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dotmatcher.1e b/debian/manpages/dotmatcher.1e
index 2d557fe..3734250 100644
--- a/debian/manpages/dotmatcher.1e
+++ b/debian/manpages/dotmatcher.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DOTMATCHER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DOTMATCHER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DOTMATCHER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -79,7 +79,7 @@ dotmatcher is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dotpath.1e b/debian/manpages/dotpath.1e
index 941f934..d2aab50 100644
--- a/debian/manpages/dotpath.1e
+++ b/debian/manpages/dotpath.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DOTPATH
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DOTPATH" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DOTPATH" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ dotpath is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dottup.1e b/debian/manpages/dottup.1e
index 752beb6..a30de57 100644
--- a/debian/manpages/dottup.1e
+++ b/debian/manpages/dottup.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DOTTUP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DOTTUP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DOTTUP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -74,7 +74,7 @@ dottup is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/dreg.1e b/debian/manpages/dreg.1e
index de8d518..1554cf3 100644
--- a/debian/manpages/dreg.1e
+++ b/debian/manpages/dreg.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: DREG
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "DREG" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "DREG" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ dreg is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/edamclean.1e b/debian/manpages/edamclean.1e
new file mode 100644
index 0000000..cae7b93
--- /dev/null
+++ b/debian/manpages/edamclean.1e
@@ -0,0 +1,75 @@
+'\" t
+.\" Title: EDAMCLEAN
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "EDAMCLEAN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+edamclean \- Validate and fix EDAM OBO ontology
+.SH "SYNOPSIS"
+.HP \w'\fBedamclean\fR\ 'u
+\fBedamclean\fR \fB\-edamin\ \fR\fB\fIinfile\fR\fR \fB\-mode\ \fR\fB\fIselection\fR\fR \fB\-edamout\ \fR\fB\fIoutfile\fR\fR \fB\-log\ \fR\fB\fIoutfile\fR\fR
+.HP \w'\fBedamclean\fR\ 'u
+\fBedamclean\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBedamclean\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.PP
+\fB\-edamin\fR \fIinfile\fR
+.RS 4
+Default value: /homes/jison/Ontologies/EDAM_beta1\&.obo
+.RE
+.SS "Required section"
+.PP
+\fB\-mode\fR \fIselection\fR
+.RS 4
+Default value: Report only
+.RE
+.SS "Advanced section"
+.SS "Output section"
+.PP
+\fB\-edamout\fR \fIoutfile\fR
+.RS 4
+Default value: EDAM_out\&.obo
+.RE
+.PP
+\fB\-log\fR \fIoutfile\fR
+.RS 4
+Default value: EDAM_out\&.log
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+edamclean is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/edialign.1e b/debian/manpages/edialign.1e
index 9fe681a..62536ff 100644
--- a/debian/manpages/edialign.1e
+++ b/debian/manpages/edialign.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EDIALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EDIALIGN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EDIALIGN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -115,7 +115,7 @@ edialign is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/einverted.1e b/debian/manpages/einverted.1e
index a53ba10..1f3dfdb 100644
--- a/debian/manpages/einverted.1e
+++ b/debian/manpages/einverted.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EINVERTED
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EINVERTED" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EINVERTED" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -82,7 +82,7 @@ einverted is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/embossdata.1e b/debian/manpages/embossdata.1e
index f1add6b..ddcbc12 100644
--- a/debian/manpages/embossdata.1e
+++ b/debian/manpages/embossdata.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EMBOSSDATA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EMBOSSDATA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EMBOSSDATA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ embossdata is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/embossversion.1e b/debian/manpages/embossversion.1e
index 7a319f5..e0b6a99 100644
--- a/debian/manpages/embossversion.1e
+++ b/debian/manpages/embossversion.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EMBOSSVERSION
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EMBOSSVERSION" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EMBOSSVERSION" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -51,7 +51,7 @@ embossversion is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/emma.1e b/debian/manpages/emma.1e
index 0605327..65c8088 100644
--- a/debian/manpages/emma.1e
+++ b/debian/manpages/emma.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EMMA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EMMA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EMMA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -22,7 +22,7 @@
emma \- Multiple sequence alignment (ClustalW wrapper)
.SH "SYNOPSIS"
.HP \w'\fBemma\fR\ 'u
-\fBemma\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR [\fB\-onlydend\ \fR\fB\fItoggle\fR\fR] \fB\-dend\ \fR\fB\fItoggle\fR\fR \fB\-dendfile\ \fR\fB\fIinfile\fR\fR \fB\-pwmatrix\ \fR\fB\fIlist\fR\fR \fB\-pwdnamatrix\ \fR\fB\fIlist\fR\fR \fB\-usermatrix\ \fR\fB\fIvariable\fR\fR \fB\-pairwisedatafile\ \fR\fB\fIinfile\fR\fR \fB\-matrix\ \fR\fB\fIlist\fR\fR \fB\-usermamatrix\ \fR\fB\fIvariable\fR\fR \fB\-dnamatrix\ \fR\fB\fIlist\fR\fR \fB\-umamatrix\ \fR\fB\fIvariable\fR\fR \fB\-mamatrixfile\ \fR\fB\fIinfile\fR\fR [\fB\-slow\ \fR\fB\fItoggle\fR\fR] \fB\-pwgapopen\ \fR\fB\fIfloat\fR\fR \fB\-pwgapextend\ \fR\fB\fIfloat\fR\fR \fB\-ktup\ \fR\fB\fIinteger\fR\fR \fB\-gapw\ \fR\fB\fIinteger\fR\fR \fB\-topdiags\ \fR\fB\fIinteger\fR\fR \fB\-window\ \fR\fB\fIinteger\fR\fR \fB\-nopercent\ \fR\fB\fIboolean\fR\fR [\fB\-gapopen\ \fR\fB\fIfloat\fR\fR] [\fB\-gapextend\ \fR\fB\fIfloat\fR\fR] [\fB\-endgaps\ \fR\fB\fIboolean\fR\fR] [\fB\-gapdist\ \fR\fB\fIinteger\fR\fR] \fB\-norgap\ \fR\fB\fIboolean\fR\fR \fB\-hgapres\ \fR\fB\fIstring\fR\fR \fB\-nohgap\ \fR\fB\fIboolean\fR\fR [\fB\-maxdiv\ \fR\fB\fIinteger\fR\fR] \fB\-outseq\ \fR\fB\fIseqoutset\fR\fR \fB\-dendoutfile\ \fR\fB\fIoutfile\fR\fR
+\fBemma\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR [\fB\-onlydend\ \fR\fB\fItoggle\fR\fR] \fB\-dend\ \fR\fB\fItoggle\fR\fR \fB\-dendfile\ \fR\fB\fIinfile\fR\fR [\fB\-slow\ \fR\fB\fItoggle\fR\fR] \fB\-pwmatrix\ \fR\fB\fIlist\fR\fR \fB\-pwdnamatrix\ \fR\fB\fIlist\fR\fR \fB\-usermatrix\ \fR\fB\fIvariable\fR\fR \fB\-pairwisedatafile\ \fR\fB\fIinfile\fR\fR \fB\-matrix\ \fR\fB\fIlist\fR\fR \fB\-usermamatrix\ \fR\fB\fIvariable\fR\fR \fB\-dnamatrix\ \fR\fB\fIlist\fR\fR \fB\-umamatrix\ \fR\fB\fIvariable\fR\fR \fB\-mamatrixfile\ \fR\fB\fIinfile\fR\fR \fB\-pwgapopen\ \fR\fB\fIfloat\fR\fR \fB\-pwgapextend\ \fR\fB\fIfloat\fR\fR \fB\-ktup\ \fR\fB\fIinteger\fR\fR \fB\-gapw\ \fR\fB\fIinteger\fR\fR \fB\-topdiags\ \fR\fB\fIinteger\fR\fR \fB\-window\ \fR\fB\fIinteger\fR\fR \fB\-nopercent\ \fR\fB\fIboolean\fR\fR [\fB\-gapopen\ \fR\fB\fIfloat\fR\fR] [\fB\-gapextend\ \fR\fB\fIfloat\fR\fR] [\fB\-endgaps\ \fR\fB\fIboolean\fR\fR] [\fB\-gapdist\ \fR\fB\fIinteger\fR\fR] \fB\-norgap\ \fR\fB\fIboolean\fR\fR \fB\-hgapres\ \fR\fB\fIstring\fR\fR \fB\-nohgap\ \fR\fB\fIboolean\fR\fR [\fB\-maxdiv\ \fR\fB\fIinteger\fR\fR] \fB\-outseq\ \fR\fB\fIseqoutset\fR\fR \fB\-dendoutfile\ \fR\fB\fIoutfile\fR\fR
.HP \w'\fBemma\fR\ 'u
\fBemma\fR \fB\-help\fR
.SH "DESCRIPTION"
@@ -49,7 +49,12 @@ Default value: N
\fB\-dendfile\fR \fIinfile\fR
.RS 4
.RE
-.SS "Protein align options"
+.PP
+\fB\-slow\fR \fItoggle\fR
+.RS 4
+A distance is calculated between every pair of sequences and these are used to construct the dendrogram which guides the final multiple alignment\&. The scores are calculated from separate pairwise alignments\&. These can be calculated using 2 methods: dynamic programming (slow but accurate) or by the method of Wilbur and Lipman (extremely fast but approximate)\&. The slow\-accurate method is fine for short sequences but will be VERY SLOW for many (e\&.g\&. >100) long (e\&.g\&. >1000 residue) sequences\&. Default value: Y
+.RE
+.SS "Pairwise align options"
.PP
\fB\-pwmatrix\fR \fIlist\fR
.RS 4
@@ -94,11 +99,6 @@ This gives a menu where a single matrix (not a series) can be selected\&. Defaul
.SS "Additional section"
.SS "Slow align options"
.PP
-\fB\-slow\fR \fItoggle\fR
-.RS 4
-A distance is calculated between every pair of sequences and these are used to construct the dendrogram which guides the final multiple alignment\&. The scores are calculated from separate pairwise alignments\&. These can be calculated using 2 methods: dynamic programming (slow but accurate) or by the method of Wilbur and Lipman (extremely fast but approximate)\&. The slow\-accurate method is fine for short sequences but will be VERY SLOW for many (e\&.g\&. >100) long (e\&.g\&. >1000 residue) sequences\&. Default value: Y
-.RE
-.PP
\fB\-pwgapopen\fR \fIfloat\fR
.RS 4
The penalty for opening a gap in the pairwise alignments\&. Default value: 10\&.0
@@ -194,7 +194,7 @@ emma is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/emowse.1e b/debian/manpages/emowse.1e
index ee5680e..ccb206a 100644
--- a/debian/manpages/emowse.1e
+++ b/debian/manpages/emowse.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EMOWSE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EMOWSE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EMOWSE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -95,7 +95,7 @@ emowse is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/ensembltest.1e b/debian/manpages/ensembltest.1e
new file mode 100644
index 0000000..3c3e2c2
--- /dev/null
+++ b/debian/manpages/ensembltest.1e
@@ -0,0 +1,85 @@
+'\" t
+.\" Title: ENSEMBLTEST
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "ENSEMBLTEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+ensembltest \- Demonstration of the Ensembl API to be\&.
+.SH "SYNOPSIS"
+.HP \w'\fBensembltest\fR\ 'u
+\fBensembltest\fR \fB\-large\ \fR\fB\fIboolean\fR\fR \fB\-maxnum\ \fR\fB\fIinteger\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR \fB\-outseq\ \fR\fB\fIseqoutall\fR\fR \fB\-exons\ \fR\fB\fIseqoutall\fR\fR \fB\-transcripts\ \fR\fB\fIseqoutall\fR\fR \fB\-translations\ \fR\fB\fIseqoutall\fR\fR
+.HP \w'\fBensembltest\fR\ 'u
+\fBensembltest\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBensembltest\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.SS "Required section"
+.SS "Advanced section"
+.PP
+\fB\-large\fR \fIboolean\fR
+.RS 4
+Set this to \'Y\' to download large test data sets\&. Default value: N
+.RE
+.PP
+\fB\-maxnum\fR \fIinteger\fR
+.RS 4
+Default value: 25
+.RE
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+.RE
+.PP
+\fB\-outseq\fR \fIseqoutall\fR
+.RS 4
+.RE
+.PP
+\fB\-exons\fR \fIseqoutall\fR
+.RS 4
+.RE
+.PP
+\fB\-transcripts\fR \fIseqoutall\fR
+.RS 4
+.RE
+.PP
+\fB\-translations\fR \fIseqoutall\fR
+.RS 4
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+ensembltest is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/entrails.1e b/debian/manpages/entrails.1e
index ffdd317..2f03400 100644
--- a/debian/manpages/entrails.1e
+++ b/debian/manpages/entrails.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ENTRAILS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ENTRAILS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ENTRAILS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -51,7 +51,7 @@ entrails is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/entrailsbook.1e b/debian/manpages/entrailsbook.1e
new file mode 100644
index 0000000..dc6b4ce
--- /dev/null
+++ b/debian/manpages/entrailsbook.1e
@@ -0,0 +1,62 @@
+'\" t
+.\" Title: ENTRAILSBOOK
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "ENTRAILSBOOK" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+entrailsbook \- Reports the internal structures in EMBOSS book format
+.SH "SYNOPSIS"
+.HP \w'\fBentrailsbook\fR\ 'u
+\fBentrailsbook\fR \fB\-tables\ \fR\fB\fIlist\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
+.HP \w'\fBentrailsbook\fR\ 'u
+\fBentrailsbook\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBentrailsbook\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Utils:Misc" command group(s)\&.
+.SH "OPTIONS"
+.SS "required section"
+.PP
+\fB\-tables\fR \fIlist\fR
+.RS 4
+Default value: all
+.RE
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+entrailsbook is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/entrailshtml.1e b/debian/manpages/entrailshtml.1e
new file mode 100644
index 0000000..675daeb
--- /dev/null
+++ b/debian/manpages/entrailshtml.1e
@@ -0,0 +1,62 @@
+'\" t
+.\" Title: ENTRAILSHTML
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "ENTRAILSHTML" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+entrailshtml \- Reports the internal structures in HTML
+.SH "SYNOPSIS"
+.HP \w'\fBentrailshtml\fR\ 'u
+\fBentrailshtml\fR \fB\-tables\ \fR\fB\fIlist\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
+.HP \w'\fBentrailshtml\fR\ 'u
+\fBentrailshtml\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBentrailshtml\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Utils:Misc" command group(s)\&.
+.SH "OPTIONS"
+.SS "required section"
+.PP
+\fB\-tables\fR \fIlist\fR
+.RS 4
+Default value: all
+.RE
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+entrailshtml is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/entrailswiki.1e b/debian/manpages/entrailswiki.1e
new file mode 100644
index 0000000..1d8264e
--- /dev/null
+++ b/debian/manpages/entrailswiki.1e
@@ -0,0 +1,62 @@
+'\" t
+.\" Title: ENTRAILSWIKI
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "ENTRAILSWIKI" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+entrailswiki \- Reports the internal structures in wikitext
+.SH "SYNOPSIS"
+.HP \w'\fBentrailswiki\fR\ 'u
+\fBentrailswiki\fR \fB\-tables\ \fR\fB\fIlist\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
+.HP \w'\fBentrailswiki\fR\ 'u
+\fBentrailswiki\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBentrailswiki\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Utils:Misc" command group(s)\&.
+.SH "OPTIONS"
+.SS "required section"
+.PP
+\fB\-tables\fR \fIlist\fR
+.RS 4
+Default value: all
+.RE
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+entrailswiki is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/entret.1e b/debian/manpages/entret.1e
index ce6b88e..0ad41c3 100644
--- a/debian/manpages/entret.1e
+++ b/debian/manpages/entret.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ENTRET
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ENTRET" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ENTRET" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ entret is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/epestfind.1e b/debian/manpages/epestfind.1e
index c0c3b8a..9f681ba 100644
--- a/debian/manpages/epestfind.1e
+++ b/debian/manpages/epestfind.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EPESTFIND
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EPESTFIND" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EPESTFIND" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -104,7 +104,7 @@ epestfind is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/eprimer3.1e b/debian/manpages/eprimer3.1e
index 906548e..dbb214f 100644
--- a/debian/manpages/eprimer3.1e
+++ b/debian/manpages/eprimer3.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EPRIMER3
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EPRIMER3" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EPRIMER3" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -22,7 +22,7 @@
eprimer3 \- Picks PCR primers and hybridization oligos
.SH "SYNOPSIS"
.HP \w'\fBeprimer3\fR\ 'u
-\fBeprimer3\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR [\fB\-primer\ \fR\fB\fItoggle\fR\fR] \fB\-task\ \fR\fB\fIlist\fR\fR [\fB\-hybridprobe\ \fR\fB\fItoggle\fR\fR] \fB\-mishyblibraryfile\ \fR\fB\fIinfile\fR\fR \fB\-mispriminglibraryfile\ \fR\fB\fIinfile\fR\fR [\fB\-numreturn\ \fR\fB\fIinteger\fR\fR] [\fB\-includedregion\ \fR\fB\fIrange\fR\fR] [\fB\-target\ \fR\fB\fIrange\fR\fR] [\fB\-excludedregion\ \fR\fB\fIrange\fR\fR] [\fB\-forwardinput\ \fR\fB\fIstring\fR\fR] [\fB\-reverseinput\ \fR\fB\fIstring\fR\fR] \fB\-gcclamp\ \fR\fB\fIinteger\fR\fR \fB\-osize\ \fR\fB\fIinteger\fR\fR \fB\-minsize\ \fR\fB\fIinteger\fR\fR \fB\-maxsize\ \fR\fB\fIinteger\fR\fR \fB\-otm\ \fR\fB\fIfloat\fR\fR \fB\-mintm\ \fR\fB\fIfloat\fR\fR \fB\-maxtm\ \fR\fB\fIfloat\fR\fR \fB\-maxdifftm\ \fR\fB\fIfloat\fR\fR \fB\-ogcpercent\ \fR\fB\fIfloat\fR\fR \fB\-mingc\ \fR\fB\fIfloat\fR\fR \fB\-maxgc\ \fR\fB\fIfloat\fR\fR \fB\-saltconc\ \fR\fB\fIfloat\fR\fR \fB\-dnaconc\ \fR\fB\fIfloat\fR\fR \fB\-maxpolyx\ \fR\fB\fIinteger\fR\fR \fB\-psizeopt\ \fR\fB\fIinteger\fR\fR \fB\-prange\ \fR\fB\fIrange\fR\fR \fB\-ptmopt\ \fR\fB\fIfloat\fR\fR \fB\-ptmmin\ \fR\fB\fIfloat\fR\fR \fB\-ptmmax\ \fR\fB\fIfloat\fR\fR \fB\-oexcludedregion\ \fR\fB\fIrange\fR\fR \fB\-oligoinput\ \fR\fB\fIstring\fR\fR \fB\-osizeopt\ \fR\fB\fIinteger\fR\fR \fB\-ominsize\ \fR\fB\fIinteger\fR\fR \fB\-omaxsize\ \fR\fB\fIinteger\fR\fR \fB\-otmopt\ \fR\fB\fIfloat\fR\fR \fB\-otmmin\ \fR\fB\fIfloat\fR\fR \fB\-otmmax\ \fR\fB\fIfloat\fR\fR \fB\-ogcopt\ \fR\fB\fIfloat\fR\fR \fB\-ogcmin\ \fR\fB\fIfloat\fR\fR \fB\-ogcmax\ \fR\fB\fIfloat\fR\fR \fB\-osaltconc\ \fR\fB\fIfloat\fR\fR \fB\-odnaconc\ \fR\fB\fIfloat\fR\fR \fB\-oanyself\ \fR\fB\fIfloat\fR\fR \fB\-oendself\ \fR\fB\fIfloat\fR\fR \fB\-opolyxmax\ \fR\fB\fIinteger\fR\fR \fB\-omishybmax\ \fR\fB\fIfloat\fR\fR \fB\-explainflag\ \fR\fB\fIboolean\fR\fR \fB\-fileflag\ \fR\fB\fIboolean\fR\fR \fB\-firstbaseindex\ \fR\fB\fIinteger\fR\fR \fB\-pickanyway\ \fR\fB\fIboolean\fR\fR \fB\-maxmispriming\ \fR\fB\fIfloat\fR\fR \fB\-pairmaxmispriming\ \fR\fB\fIfloat\fR\fR \fB\-numnsaccepted\ \fR\fB\fIinteger\fR\fR \fB\-selfany\ \fR\fB\fIfloat\fR\fR \fB\-selfend\ \fR\fB\fIfloat\fR\fR \fB\-maxendstability\ \fR\fB\fIfloat\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
+\fBeprimer3\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR [\fB\-primer\ \fR\fB\fItoggle\fR\fR] \fB\-task\ \fR\fB\fIlist\fR\fR [\fB\-hybridprobe\ \fR\fB\fItoggle\fR\fR] \fB\-mishyblibraryfile\ \fR\fB\fIinfile\fR\fR \fB\-mispriminglibraryfile\ \fR\fB\fIinfile\fR\fR [\fB\-numreturn\ \fR\fB\fIinteger\fR\fR] [\fB\-includedregion\ \fR\fB\fIrange\fR\fR] [\fB\-targetregion\ \fR\fB\fIrange\fR\fR] [\fB\-excludedregion\ \fR\fB\fIrange\fR\fR] [\fB\-forwardinput\ \fR\fB\fIstring\fR\fR] [\fB\-reverseinput\ \fR\fB\fIstring\fR\fR] \fB\-gcclamp\ \fR\fB\fIinteger\fR\fR \fB\-osize\ \fR\fB\fIinteger\fR\fR \fB\-minsize\ \fR\fB\fIinteger\fR\fR \fB\-maxsize\ \fR\fB\fIinteger\fR\fR \fB\-otm\ \fR\fB\fIfloat\fR\fR \fB\-mintm\ \fR\fB\fIfloat\fR\fR \fB\-maxtm\ \fR\fB\fIfloat\fR\fR \fB\-maxdifftm\ \fR\fB\fIfloat\fR\fR \fB\-ogcpercent\ \fR\fB\fIfloat\fR\fR \fB\-mingc\ \fR\fB\fIfloat\fR\fR \fB\-maxgc\ \fR\fB\fIfloat\fR\fR \fB\-saltconc\ \fR\fB\fIfloat\fR\fR \fB\-dnaconc\ \fR\fB\fIfloat\fR\fR \fB\-maxpolyx\ \fR\fB\fIinteger\fR\fR \fB\-psizeopt\ \fR\fB\fIinteger\fR\fR \fB\-prange\ \fR\fB\fIrange\fR\fR \fB\-ptmopt\ \fR\fB\fIfloat\fR\fR \fB\-ptmmin\ \fR\fB\fIfloat\fR\fR \fB\-ptmmax\ \fR\fB\fIfloat\fR\fR \fB\-oexcludedregion\ \fR\fB\fIrange\fR\fR \fB\-oligoinput\ \fR\fB\fIstring\fR\fR \fB\-osizeopt\ \fR\fB\fIinteger\fR\fR \fB\-ominsize\ \fR\fB\fIinteger\fR\fR \fB\-omaxsize\ \fR\fB\fIinteger\fR\fR \fB\-otmopt\ \fR\fB\fIfloat\fR\fR \fB\-otmmin\ \fR\fB\fIfloat\fR\fR \fB\-otmmax\ \fR\fB\fIfloat\fR\fR \fB\-ogcopt\ \fR\fB\fIfloat\fR\fR \fB\-ogcmin\ \fR\fB\fIfloat\fR\fR \fB\-ogcmax\ \fR\fB\fIfloat\fR\fR \fB\-osaltconc\ \fR\fB\fIfloat\fR\fR \fB\-odnaconc\ \fR\fB\fIfloat\fR\fR \fB\-oanyself\ \fR\fB\fIfloat\fR\fR \fB\-oendself\ \fR\fB\fIfloat\fR\fR \fB\-opolyxmax\ \fR\fB\fIinteger\fR\fR \fB\-omishybmax\ \fR\fB\fIfloat\fR\fR \fB\-explainflag\ \fR\fB\fIboolean\fR\fR \fB\-fileflag\ \fR\fB\fIboolean\fR\fR \fB\-firstbaseindex\ \fR\fB\fIinteger\fR\fR \fB\-pickanyway\ \fR\fB\fIboolean\fR\fR \fB\-maxmispriming\ \fR\fB\fIfloat\fR\fR \fB\-pairmaxmispriming\ \fR\fB\fIfloat\fR\fR \fB\-numnsaccepted\ \fR\fB\fIinteger\fR\fR \fB\-selfany\ \fR\fB\fIfloat\fR\fR \fB\-selfend\ \fR\fB\fIfloat\fR\fR \fB\-maxendstability\ \fR\fB\fIfloat\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
.HP \w'\fBeprimer3\fR\ 'u
\fBeprimer3\fR \fB\-help\fR
.SH "DESCRIPTION"
@@ -75,7 +75,7 @@ The maximum number of primer pairs to return\&. Primer pairs returned are sorted
A sub\-region of the given sequence in which to pick primers\&. For example, often the first dozen or so bases of a sequence are vector, and should be excluded from consideration\&. The value for this parameter has the form (start),(end) where (start) is the index of the first base to consider, and (end) is the last in the primer\-picking region\&.
.RE
.PP
-\fB\-target\fR \fIrange\fR
+\fB\-targetregion\fR \fIrange\fR
.RS 4
If one or more Targets is specified then a legal primer pair must flank at least one of them\&. A Target might be a simple sequence repeat site (for example a CA repeat) or a single\-base\-pair polymorphism\&. The value should be a space\-separated list of (start),(end) pairs where (start) is the index of the first base of a Target, and (end) is the last E\&.g\&. 50,51 requires primers to surround the 2 bases at positions 50 and 51\&.
.RE
@@ -345,7 +345,7 @@ eprimer3 is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/equicktandem.1e b/debian/manpages/equicktandem.1e
index 31c9ccd..80ee477 100644
--- a/debian/manpages/equicktandem.1e
+++ b/debian/manpages/equicktandem.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EQUICKTANDEM
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EQUICKTANDEM" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EQUICKTANDEM" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -65,7 +65,7 @@ equicktandem is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/est2genome.1e b/debian/manpages/est2genome.1e
index a05eb18..3ab4596 100644
--- a/debian/manpages/est2genome.1e
+++ b/debian/manpages/est2genome.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EST2GENOME
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EST2GENOME" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EST2GENOME" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -84,7 +84,7 @@ Use donor and acceptor splice sites\&. If you want to ignore donor\-acceptor sit
.PP
\fB\-mode\fR \fIlist\fR
.RS 4
-This determines the comparion mode\&. The default value is \'both\', in which case both strands of the est are compared assuming a forward gene direction (ie GT/AG splice sites), and the best comparsion redone assuming a reversed (CT/AC) gene splicing direction\&. The other allowed modes are \'forward\', when just the forward strand is searched, and \'reverse\', ditto for the reverse strand\&. Default value: both
+This determines the comparison mode\&. The default value is \'both\', in which case both strands of the est are compared assuming a forward gene direction (ie GT/AG splice sites), and the best comparison redone assuming a reversed (CT/AC) gene splicing direction\&. The other allowed modes are \'forward\', when just the forward strand is searched, and \'reverse\', ditto for the reverse strand\&. Default value: both
.RE
.PP
\fB\-best\fR \fIboolean\fR
@@ -130,7 +130,7 @@ est2genome is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/etandem.1e b/debian/manpages/etandem.1e
index 8a87afa..f945f4b 100644
--- a/debian/manpages/etandem.1e
+++ b/debian/manpages/etandem.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ETANDEM
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ETANDEM" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ETANDEM" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -79,7 +79,7 @@ etandem is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/extractalign.1e b/debian/manpages/extractalign.1e
index ab91772..c4fae80 100644
--- a/debian/manpages/extractalign.1e
+++ b/debian/manpages/extractalign.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EXTRACTALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EXTRACTALIGN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EXTRACTALIGN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ extractalign is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/extractfeat.1e b/debian/manpages/extractfeat.1e
index 6278490..fe2bd84 100644
--- a/debian/manpages/extractfeat.1e
+++ b/debian/manpages/extractfeat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EXTRACTFEAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EXTRACTFEAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EXTRACTFEAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -79,7 +79,7 @@ Tags are the types of extra values that a feature may have\&. For example in the
.PP
\fB\-value\fR \fIstring\fR
.RS 4
-Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. For example in the EMBL feature table, a \'CDS\' type of feature may have the tags \'/codon\', \'/codon_start\', \'/db_xref\', \'/EC_number\', \'/evidence\', \'/exception\', \'/function\', \'/gene\', \'/label\', \'/map\', \'/note\', \'/number\', \'/partial\', \'/product\', \'/protein_id\', \'/pseudo\', \'/standard_name\', \'/translation\', \'/transl_except\', \'/transl_table\', or \'/usedin\'\&. Only some of these tags can have values, for example \'/gene\' can have the value of the gene name\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag valueyou wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with a space or the character \'|\', eg: pax* | 10 Default value: *
+Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. For example in the EMBL feature table, a \'CDS\' type of feature may have the tags \'/codon\', \'/codon_start\', \'/db_xref\', \'/EC_number\', \'/evidence\', \'/exception\', \'/function\', \'/gene\', \'/label\', \'/map\', \'/note\', \'/number\', \'/partial\', \'/product\', \'/protein_id\', \'/pseudo\', \'/standard_name\', \'/translation\', \'/transl_except\', \'/transl_table\', or \'/usedin\'\&. Only some of these tags can have values, for example \'/gene\' can have the value of the gene name\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag value you wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with a space or the character \'|\', eg: pax* | 10 Default value: *
.RE
.SS "Output section"
.PP
@@ -111,7 +111,7 @@ extractfeat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/extractseq.1e b/debian/manpages/extractseq.1e
index feaf0f7..6373c49 100644
--- a/debian/manpages/extractseq.1e
+++ b/debian/manpages/extractseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: EXTRACTSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "EXTRACTSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "EXTRACTSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -62,7 +62,7 @@ extractseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/featcopy.1e b/debian/manpages/featcopy.1e
index 3dc6cd2..1418149 100644
--- a/debian/manpages/featcopy.1e
+++ b/debian/manpages/featcopy.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: FEATCOPY
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "FEATCOPY" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "FEATCOPY" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ featcopy is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/featreport.1e b/debian/manpages/featreport.1e
index 15f8aae..b8ebd23 100644
--- a/debian/manpages/featreport.1e
+++ b/debian/manpages/featreport.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: FEATREPORT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "FEATREPORT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "FEATREPORT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ featreport is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/finddb.1e b/debian/manpages/finddb.1e
new file mode 100644
index 0000000..017dda4
--- /dev/null
+++ b/debian/manpages/finddb.1e
@@ -0,0 +1,84 @@
+'\" t
+.\" Title: FINDDB
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "FINDDB" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+finddb \- Search for a database by keyword
+.SH "SYNOPSIS"
+.HP \w'\fBfinddb\fR\ 'u
+\fBfinddb\fR [\fB\-keyword\ \fR\fB\fIstring\fR\fR] [\fB\-all\ \fR\fB\fItoggle\fR\fR] [\fB\-name\ \fR\fB\fIboolean\fR\fR] [\fB\-server\ \fR\fB\fIboolean\fR\fR] [\fB\-desc\ \fR\fB\fIboolean\fR\fR] [\fB\-outfile\ \fR\fB\fIoutfile\fR\fR]
+.HP \w'\fBfinddb\fR\ 'u
+\fBfinddb\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBfinddb\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Display,Information" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.PP
+\fB\-keyword\fR \fIstring\fR
+.RS 4
+.RE
+.SS "Additional section"
+.PP
+\fB\-all\fR \fItoggle\fR
+.RS 4
+Default value: N
+.RE
+.PP
+\fB\-name\fR \fIboolean\fR
+.RS 4
+Default value: Y
+.RE
+.PP
+\fB\-server\fR \fIboolean\fR
+.RS 4
+Default value: Y
+.RE
+.PP
+\fB\-desc\fR \fIboolean\fR
+.RS 4
+Default value: Y
+.RE
+.SS "Advanced section"
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+Default value: stdout
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+finddb is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/findkm.1e b/debian/manpages/findkm.1e
index fe7de7d..2ee146a 100644
--- a/debian/manpages/findkm.1e
+++ b/debian/manpages/findkm.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: FINDKM
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "FINDKM" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "FINDKM" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ findkm is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/freak.1e b/debian/manpages/freak.1e
index ea34538..a9b1dd6 100644
--- a/debian/manpages/freak.1e
+++ b/debian/manpages/freak.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: FREAK
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "FREAK" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "FREAK" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -76,7 +76,7 @@ freak is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/fuzznuc.1e b/debian/manpages/fuzznuc.1e
index 5f75d08..d182259 100644
--- a/debian/manpages/fuzznuc.1e
+++ b/debian/manpages/fuzznuc.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: FUZZNUC
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "FUZZNUC" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "FUZZNUC" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ fuzznuc is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/fuzzpro.1e b/debian/manpages/fuzzpro.1e
index bb15465..fbeeaa1 100644
--- a/debian/manpages/fuzzpro.1e
+++ b/debian/manpages/fuzzpro.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: FUZZPRO
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "FUZZPRO" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "FUZZPRO" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ fuzzpro is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/fuzztran.1e b/debian/manpages/fuzztran.1e
index 5025d34..70a2408 100644
--- a/debian/manpages/fuzztran.1e
+++ b/debian/manpages/fuzztran.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: FUZZTRAN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "FUZZTRAN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "FUZZTRAN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -65,7 +65,7 @@ fuzztran is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/garnier.1e b/debian/manpages/garnier.1e
index da6ae8f..f670c58 100644
--- a/debian/manpages/garnier.1e
+++ b/debian/manpages/garnier.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: GARNIER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "GARNIER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "GARNIER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ garnier is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/geecee.1e b/debian/manpages/geecee.1e
index c375a40..bd22ef1 100644
--- a/debian/manpages/geecee.1e
+++ b/debian/manpages/geecee.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: GEECEE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "GEECEE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "GEECEE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ geecee is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/getorf.1e b/debian/manpages/getorf.1e
index e1d3d97..fbe32f6 100644
--- a/debian/manpages/getorf.1e
+++ b/debian/manpages/getorf.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: GETORF
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "GETORF" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "GETORF" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -91,7 +91,7 @@ getorf is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/giep.1e b/debian/manpages/giep.1e
deleted file mode 100644
index 8038937..0000000
--- a/debian/manpages/giep.1e
+++ /dev/null
@@ -1,91 +0,0 @@
-'\" t
-.\" Title: GIEP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
-.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
-.\" Language: English
-.\"
-.TH "GIEP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
-.\" -----------------------------------------------------------------
-.\" * set default formatting
-.\" -----------------------------------------------------------------
-.\" disable hyphenation
-.nh
-.\" disable justification (adjust text to left margin only)
-.ad l
-.\" -----------------------------------------------------------------
-.\" * MAIN CONTENT STARTS HERE *
-.\" -----------------------------------------------------------------
-.SH "NAME"
-giep \- Calculates the isoelectric point of a protein
-.SH "SYNOPSIS"
-.HP \w'\fBgiep\fR\ 'u
-\fBgiep\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR \fB\-step\ \fR\fB\fIfloat\fR\fR \fB\-amino\ \fR\fB\fIinteger\fR\fR \fB\-termini\ \fR\fB\fIboolean\fR\fR \fB\-plot\ \fR\fB\fItoggle\fR\fR \fB\-report\ \fR\fB\fItoggle\fR\fR \fB\-graph\ \fR\fB\fIxygraph\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
-.HP \w'\fBgiep\fR\ 'u
-\fBgiep\fR \fB\-help\fR
-.SH "DESCRIPTION"
-.PP
-\fBgiep\fR
-is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Protein:Composition" command group(s)\&.
-.SH "OPTIONS"
-.SS "Input section"
-.PP
-\fB\-sequence\fR \fIseqall\fR
-.RS 4
-.RE
-.SS "Advanced section"
-.PP
-\fB\-step\fR \fIfloat\fR
-.RS 4
-Default value: \&.5
-.RE
-.PP
-\fB\-amino\fR \fIinteger\fR
-.RS 4
-Default value: 1
-.RE
-.PP
-\fB\-termini\fR \fIboolean\fR
-.RS 4
-Default value: Y
-.RE
-.SS "Output section"
-.PP
-\fB\-plot\fR \fItoggle\fR
-.RS 4
-Default value: N
-.RE
-.PP
-\fB\-report\fR \fItoggle\fR
-.RS 4
-Default value: Y
-.RE
-.PP
-\fB\-graph\fR \fIxygraph\fR
-.RS 4
-.RE
-.PP
-\fB\-outfile\fR \fIoutfile\fR
-.RS 4
-.RE
-.SH "BUGS"
-.PP
-Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
-.SH "SEE ALSO"
-.PP
-giep is fully documented via the
-\fBtfm\fR(1)
-system\&.
-.SH "AUTHOR"
-.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
-.RS 4
-Wrote the script used to autogenerate this manual page\&.
-.RE
-.SH "COPYRIGHT"
-.br
-.PP
-This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
-.sp
diff --git a/debian/manpages/helixturnhelix.1e b/debian/manpages/helixturnhelix.1e
index eb19ea2..228a2bd 100644
--- a/debian/manpages/helixturnhelix.1e
+++ b/debian/manpages/helixturnhelix.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: HELIXTURNHELIX
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "HELIXTURNHELIX" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "HELIXTURNHELIX" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ helixturnhelix is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/histogramtest.1e b/debian/manpages/histogramtest.1e
index 00ff5f2..3e55994 100644
--- a/debian/manpages/histogramtest.1e
+++ b/debian/manpages/histogramtest.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: HISTOGRAMTEST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "HISTOGRAMTEST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "HISTOGRAMTEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ histogramtest is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/hmoment.1e b/debian/manpages/hmoment.1e
index 2a13707..9e98631 100644
--- a/debian/manpages/hmoment.1e
+++ b/debian/manpages/hmoment.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: HMOMENT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "HMOMENT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "HMOMENT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -86,7 +86,7 @@ hmoment is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/idtell.1e b/debian/manpages/idtell.1e
new file mode 100644
index 0000000..1c533e4
--- /dev/null
+++ b/debian/manpages/idtell.1e
@@ -0,0 +1,65 @@
+'\" t
+.\" Title: IDTELL
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "IDTELL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+idtell \- Identify the type of a data identifier / query term
+.SH "SYNOPSIS"
+.HP \w'\fBidtell\fR\ 'u
+\fBidtell\fR [\fB\-identifier\ \fR\fB\fIstring\fR\fR] \fB\-dbref\ \fR\fB\fIdatafile\fR\fR
+.HP \w'\fBidtell\fR\ 'u
+\fBidtell\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBidtell\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Information" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.PP
+\fB\-identifier\fR \fIstring\fR
+.RS 4
+.RE
+.PP
+\fB\-dbref\fR \fIdatafile\fR
+.RS 4
+File of database information including identifier, description, type, URL etc\&. Default value: dbref\&.dat
+.RE
+.SS "Required section"
+.SS "Additional section"
+.SS "Advanced section"
+.SS "Output section"
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+idtell is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/iep.1e b/debian/manpages/iep.1e
index 4b7e0f9..2eaaa59 100644
--- a/debian/manpages/iep.1e
+++ b/debian/manpages/iep.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: IEP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "IEP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "IEP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -94,7 +94,7 @@ iep is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/infoalign.1e b/debian/manpages/infoalign.1e
index a75915e..992e045 100644
--- a/debian/manpages/infoalign.1e
+++ b/debian/manpages/infoalign.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: INFOALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "INFOALIGN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "INFOALIGN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -148,7 +148,7 @@ infoalign is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/infobase.1e b/debian/manpages/infobase.1e
index 1348acd..f1ea8c5 100644
--- a/debian/manpages/infobase.1e
+++ b/debian/manpages/infobase.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: INFOBASE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "INFOBASE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "INFOBASE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ infobase is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/inforesidue.1e b/debian/manpages/inforesidue.1e
index c3e5a29..d85987c 100644
--- a/debian/manpages/inforesidue.1e
+++ b/debian/manpages/inforesidue.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: INFORESIDUE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "INFORESIDUE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "INFORESIDUE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -64,7 +64,7 @@ inforesidue is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/infoseq.1e b/debian/manpages/infoseq.1e
index 8e54e6a..9ee0215 100644
--- a/debian/manpages/infoseq.1e
+++ b/debian/manpages/infoseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: INFOSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "INFOSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "INFOSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -22,7 +22,7 @@
infoseq \- Display basic information about sequences
.SH "SYNOPSIS"
.HP \w'\fBinfoseq\fR\ 'u
-\fBinfoseq\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR \fB\-columns\ \fR\fB\fIboolean\fR\fR \fB\-delimiter\ \fR\fB\fIstring\fR\fR [\fB\-outfile\ \fR\fB\fIoutfile\fR\fR] [\fB\-html\ \fR\fB\fIboolean\fR\fR] \fB\-only\ \fR\fB\fIboolean\fR\fR \fB\-heading\ \fR\fB\fIboolean\fR\fR \fB\-usa\ \fR\fB\fIboolean\fR\fR \fB\-database\ \fR\fB\fIboolean\fR\fR \fB\-name\ \fR\fB\fIboolean\fR\fR \fB\-accession\ \fR\fB\fIboolean\fR\fR \fB\-gi\ \fR\fB\fIboolean\fR\fR \fB\-version\ \fR\fB\fIboolean\fR\fR \fB\-type\ \fR\fB\fIboolean\fR\fR \fB\-length\ \fR\fB\fIboolean\fR\fR \fB\-pgc\ \fR\fB\fIboolean\fR\fR \fB\-description\ \fR\fB\fIboolean\fR\fR
+\fBinfoseq\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR \fB\-columns\ \fR\fB\fIboolean\fR\fR \fB\-delimiter\ \fR\fB\fIstring\fR\fR [\fB\-outfile\ \fR\fB\fIoutfile\fR\fR] [\fB\-html\ \fR\fB\fIboolean\fR\fR] \fB\-only\ \fR\fB\fIboolean\fR\fR \fB\-heading\ \fR\fB\fIboolean\fR\fR \fB\-usa\ \fR\fB\fIboolean\fR\fR \fB\-database\ \fR\fB\fIboolean\fR\fR \fB\-name\ \fR\fB\fIboolean\fR\fR \fB\-accession\ \fR\fB\fIboolean\fR\fR \fB\-gi\ \fR\fB\fIboolean\fR\fR \fB\-seqversion\ \fR\fB\fIboolean\fR\fR \fB\-type\ \fR\fB\fIboolean\fR\fR \fB\-length\ \fR\fB\fIboolean\fR\fR \fB\-pgc\ \fR\fB\fIboolean\fR\fR \fB\-description\ \fR\fB\fIboolean\fR\fR
.HP \w'\fBinfoseq\fR\ 'u
\fBinfoseq\fR \fB\-help\fR
.SH "DESCRIPTION"
@@ -93,7 +93,7 @@ Default value: @(!$(only))
Default value: N
.RE
.PP
-\fB\-version\fR \fIboolean\fR
+\fB\-seqversion\fR \fIboolean\fR
.RS 4
Default value: N
.RE
@@ -127,7 +127,7 @@ infoseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/intconv.1e b/debian/manpages/intconv.1e
index 3c9b954..e9347ab 100644
--- a/debian/manpages/intconv.1e
+++ b/debian/manpages/intconv.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: INTCONV
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "INTCONV" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "INTCONV" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ intconv is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/isochore.1e b/debian/manpages/isochore.1e
index 741adaa..e30244f 100644
--- a/debian/manpages/isochore.1e
+++ b/debian/manpages/isochore.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ISOCHORE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ISOCHORE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ISOCHORE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -65,7 +65,7 @@ isochore is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/jaspextract.1e b/debian/manpages/jaspextract.1e
index 96a108b..535bd41 100644
--- a/debian/manpages/jaspextract.1e
+++ b/debian/manpages/jaspextract.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: JASPEXTRACT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "JASPEXTRACT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "JASPEXTRACT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -46,7 +46,7 @@ jaspextract is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/jaspscan.1e b/debian/manpages/jaspscan.1e
index 67d594d..29a9c41 100644
--- a/debian/manpages/jaspscan.1e
+++ b/debian/manpages/jaspscan.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: JASPSCAN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "JASPSCAN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "JASPSCAN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -77,7 +77,7 @@ jaspscan is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/lindna.1e b/debian/manpages/lindna.1e
index 98d635e..7026098 100644
--- a/debian/manpages/lindna.1e
+++ b/debian/manpages/lindna.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: LINDNA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "LINDNA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "LINDNA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -137,7 +137,7 @@ lindna is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/listor.1e b/debian/manpages/listor.1e
index fa91763..6158f43 100644
--- a/debian/manpages/listor.1e
+++ b/debian/manpages/listor.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: LISTOR
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "LISTOR" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "LISTOR" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ listor is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/makenucseq.1e b/debian/manpages/makenucseq.1e
index ed1b76d..0a7a4b1 100644
--- a/debian/manpages/makenucseq.1e
+++ b/debian/manpages/makenucseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MAKENUCSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MAKENUCSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MAKENUCSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -77,7 +77,7 @@ makenucseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/makeprotseq.1e b/debian/manpages/makeprotseq.1e
index fe3a7e5..37c36c0 100644
--- a/debian/manpages/makeprotseq.1e
+++ b/debian/manpages/makeprotseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MAKEPROTSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MAKEPROTSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MAKEPROTSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -77,7 +77,7 @@ makeprotseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/marscan.1e b/debian/manpages/marscan.1e
index a1374c5..22c186b 100644
--- a/debian/manpages/marscan.1e
+++ b/debian/manpages/marscan.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MARSCAN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MARSCAN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MARSCAN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -51,7 +51,7 @@ marscan is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/maskambignuc.1e b/debian/manpages/maskambignuc.1e
index e3072cc..b19326a 100644
--- a/debian/manpages/maskambignuc.1e
+++ b/debian/manpages/maskambignuc.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MASKAMBIGNUC
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MASKAMBIGNUC" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MASKAMBIGNUC" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ maskambignuc is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/maskambigprot.1e b/debian/manpages/maskambigprot.1e
index 2259e22..49c1f74 100644
--- a/debian/manpages/maskambigprot.1e
+++ b/debian/manpages/maskambigprot.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MASKAMBIGPROT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MASKAMBIGPROT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MASKAMBIGPROT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ maskambigprot is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/maskfeat.1e b/debian/manpages/maskfeat.1e
index d92750b..2388461 100644
--- a/debian/manpages/maskfeat.1e
+++ b/debian/manpages/maskfeat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MASKFEAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MASKFEAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MASKFEAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ maskfeat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/maskseq.1e b/debian/manpages/maskseq.1e
index 3445078..862a882 100644
--- a/debian/manpages/maskseq.1e
+++ b/debian/manpages/maskseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MASKSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MASKSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MASKSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ maskseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/matcher.1e b/debian/manpages/matcher.1e
index 2099954..3da98f3 100644
--- a/debian/manpages/matcher.1e
+++ b/debian/manpages/matcher.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MATCHER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MATCHER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MATCHER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -75,7 +75,7 @@ matcher is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/megamerger.1e b/debian/manpages/megamerger.1e
index ff98171..028289b 100644
--- a/debian/manpages/megamerger.1e
+++ b/debian/manpages/megamerger.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MEGAMERGER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MEGAMERGER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MEGAMERGER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ megamerger is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/merger.1e b/debian/manpages/merger.1e
index 7c4bba6..2006815 100644
--- a/debian/manpages/merger.1e
+++ b/debian/manpages/merger.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MERGER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MERGER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MERGER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -74,7 +74,7 @@ merger is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/msbar.1e b/debian/manpages/msbar.1e
index 50a3800..c17d1dc 100644
--- a/debian/manpages/msbar.1e
+++ b/debian/manpages/msbar.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MSBAR
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MSBAR" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MSBAR" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -91,7 +91,7 @@ msbar is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/mwcontam.1e b/debian/manpages/mwcontam.1e
index 1744dce..8018306 100644
--- a/debian/manpages/mwcontam.1e
+++ b/debian/manpages/mwcontam.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MWCONTAM
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MWCONTAM" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MWCONTAM" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ mwcontam is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/mwfilter.1e b/debian/manpages/mwfilter.1e
index f3fb8f0..eb9f5d8 100644
--- a/debian/manpages/mwfilter.1e
+++ b/debian/manpages/mwfilter.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: MWFILTER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "MWFILTER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "MWFILTER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ mwfilter is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/needle.1e b/debian/manpages/needle.1e
index 61c3439..9012f07 100644
--- a/debian/manpages/needle.1e
+++ b/debian/manpages/needle.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NEEDLE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NEEDLE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NEEDLE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -22,7 +22,7 @@
needle \- Needleman\-Wunsch global alignment of two sequences
.SH "SYNOPSIS"
.HP \w'\fBneedle\fR\ 'u
-\fBneedle\fR \fB\-asequence\ \fR\fB\fIsequence\fR\fR \fB\-bsequence\ \fR\fB\fIseqall\fR\fR [\fB\-datafile\ \fR\fB\fImatrixf\fR\fR] \fB\-gapopen\ \fR\fB\fIfloat\fR\fR \fB\-gapextend\ \fR\fB\fIfloat\fR\fR \fB\-brief\ \fR\fB\fIboolean\fR\fR \fB\-outfile\ \fR\fB\fIalign\fR\fR
+\fBneedle\fR \fB\-asequence\ \fR\fB\fIsequence\fR\fR \fB\-bsequence\ \fR\fB\fIseqall\fR\fR [\fB\-datafile\ \fR\fB\fImatrixf\fR\fR] \fB\-gapopen\ \fR\fB\fIfloat\fR\fR \fB\-gapextend\ \fR\fB\fIfloat\fR\fR [\fB\-endweight\ \fR\fB\fIboolean\fR\fR] [\fB\-endopen\ \fR\fB\fIfloat\fR\fR] [\fB\-endextend\ \fR\fB\fIfloat\fR\fR] \fB\-brief\ \fR\fB\fIboolean\fR\fR \fB\-outfile\ \fR\fB\fIalign\fR\fR
.HP \w'\fBneedle\fR\ 'u
\fBneedle\fR \fB\-help\fR
.SH "DESCRIPTION"
@@ -55,6 +55,21 @@ The gap open penalty is the score taken away when a gap is created\&. The best v
.RS 4
The gap extension, penalty is added to the standard gap penalty for each base or residue in the gap\&. This is how long gaps are penalized\&. Usually you will expect a few long gaps rather than many short gaps, so the gap extension penalty should be lower than the gap penalty\&. An exception is where one or both sequences are single reads with possible sequencing errors in which case you would expect many single base gaps\&. You can get this result by setting the gap open penalty to zero (or very low) and using the gap extension penalty to control gap scoring\&. Default value: @($(acdprotein)? 0\&.5 : 0\&.5 )
.RE
+.PP
+\fB\-endweight\fR \fIboolean\fR
+.RS 4
+Default value: N
+.RE
+.PP
+\fB\-endopen\fR \fIfloat\fR
+.RS 4
+The end gap open penalty is the score taken away when an end gap is created\&. The best value depends on the choice of comparison matrix\&. The default value assumes you are using the EBLOSUM62 matrix for protein sequences, and the EDNAFULL matrix for nucleotide sequences\&. Default value: @($(acdprotein)? 10\&.0 : 10\&.0 )
+.RE
+.PP
+\fB\-endextend\fR \fIfloat\fR
+.RS 4
+The end gap extension, penalty is added to the end gap penalty for each base or residue in the end gap\&. This is how long end gaps are penalized\&. Default value: @($(acdprotein)? 0\&.5 : 0\&.5 )
+.RE
.SS "Output section"
.PP
\fB\-brief\fR \fIboolean\fR
@@ -75,7 +90,7 @@ needle is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/needleall.1e b/debian/manpages/needleall.1e
new file mode 100644
index 0000000..9ce5a9b
--- /dev/null
+++ b/debian/manpages/needleall.1e
@@ -0,0 +1,112 @@
+'\" t
+.\" Title: NEEDLEALL
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "NEEDLEALL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+needleall \- Many\-to\-many pairwise alignments of two sequence sets
+.SH "SYNOPSIS"
+.HP \w'\fBneedleall\fR\ 'u
+\fBneedleall\fR \fB\-asequence\ \fR\fB\fIseqset\fR\fR \fB\-bsequence\ \fR\fB\fIseqall\fR\fR [\fB\-datafile\ \fR\fB\fImatrixf\fR\fR] \fB\-gapopen\ \fR\fB\fIfloat\fR\fR \fB\-gapextend\ \fR\fB\fIfloat\fR\fR [\fB\-endweight\ \fR\fB\fIboolean\fR\fR] [\fB\-endopen\ \fR\fB\fIfloat\fR\fR] [\fB\-endextend\ \fR\fB\fIfloat\fR\fR] [\fB\-minscore\ \fR\fB\fIfloat\fR\fR] \fB\-brief\ \fR\fB\fIboolean\fR\fR \fB\-outfile\ \fR\fB\fIalign\fR\fR [\fB\-errorfile\ \fR\fB\fIoutfile\fR\fR]
+.HP \w'\fBneedleall\fR\ 'u
+\fBneedleall\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBneedleall\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Alignment:Global" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.PP
+\fB\-asequence\fR \fIseqset\fR
+.RS 4
+.RE
+.PP
+\fB\-bsequence\fR \fIseqall\fR
+.RS 4
+.RE
+.PP
+\fB\-datafile\fR \fImatrixf\fR
+.RS 4
+This is the scoring matrix file used when comparing sequences\&. By default it is the file \'EBLOSUM62\' (for proteins) or the file \'EDNAFULL\' (for nucleic sequences)\&. These files are found in the \'data\' directory of the EMBOSS installation\&.
+.RE
+.SS "Required section"
+.PP
+\fB\-gapopen\fR \fIfloat\fR
+.RS 4
+The gap open penalty is the score taken away when a gap is created\&. The best value depends on the choice of comparison matrix\&. The default value assumes you are using the EBLOSUM62 matrix for protein sequences, and the EDNAFULL matrix for nucleotide sequences\&. Default value: @($(acdprotein)? 10\&.0 : 10\&.0 )
+.RE
+.PP
+\fB\-gapextend\fR \fIfloat\fR
+.RS 4
+The gap extension, penalty is added to the standard gap penalty for each base or residue in the gap\&. This is how long gaps are penalized\&. Usually you will expect a few long gaps rather than many short gaps, so the gap extension penalty should be lower than the gap penalty\&. An exception is where one or both sequences are single reads with possible sequencing errors in which case you would expect many single base gaps\&. You can get this result by setting the gap open penalty to zero (or very low) and using the gap extension penalty to control gap scoring\&. Default value: @($(acdprotein)? 0\&.5 : 0\&.5 )
+.RE
+.SS "Additional section"
+.PP
+\fB\-endweight\fR \fIboolean\fR
+.RS 4
+Default value: N
+.RE
+.PP
+\fB\-endopen\fR \fIfloat\fR
+.RS 4
+The end gap open penalty is the score taken away when an end gap is created\&. The best value depends on the choice of comparison matrix\&. The default value assumes you are using the EBLOSUM62 matrix for protein sequences, and the EDNAFULL matrix for nucleotide sequences\&. Default value: @($(acdprotein)? 10\&.0 : 10\&.0 )
+.RE
+.PP
+\fB\-endextend\fR \fIfloat\fR
+.RS 4
+The end gap extension, penalty is added to the end gap penalty for each base or residue in the end gap\&. Default value: @($(acdprotein)? 0\&.5 : 0\&.5 )
+.RE
+.PP
+\fB\-minscore\fR \fIfloat\fR
+.RS 4
+Minimum alignment score to report an alignment\&.
+.RE
+.SS "Output section"
+.PP
+\fB\-brief\fR \fIboolean\fR
+.RS 4
+Brief identity and similarity Default value: Y
+.RE
+.PP
+\fB\-outfile\fR \fIalign\fR
+.RS 4
+.RE
+.PP
+\fB\-errorfile\fR \fIoutfile\fR
+.RS 4
+Error file to be written to Default value: needleall\&.error
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+needleall is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/newcoils.1e b/debian/manpages/newcoils.1e
index 6dbc4a4..fcaeae5 100644
--- a/debian/manpages/newcoils.1e
+++ b/debian/manpages/newcoils.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NEWCOILS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NEWCOILS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NEWCOILS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -83,7 +83,7 @@ newcoils is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/newcpgreport.1e b/debian/manpages/newcpgreport.1e
index 02a9161..6f04b9e 100644
--- a/debian/manpages/newcpgreport.1e
+++ b/debian/manpages/newcpgreport.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NEWCPGREPORT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NEWCPGREPORT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NEWCPGREPORT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -76,7 +76,7 @@ newcpgreport is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/newcpgseek.1e b/debian/manpages/newcpgseek.1e
index 93e88ba..2391a16 100644
--- a/debian/manpages/newcpgseek.1e
+++ b/debian/manpages/newcpgseek.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NEWCPGSEEK
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NEWCPGSEEK" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NEWCPGSEEK" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ newcpgseek is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/newseq.1e b/debian/manpages/newseq.1e
index 9c90b96..c8877dc 100644
--- a/debian/manpages/newseq.1e
+++ b/debian/manpages/newseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NEWSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NEWSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NEWSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ newseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/nohtml.1e b/debian/manpages/nohtml.1e
index 6b65cef..c9fd63f 100644
--- a/debian/manpages/nohtml.1e
+++ b/debian/manpages/nohtml.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NOHTML
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NOHTML" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NOHTML" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -53,7 +53,7 @@ nohtml is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/noreturn.1e b/debian/manpages/noreturn.1e
index fd90aa9..613bb91 100644
--- a/debian/manpages/noreturn.1e
+++ b/debian/manpages/noreturn.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NORETURN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NORETURN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NORETURN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ noreturn is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/nospace.1e b/debian/manpages/nospace.1e
index ea7f42e..802ae2c 100644
--- a/debian/manpages/nospace.1e
+++ b/debian/manpages/nospace.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NOSPACE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NOSPACE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NOSPACE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -53,7 +53,7 @@ nospace is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/notab.1e b/debian/manpages/notab.1e
index 2b719f7..eb2a69c 100644
--- a/debian/manpages/notab.1e
+++ b/debian/manpages/notab.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NOTAB
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NOTAB" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NOTAB" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -53,7 +53,7 @@ notab is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/notseq.1e b/debian/manpages/notseq.1e
index 2d97f56..3467093 100644
--- a/debian/manpages/notseq.1e
+++ b/debian/manpages/notseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NOTSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NOTSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NOTSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ notseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/nthseq.1e b/debian/manpages/nthseq.1e
index 1395378..4a29190 100644
--- a/debian/manpages/nthseq.1e
+++ b/debian/manpages/nthseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NTHSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NTHSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NTHSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ nthseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/nthseqset.1e b/debian/manpages/nthseqset.1e
index 3ad015e..197b8ec 100644
--- a/debian/manpages/nthseqset.1e
+++ b/debian/manpages/nthseqset.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: NTHSEQSET
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "NTHSEQSET" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "NTHSEQSET" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ nthseqset is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/octanol.1e b/debian/manpages/octanol.1e
index d81269f..541de2e 100644
--- a/debian/manpages/octanol.1e
+++ b/debian/manpages/octanol.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: OCTANOL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "OCTANOL" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "OCTANOL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -76,7 +76,7 @@ octanol is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/oddcomp.1e b/debian/manpages/oddcomp.1e
index 53cb52f..bb52fd7 100644
--- a/debian/manpages/oddcomp.1e
+++ b/debian/manpages/oddcomp.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ODDCOMP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ODDCOMP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ODDCOMP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -73,7 +73,7 @@ oddcomp is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/origsplitter.1e b/debian/manpages/origsplitter.1e
index ebc2990..0dcfa0a 100644
--- a/debian/manpages/origsplitter.1e
+++ b/debian/manpages/origsplitter.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ORIGSPLITTER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ORIGSPLITTER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ORIGSPLITTER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ origsplitter is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/origunion.1e b/debian/manpages/origunion.1e
index 12f7f3b..dd07a0b 100644
--- a/debian/manpages/origunion.1e
+++ b/debian/manpages/origunion.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: ORIGUNION
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "ORIGUNION" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "ORIGUNION" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ origunion is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/palindrome.1e b/debian/manpages/palindrome.1e
index 7f77c4b..bdce766 100644
--- a/debian/manpages/palindrome.1e
+++ b/debian/manpages/palindrome.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PALINDROME
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PALINDROME" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PALINDROME" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -75,7 +75,7 @@ palindrome is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pasteseq.1e b/debian/manpages/pasteseq.1e
index 33b4a0a..6acba86 100644
--- a/debian/manpages/pasteseq.1e
+++ b/debian/manpages/pasteseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PASTESEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PASTESEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PASTESEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ pasteseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/patmatdb.1e b/debian/manpages/patmatdb.1e
index 2907bd6..e628c4d 100644
--- a/debian/manpages/patmatdb.1e
+++ b/debian/manpages/patmatdb.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PATMATDB
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PATMATDB" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PATMATDB" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ patmatdb is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/patmatmotifs.1e b/debian/manpages/patmatmotifs.1e
index 0372778..413f1f8 100644
--- a/debian/manpages/patmatmotifs.1e
+++ b/debian/manpages/patmatmotifs.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PATMATMOTIFS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PATMATMOTIFS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PATMATMOTIFS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ patmatmotifs is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/patmattest.1e b/debian/manpages/patmattest.1e
index a98807c..62841bc 100644
--- a/debian/manpages/patmattest.1e
+++ b/debian/manpages/patmattest.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PATMATTEST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PATMATTEST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PATMATTEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ patmattest is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pepcoil.1e b/debian/manpages/pepcoil.1e
index 45bfa95..2580349 100644
--- a/debian/manpages/pepcoil.1e
+++ b/debian/manpages/pepcoil.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PEPCOIL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PEPCOIL" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PEPCOIL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -71,7 +71,7 @@ pepcoil is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pepinfo.1e b/debian/manpages/pepinfo.1e
index 6e6b968..9cce5c2 100644
--- a/debian/manpages/pepinfo.1e
+++ b/debian/manpages/pepinfo.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PEPINFO
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PEPINFO" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PEPINFO" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -80,7 +80,7 @@ pepinfo is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pepnet.1e b/debian/manpages/pepnet.1e
index e41e455..d0074c7 100644
--- a/debian/manpages/pepnet.1e
+++ b/debian/manpages/pepnet.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PEPNET
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PEPNET" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PEPNET" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ pepnet is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pepstats.1e b/debian/manpages/pepstats.1e
index d9d482a..08401cd 100644
--- a/debian/manpages/pepstats.1e
+++ b/debian/manpages/pepstats.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PEPSTATS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PEPSTATS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PEPSTATS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -71,7 +71,7 @@ pepstats is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pepwheel.1e b/debian/manpages/pepwheel.1e
index 3c758c3..9fbd66d 100644
--- a/debian/manpages/pepwheel.1e
+++ b/debian/manpages/pepwheel.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PEPWHEEL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PEPWHEEL" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PEPWHEEL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -86,7 +86,7 @@ pepwheel is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pepwindow.1e b/debian/manpages/pepwindow.1e
index bda12f5..7fa283c 100644
--- a/debian/manpages/pepwindow.1e
+++ b/debian/manpages/pepwindow.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PEPWINDOW
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PEPWINDOW" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PEPWINDOW" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ pepwindow is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pepwindowall.1e b/debian/manpages/pepwindowall.1e
index a2869f5..6e02b1a 100644
--- a/debian/manpages/pepwindowall.1e
+++ b/debian/manpages/pepwindowall.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PEPWINDOWALL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PEPWINDOWALL" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PEPWINDOWALL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ pepwindowall is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/plotcon.1e b/debian/manpages/plotcon.1e
index 6c8aaa5..de8e2e0 100644
--- a/debian/manpages/plotcon.1e
+++ b/debian/manpages/plotcon.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PLOTCON
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PLOTCON" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PLOTCON" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -62,7 +62,7 @@ plotcon is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/plotorf.1e b/debian/manpages/plotorf.1e
index 7e6ff5b..549caf3 100644
--- a/debian/manpages/plotorf.1e
+++ b/debian/manpages/plotorf.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PLOTORF
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PLOTORF" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PLOTORF" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ plotorf is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/polydot.1e b/debian/manpages/polydot.1e
index 12b465c..66f42ad 100644
--- a/debian/manpages/polydot.1e
+++ b/debian/manpages/polydot.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: POLYDOT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "POLYDOT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "POLYDOT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -76,7 +76,7 @@ polydot is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/preg.1e b/debian/manpages/preg.1e
index f4073ca..db5c10a 100644
--- a/debian/manpages/preg.1e
+++ b/debian/manpages/preg.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PREG
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PREG" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PREG" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ preg is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/prettyplot.1e b/debian/manpages/prettyplot.1e
index bc9d376..d3e6b8f 100644
--- a/debian/manpages/prettyplot.1e
+++ b/debian/manpages/prettyplot.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PRETTYPLOT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PRETTYPLOT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PRETTYPLOT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -171,7 +171,7 @@ prettyplot is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/prettyseq.1e b/debian/manpages/prettyseq.1e
index f826d2a..18bd970 100644
--- a/debian/manpages/prettyseq.1e
+++ b/debian/manpages/prettyseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PRETTYSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PRETTYSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PRETTYSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -82,7 +82,7 @@ prettyseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/prima.1e b/debian/manpages/prima.1e
index b9537a9..32a4d53 100644
--- a/debian/manpages/prima.1e
+++ b/debian/manpages/prima.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PRIMA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PRIMA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PRIMA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -146,7 +146,7 @@ prima is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/primers.1e b/debian/manpages/primers.1e
index 40a393b..cb9fab5 100644
--- a/debian/manpages/primers.1e
+++ b/debian/manpages/primers.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PRIMERS
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PRIMERS" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PRIMERS" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -22,7 +22,7 @@
primers \- Simple version of primer3 to pick PCR primers
.SH "SYNOPSIS"
.HP \w'\fBprimers\fR\ 'u
-\fBprimers\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR [\fB\-target\ \fR\fB\fIrange\fR\fR] [\fB\-minsize\ \fR\fB\fIinteger\fR\fR] [\fB\-maxsize\ \fR\fB\fIinteger\fR\fR] [\fB\-maxdifftm\ \fR\fB\fIfloat\fR\fR] [\fB\-explainflag\ \fR\fB\fIboolean\fR\fR] [\fB\-numreturn\ \fR\fB\fIinteger\fR\fR] \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
+\fBprimers\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR [\fB\-targetregion\ \fR\fB\fIrange\fR\fR] [\fB\-minsize\ \fR\fB\fIinteger\fR\fR] [\fB\-maxsize\ \fR\fB\fIinteger\fR\fR] [\fB\-maxdifftm\ \fR\fB\fIfloat\fR\fR] [\fB\-explainflag\ \fR\fB\fIboolean\fR\fR] [\fB\-numreturn\ \fR\fB\fIinteger\fR\fR] \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
.HP \w'\fBprimers\fR\ 'u
\fBprimers\fR \fB\-help\fR
.SH "DESCRIPTION"
@@ -38,7 +38,7 @@ The sequence from which to choose primers\&. The sequence must be presented 5\'
.RE
.SS "Additional section"
.PP
-\fB\-target\fR \fIrange\fR
+\fB\-targetregion\fR \fIrange\fR
.RS 4
If one or more Targets is specified then a legal primer pair must flank at least one of them\&. A Target might be a simple sequence repeat site (for example a CA repeat) or a single\-base\-pair polymorphism\&. The value should be a space\-separated list of <start>,<end> pairs where <start> is the index of the first base of a Target, and <end> is the last E\&.g\&. 50,51 requires primers to surround the 2 bases at positions 50 and 51\&.
.RE
@@ -82,7 +82,7 @@ primers is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/primersearch.1e b/debian/manpages/primersearch.1e
index c7dd3f6..fc3cea1 100644
--- a/debian/manpages/primersearch.1e
+++ b/debian/manpages/primersearch.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PRIMERSEARCH
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PRIMERSEARCH" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PRIMERSEARCH" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -59,7 +59,7 @@ primersearch is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/printsextract.1e b/debian/manpages/printsextract.1e
index 23b3e07..6b8e8bb 100644
--- a/debian/manpages/printsextract.1e
+++ b/debian/manpages/printsextract.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PRINTSEXTRACT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PRINTSEXTRACT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PRINTSEXTRACT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -45,7 +45,7 @@ printsextract is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/profit.1e b/debian/manpages/profit.1e
index 72eea68..1af8ed0 100644
--- a/debian/manpages/profit.1e
+++ b/debian/manpages/profit.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PROFIT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PROFIT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PROFIT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ profit is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/prophecy.1e b/debian/manpages/prophecy.1e
index 559868b..94e9e08 100644
--- a/debian/manpages/prophecy.1e
+++ b/debian/manpages/prophecy.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PROPHECY
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PROPHECY" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PROPHECY" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -83,7 +83,7 @@ prophecy is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/prophet.1e b/debian/manpages/prophet.1e
index 0c9e9a4..7c8a9ea 100644
--- a/debian/manpages/prophet.1e
+++ b/debian/manpages/prophet.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PROPHET
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PROPHET" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PROPHET" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -65,7 +65,7 @@ prophet is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/prosextract.1e b/debian/manpages/prosextract.1e
index 2d8bf13..43b31b3 100644
--- a/debian/manpages/prosextract.1e
+++ b/debian/manpages/prosextract.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PROSEXTRACT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PROSEXTRACT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PROSEXTRACT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -45,7 +45,7 @@ prosextract is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/pscan.1e b/debian/manpages/pscan.1e
index 8e6eb86..1266202 100644
--- a/debian/manpages/pscan.1e
+++ b/debian/manpages/pscan.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PSCAN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PSCAN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PSCAN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ pscan is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/psiphi.1e b/debian/manpages/psiphi.1e
index 3f95517..e81afbd 100644
--- a/debian/manpages/psiphi.1e
+++ b/debian/manpages/psiphi.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: PSIPHI
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "PSIPHI" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "PSIPHI" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -67,7 +67,7 @@ psiphi is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/rebaseextract.1e b/debian/manpages/rebaseextract.1e
index 0784844..8adae13 100644
--- a/debian/manpages/rebaseextract.1e
+++ b/debian/manpages/rebaseextract.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: REBASEEXTRACT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "REBASEEXTRACT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "REBASEEXTRACT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ rebaseextract is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/recoder.1e b/debian/manpages/recoder.1e
index b99c2d4..03e6ffb 100644
--- a/debian/manpages/recoder.1e
+++ b/debian/manpages/recoder.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: RECODER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "RECODER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "RECODER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ recoder is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/redata.1e b/debian/manpages/redata.1e
index 5ca68b0..11a9db0 100644
--- a/debian/manpages/redata.1e
+++ b/debian/manpages/redata.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: REDATA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "REDATA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "REDATA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ redata is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/remap.1e b/debian/manpages/remap.1e
index 94b8dc0..b7f16c2 100644
--- a/debian/manpages/remap.1e
+++ b/debian/manpages/remap.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: REMAP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "REMAP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "REMAP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -85,7 +85,7 @@ This allows those enzymes which have one or more \'N\' ambiguity codes in their
.PP
\fB\-plasmid\fR \fIboolean\fR
.RS 4
-If this is set then this allows searches for restriction enzyme recognition site and cut postions that span the end of the sequence to be considered\&. Default value: N
+If this is set then this allows searches for restriction enzyme recognition site and cut positions that span the end of the sequence to be considered\&. Default value: N
.RE
.PP
\fB\-methylation\fR \fIboolean\fR
@@ -205,7 +205,7 @@ remap is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/restover.1e b/debian/manpages/restover.1e
index 010d20f..a8d5479 100644
--- a/debian/manpages/restover.1e
+++ b/debian/manpages/restover.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: RESTOVER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "RESTOVER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "RESTOVER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -135,7 +135,7 @@ restover is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/restrict.1e b/debian/manpages/restrict.1e
index fa93a6e..d53cfbd 100644
--- a/debian/manpages/restrict.1e
+++ b/debian/manpages/restrict.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: RESTRICT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "RESTRICT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "RESTRICT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -94,7 +94,7 @@ This allows those enzymes which have one or more \'N\' ambiguity codes in their
.PP
\fB\-plasmid\fR \fIboolean\fR
.RS 4
-If this is set then this allows searches for restriction enzyme recognition site and cut postions that span the end of the sequence to be considered\&. Default value: N
+If this is set then this allows searches for restriction enzyme recognition site and cut positions that span the end of the sequence to be considered\&. Default value: N
.RE
.PP
\fB\-methylation\fR \fIboolean\fR
@@ -141,7 +141,7 @@ restrict is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/revseq.1e b/debian/manpages/revseq.1e
index 1c1650f..72b1028 100644
--- a/debian/manpages/revseq.1e
+++ b/debian/manpages/revseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: REVSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "REVSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "REVSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -61,7 +61,7 @@ revseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seealso.1e b/debian/manpages/seealso.1e
index 0d5515a..e491703 100644
--- a/debian/manpages/seealso.1e
+++ b/debian/manpages/seealso.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEEALSO
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEEALSO" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEEALSO" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -90,7 +90,7 @@ seealso is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqinfo.1e b/debian/manpages/seqinfo.1e
index a47ab8a..9cdbcb2 100644
--- a/debian/manpages/seqinfo.1e
+++ b/debian/manpages/seqinfo.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQINFO
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQINFO" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQINFO" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -51,7 +51,7 @@ seqinfo is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqmatchall.1e b/debian/manpages/seqmatchall.1e
index 65d48d5..9a48974 100644
--- a/debian/manpages/seqmatchall.1e
+++ b/debian/manpages/seqmatchall.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQMATCHALL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQMATCHALL" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQMATCHALL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ seqmatchall is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqret.1e b/debian/manpages/seqret.1e
index e377df1..4ee4501 100644
--- a/debian/manpages/seqret.1e
+++ b/debian/manpages/seqret.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRET
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRET" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRET" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ seqret is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqretall.1e b/debian/manpages/seqretall.1e
index f051d41..59c0176 100644
--- a/debian/manpages/seqretall.1e
+++ b/debian/manpages/seqretall.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRETALL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRETALL" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRETALL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ seqretall is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqretallfeat.1e b/debian/manpages/seqretallfeat.1e
index e19aa3b..8a9ec3d 100644
--- a/debian/manpages/seqretallfeat.1e
+++ b/debian/manpages/seqretallfeat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRETALLFEAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRETALLFEAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRETALLFEAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -50,7 +50,7 @@ seqretallfeat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqretset.1e b/debian/manpages/seqretset.1e
index ce7109c..f3e23a3 100644
--- a/debian/manpages/seqretset.1e
+++ b/debian/manpages/seqretset.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRETSET
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRETSET" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRETSET" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ seqretset is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqretsetall.1e b/debian/manpages/seqretsetall.1e
index 447d5ba..dfaa209 100644
--- a/debian/manpages/seqretsetall.1e
+++ b/debian/manpages/seqretsetall.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRETSETALL
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRETSETALL" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRETSETALL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ seqretsetall is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqretsingle.1e b/debian/manpages/seqretsingle.1e
index f1d794a..60f304e 100644
--- a/debian/manpages/seqretsingle.1e
+++ b/debian/manpages/seqretsingle.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRETSINGLE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRETSINGLE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRETSINGLE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ seqretsingle is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqretsplit.1e b/debian/manpages/seqretsplit.1e
index d1c89fb..a9fa236 100644
--- a/debian/manpages/seqretsplit.1e
+++ b/debian/manpages/seqretsplit.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRETSPLIT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRETSPLIT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRETSPLIT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -59,7 +59,7 @@ seqretsplit is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqrettype.1e b/debian/manpages/seqrettype.1e
index b662082..ec1a803 100644
--- a/debian/manpages/seqrettype.1e
+++ b/debian/manpages/seqrettype.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SEQRETTYPE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SEQRETTYPE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SEQRETTYPE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -64,7 +64,7 @@ seqrettype is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/seqxrefall.1e b/debian/manpages/seqxrefall.1e
new file mode 100644
index 0000000..f26df25
--- /dev/null
+++ b/debian/manpages/seqxrefall.1e
@@ -0,0 +1,76 @@
+'\" t
+.\" Title: SEQXREFALL
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "SEQXREFALL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+seqxrefall \- Retrieve all cross\-references for a sequence record
+.SH "SYNOPSIS"
+.HP \w'\fBseqxrefall\fR\ 'u
+\fBseqxrefall\fR \fB\-sequence\ \fR\fB\fIsequence\fR\fR \fB\-dbref\ \fR\fB\fIdatafile\fR\fR \fB\-format\ \fR\fB\fIselection\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
+.HP \w'\fBseqxrefall\fR\ 'u
+\fBseqxrefall\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBseqxrefall\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Information" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.PP
+\fB\-sequence\fR \fIsequence\fR
+.RS 4
+The sequence for which cross\-references will be retrieved\&.
+.RE
+.PP
+\fB\-dbref\fR \fIdatafile\fR
+.RS 4
+File of database information including identifier, description, type, URL etc\&. Default value: dbref\&.dat
+.RE
+.SS "Required section"
+.PP
+\fB\-format\fR \fIselection\fR
+.RS 4
+This specifies the format of the output file Default value: 1
+.RE
+.SS "Additional section"
+.SS "Advanced section"
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+Output file containing list of cross\-references
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+seqxrefall is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/showalign.1e b/debian/manpages/showalign.1e
index 7e0a4d9..e129f2a 100644
--- a/debian/manpages/showalign.1e
+++ b/debian/manpages/showalign.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SHOWALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SHOWALIGN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SHOWALIGN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -143,7 +143,7 @@ showalign is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/showdb.1e b/debian/manpages/showdb.1e
index 064e1c3..a3c8648 100644
--- a/debian/manpages/showdb.1e
+++ b/debian/manpages/showdb.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SHOWDB
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SHOWDB" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SHOWDB" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -128,7 +128,7 @@ showdb is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/showdball.1e b/debian/manpages/showdball.1e
new file mode 100644
index 0000000..a6673a8
--- /dev/null
+++ b/debian/manpages/showdball.1e
@@ -0,0 +1,130 @@
+'\" t
+.\" Title: SHOWDBALL
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "SHOWDBALL" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+showdball \- Display information on biological databases
+.SH "SYNOPSIS"
+.HP \w'\fBshowdball\fR\ 'u
+\fBshowdball\fR [\fB\-name\ \fR\fB\fIarraystring\fR\fR] \fB\-dbref\ \fR\fB\fIdatafile\fR\fR \fB\-category\ \fR\fB\fIselection\fR\fR \fB\-edam\ \fR\fB\fIselection\fR\fR \fB\-edam\ \fR\fB\fIselection\fR\fR \fB\-display\ \fR\fB\fIselection\fR\fR [\fB\-html\ \fR\fB\fItoggle\fR\fR] [\fB\-category\ \fR\fB\fIstring\fR\fR] [\fB\-all\ \fR\fB\fItoggle\fR\fR] [\fB\-name\ \fR\fB\fIboolean\fR\fR] [\fB\-server\ \fR\fB\fIboolean\fR\fR] [\fB\-desc\ \fR\fB\fIboolean\fR\fR] \fB\-edam\ \fR\fB\fIboolean\fR\fR \fB\-type\ \fR\fB\fIboolean\fR\fR [\fB\-outfile\ \fR\fB\fIoutfile\fR\fR]
+.HP \w'\fBshowdball\fR\ 'u
+\fBshowdball\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBshowdball\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Display,Information" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.PP
+\fB\-name\fR \fIarraystring\fR
+.RS 4
+Standard names of databases are given in the EMBOSS datafile \'dbref\&.dat\'\&.
+.RE
+.PP
+\fB\-dbref\fR \fIdatafile\fR
+.RS 4
+File of database information including identifier, description, type, URL etc\&. Default value: dbref\&.dat
+.RE
+.SS "Required section"
+.PP
+\fB\-category\fR \fIselection\fR
+.RS 4
+This specifies the SwissProt categories of database to display in the output file Default value: 1
+.RE
+.PP
+\fB\-edam\fR \fIselection\fR
+.RS 4
+This specifies the SwissProt categories of database to display in the output file Default value: 1
+.RE
+.PP
+\fB\-edam\fR \fIselection\fR
+.RS 4
+This specifies the SwissProt categories of database to display in the output file Default value: 1
+.RE
+.PP
+\fB\-display\fR \fIselection\fR
+.RS 4
+The output can include named database(s) only (\'database\' option), databases in one or more categories from SwissProt (\'category\') or the EDAM ontology (\'edam\'), or all known databases (\'all\')\&. Default value: database
+.RE
+.SS "Additional section"
+.PP
+\fB\-html\fR \fItoggle\fR
+.RS 4
+Default value: N
+.RE
+.PP
+\fB\-category\fR \fIstring\fR
+.RS 4
+.RE
+.PP
+\fB\-all\fR \fItoggle\fR
+.RS 4
+This will display all available columns\&. It can be combined with \-noCOLNMAE to display all but the named columns e\&.g\&. \'\-full \-nodesc\'\&. Default value: N
+.RE
+.PP
+\fB\-name\fR \fIboolean\fR
+.RS 4
+This displays the column of database names Default value: Y
+.RE
+.PP
+\fB\-server\fR \fIboolean\fR
+.RS 4
+This displays the column of URLs of database servers Default value: Y
+.RE
+.PP
+\fB\-desc\fR \fIboolean\fR
+.RS 4
+This displays the column of database short descriptions Default value: Y
+.RE
+.SS "Advanced section"
+.PP
+\fB\-edam\fR \fIboolean\fR
+.RS 4
+Default value: $(full)
+.RE
+.PP
+\fB\-type\fR \fIboolean\fR
+.RS 4
+Default value: $(full)
+.RE
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+Default value: stdout
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+showdball is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/showfeat.1e b/debian/manpages/showfeat.1e
index 3f24147..73effc6 100644
--- a/debian/manpages/showfeat.1e
+++ b/debian/manpages/showfeat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SHOWFEAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SHOWFEAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SHOWFEAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ Tags are the types of extra values that a feature may have\&. For example in the
.PP
\fB\-valuematch\fR \fIstring\fR
.RS 4
-Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. For example in the EMBL feature table, a \'CDS\' type of feature may have the tags \'/codon\', \'/codon_start\', \'/db_xref\', \'/EC_number\', \'/evidence\', \'/exception\', \'/function\', \'/gene\', \'/label\', \'/map\', \'/note\', \'/number\', \'/partial\', \'/product\', \'/protein_id\', \'/pseudo\', \'/standard_name\', \'/translation\', \'/transl_except\', \'/transl_table\', or \'/usedin\'\&. Only some of these tags can have values, for example \'/gene\' can have the value of the gene name\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag valueyou wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with the character \'|\', eg: pax* | 10 Default value: *
+Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. For example in the EMBL feature table, a \'CDS\' type of feature may have the tags \'/codon\', \'/codon_start\', \'/db_xref\', \'/EC_number\', \'/evidence\', \'/exception\', \'/function\', \'/gene\', \'/label\', \'/map\', \'/note\', \'/number\', \'/partial\', \'/product\', \'/protein_id\', \'/pseudo\', \'/standard_name\', \'/translation\', \'/transl_except\', \'/transl_table\', or \'/usedin\'\&. Only some of these tags can have values, for example \'/gene\' can have the value of the gene name\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag value you wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with the character \'|\', eg: pax* | 10 Default value: *
.RE
.PP
\fB\-sort\fR \fIlist\fR
@@ -167,7 +167,7 @@ showfeat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/showorf.1e b/debian/manpages/showorf.1e
index d187bee..0d487b8 100644
--- a/debian/manpages/showorf.1e
+++ b/debian/manpages/showorf.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SHOWORF
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SHOWORF" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SHOWORF" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -81,7 +81,7 @@ showorf is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/showpep.1e b/debian/manpages/showpep.1e
index 814c097..33a9903 100644
--- a/debian/manpages/showpep.1e
+++ b/debian/manpages/showpep.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SHOWPEP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SHOWPEP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SHOWPEP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -91,7 +91,7 @@ Tags are the types of extra values that a feature may have\&. By default any fea
.PP
\fB\-valuematch\fR \fIstring\fR
.RS 4
-Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag valueyou wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with the character \'|\', eg: pax* | 10 Default value: *
+Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag value you wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with the character \'|\', eg: pax* | 10 Default value: *
.RE
.PP
\fB\-stricttags\fR \fIboolean\fR
@@ -158,7 +158,7 @@ showpep is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/showseq.1e b/debian/manpages/showseq.1e
index 03adbb9..4b7cb49 100644
--- a/debian/manpages/showseq.1e
+++ b/debian/manpages/showseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SHOWSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SHOWSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SHOWSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -120,7 +120,7 @@ Tags are the types of extra values that a feature may have\&. For example in the
.PP
\fB\-valuematch\fR \fIstring\fR
.RS 4
-Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. For example in the EMBL feature table, a \'CDS\' type of feature may have the tags \'/codon\', \'/codon_start\', \'/db_xref\', \'/EC_number\', \'/evidence\', \'/exception\', \'/function\', \'/gene\', \'/label\', \'/map\', \'/note\', \'/number\', \'/partial\', \'/product\', \'/protein_id\', \'/pseudo\', \'/standard_name\', \'/translation\', \'/transl_except\', \'/transl_table\', or \'/usedin\'\&. Only some of these tags can have values, for example \'/gene\' can have the value of the gene name\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag valueyou wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with the character \'|\', eg: pax* | 10 Default value: *
+Tag values are the values associated with a feature tag\&. Tags are the types of extra values that a feature may have\&. For example in the EMBL feature table, a \'CDS\' type of feature may have the tags \'/codon\', \'/codon_start\', \'/db_xref\', \'/EC_number\', \'/evidence\', \'/exception\', \'/function\', \'/gene\', \'/label\', \'/map\', \'/note\', \'/number\', \'/partial\', \'/product\', \'/protein_id\', \'/pseudo\', \'/standard_name\', \'/translation\', \'/transl_except\', \'/transl_table\', or \'/usedin\'\&. Only some of these tags can have values, for example \'/gene\' can have the value of the gene name\&. By default any feature tag value in the feature table is shown\&. You can set this to match any feature tag value you wish to show\&. The tag value may be wildcarded by using \'*\'\&. If you wish to show more than one tag value, separate their names with the character \'|\', eg: pax* | 10 Default value: *
.RE
.PP
\fB\-stricttags\fR \fIboolean\fR
@@ -172,7 +172,7 @@ This allows those enzymes which have one or more \'N\' ambiguity codes in their
.PP
\fB\-plasmid\fR \fIboolean\fR
.RS 4
-If this is set then this allows searches for restriction enzyme recognition site and cut postions that span the end of the sequence to be considered\&. Default value: N
+If this is set then this allows searches for restriction enzyme recognition site and cut positions that span the end of the sequence to be considered\&. Default value: N
.RE
.PP
\fB\-methylation\fR \fIboolean\fR
@@ -253,7 +253,7 @@ showseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/shuffleseq.1e b/debian/manpages/shuffleseq.1e
index c39839a..bcc8312 100644
--- a/debian/manpages/shuffleseq.1e
+++ b/debian/manpages/shuffleseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SHUFFLESEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SHUFFLESEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SHUFFLESEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ shuffleseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/sigcleave.1e b/debian/manpages/sigcleave.1e
index 2be0ef5..e777061 100644
--- a/debian/manpages/sigcleave.1e
+++ b/debian/manpages/sigcleave.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SIGCLEAVE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SIGCLEAVE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SIGCLEAVE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -62,7 +62,7 @@ sigcleave is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/silent.1e b/debian/manpages/silent.1e
index d585fad..bc73e47 100644
--- a/debian/manpages/silent.1e
+++ b/debian/manpages/silent.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SILENT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SILENT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SILENT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -71,7 +71,7 @@ silent is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/sirna.1e b/debian/manpages/sirna.1e
index 9628038..d84a9e1 100644
--- a/debian/manpages/sirna.1e
+++ b/debian/manpages/sirna.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SIRNA
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SIRNA" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SIRNA" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ If this option is FALSE then only those 23 base regions that have no repeat of 4
.PP
\fB\-outfile\fR \fIreport\fR
.RS 4
-The output is a table of the forward and reverse parts of the 21 base siRNA duplex\&. Both the forward and reverse sequences are written 5\' to 3\', ready to be ordered\&. The last two bases have been replaced by \'dTdT\'\&. The starting position of the 23 base region and the %GC content is also given\&. If you wish to see the complete 23 base sequence, then either look at the sequence in the other output file, or use the qualifier \'\-context\' which will display the 23 bases of the forward sequence in this report withthe first two bases in brackets\&. These first two bases do not form part of the siRNA probe to be ordered\&.
+The output is a table of the forward and reverse parts of the 21 base siRNA duplex\&. Both the forward and reverse sequences are written 5\' to 3\', ready to be ordered\&. The last two bases have been replaced by \'dTdT\'\&. The starting position of the 23 base region and the %GC content is also given\&. If you wish to see the complete 23 base sequence, then either look at the sequence in the other output file, or use the qualifier \'\-context\' which will display the 23 bases of the forward sequence in this report with the first two bases in brackets\&. These first two bases do not form part of the siRNA probe to be ordered\&.
.RE
.PP
\fB\-outseq\fR \fIseqoutall\fR
@@ -82,7 +82,7 @@ sirna is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/sixpack.1e b/debian/manpages/sixpack.1e
index d3f0d2b..fc8c0c2 100644
--- a/debian/manpages/sixpack.1e
+++ b/debian/manpages/sixpack.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SIXPACK
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SIXPACK" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SIXPACK" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -135,7 +135,7 @@ sixpack is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/sizeseq.1e b/debian/manpages/sizeseq.1e
index 42c0ec2..afec3c3 100644
--- a/debian/manpages/sizeseq.1e
+++ b/debian/manpages/sizeseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SIZESEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SIZESEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SIZESEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -63,7 +63,7 @@ sizeseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/skipredundant.1e b/debian/manpages/skipredundant.1e
index 86fc602..a72c6ee 100644
--- a/debian/manpages/skipredundant.1e
+++ b/debian/manpages/skipredundant.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SKIPREDUNDANT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SKIPREDUNDANT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SKIPREDUNDANT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -96,7 +96,7 @@ skipredundant is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/skipseq.1e b/debian/manpages/skipseq.1e
index bb8f3d9..e0532d1 100644
--- a/debian/manpages/skipseq.1e
+++ b/debian/manpages/skipseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SKIPSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SKIPSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SKIPSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -58,7 +58,7 @@ skipseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/splitsource.1e b/debian/manpages/splitsource.1e
index 81fb117..f6b196e 100644
--- a/debian/manpages/splitsource.1e
+++ b/debian/manpages/splitsource.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SPLITSOURCE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SPLITSOURCE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SPLITSOURCE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -57,7 +57,7 @@ splitsource is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/splitter.1e b/debian/manpages/splitter.1e
index a5580d0..6d52cb0 100644
--- a/debian/manpages/splitter.1e
+++ b/debian/manpages/splitter.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SPLITTER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SPLITTER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SPLITTER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -71,7 +71,7 @@ splitter is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/sqltest.1e b/debian/manpages/sqltest.1e
new file mode 100644
index 0000000..f54f72f
--- /dev/null
+++ b/debian/manpages/sqltest.1e
@@ -0,0 +1,57 @@
+'\" t
+.\" Title: SQLTEST
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
+.\" Manual: EMBOSS Manual for Debian
+.\" Source: EMBOSS 6.2.0
+.\" Language: English
+.\"
+.TH "SQLTEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
+.\" -----------------------------------------------------------------
+.\" * set default formatting
+.\" -----------------------------------------------------------------
+.\" disable hyphenation
+.nh
+.\" disable justification (adjust text to left margin only)
+.ad l
+.\" -----------------------------------------------------------------
+.\" * MAIN CONTENT STARTS HERE *
+.\" -----------------------------------------------------------------
+.SH "NAME"
+sqltest \- Demonstration of SQL server access
+.SH "SYNOPSIS"
+.HP \w'\fBsqltest\fR\ 'u
+\fBsqltest\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
+.HP \w'\fBsqltest\fR\ 'u
+\fBsqltest\fR \fB\-help\fR
+.SH "DESCRIPTION"
+.PP
+\fBsqltest\fR
+is a command line program from EMBOSS (\(lqthe European Molecular Biology Open Software Suite\(rq)\&. It is part of the "Test" command group(s)\&.
+.SH "OPTIONS"
+.SS "Input section"
+.SS "Output section"
+.PP
+\fB\-outfile\fR \fIoutfile\fR
+.RS 4
+.RE
+.SH "BUGS"
+.PP
+Bugs can be reported to the Debian Bug Tracking system (http://bugs\&.debian\&.org/emboss), or directly to the EMBOSS developers (http://sourceforge\&.net/tracker/?group_id=93650&atid=605031)\&.
+.SH "SEE ALSO"
+.PP
+sqltest is fully documented via the
+\fBtfm\fR(1)
+system\&.
+.SH "AUTHOR"
+.PP
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+.RS 4
+Wrote the script used to autogenerate this manual page\&.
+.RE
+.SH "COPYRIGHT"
+.br
+.PP
+This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package\&. It can be redistributed under the same terms as EMBOSS itself\&.
+.sp
diff --git a/debian/manpages/stretcher.1e b/debian/manpages/stretcher.1e
index 9b5d802..f615c62 100644
--- a/debian/manpages/stretcher.1e
+++ b/debian/manpages/stretcher.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: STRETCHER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "STRETCHER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "STRETCHER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ stretcher is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/stssearch.1e b/debian/manpages/stssearch.1e
index 801b2d4..e1d00fd 100644
--- a/debian/manpages/stssearch.1e
+++ b/debian/manpages/stssearch.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: STSSEARCH
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "STSSEARCH" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "STSSEARCH" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -54,7 +54,7 @@ stssearch is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/supermatcher.1e b/debian/manpages/supermatcher.1e
index 0cd89aa..901be92 100644
--- a/debian/manpages/supermatcher.1e
+++ b/debian/manpages/supermatcher.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SUPERMATCHER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SUPERMATCHER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SUPERMATCHER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -86,7 +86,7 @@ supermatcher is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/syco.1e b/debian/manpages/syco.1e
index f52c94a..af6b17c 100644
--- a/debian/manpages/syco.1e
+++ b/debian/manpages/syco.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: SYCO
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "SYCO" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "SYCO" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -19,7 +19,7 @@
.\" * MAIN CONTENT STARTS HERE *
.\" -----------------------------------------------------------------
.SH "NAME"
-syco \- Draw synonymous codon usage statictic plot for a nucleotide sequence
+syco \- Draw synonymous codon usage statistic plot for a nucleotide sequence
.SH "SYNOPSIS"
.HP \w'\fBsyco\fR\ 'u
\fBsyco\fR \fB\-sequence\ \fR\fB\fIsequence\fR\fR \fB\-cfile\ \fR\fB\fIcodon\fR\fR \fB\-window\ \fR\fB\fIinteger\fR\fR \fB\-uncommon\ \fR\fB\fIboolean\fR\fR \fB\-minimum\ \fR\fB\fIfloat\fR\fR \fB\-plot\ \fR\fB\fItoggle\fR\fR \fB\-graph\ \fR\fB\fIxygraph\fR\fR \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
@@ -80,7 +80,7 @@ syco is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/tcode.1e b/debian/manpages/tcode.1e
index 5800bb3..4d4781c 100644
--- a/debian/manpages/tcode.1e
+++ b/debian/manpages/tcode.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TCODE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TCODE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TCODE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -76,7 +76,7 @@ tcode is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/testplot.1e b/debian/manpages/testplot.1e
index ee2ddce..45fd41b 100644
--- a/debian/manpages/testplot.1e
+++ b/debian/manpages/testplot.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TESTPLOT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TESTPLOT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TESTPLOT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -56,7 +56,7 @@ testplot is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/textsearch.1e b/debian/manpages/textsearch.1e
index 0397a22..eb7030e 100644
--- a/debian/manpages/textsearch.1e
+++ b/debian/manpages/textsearch.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TEXTSEARCH
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TEXTSEARCH" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TEXTSEARCH" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -97,7 +97,7 @@ textsearch is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/tfextract.1e b/debian/manpages/tfextract.1e
index ae220d0..7c46860 100644
--- a/debian/manpages/tfextract.1e
+++ b/debian/manpages/tfextract.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TFEXTRACT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TFEXTRACT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TFEXTRACT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -45,7 +45,7 @@ tfextract is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/tfm.1e b/debian/manpages/tfm.1e
index e6e9dc7..3ed600a 100644
--- a/debian/manpages/tfm.1e
+++ b/debian/manpages/tfm.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TFM
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TFM" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TFM" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -62,7 +62,7 @@ tfm is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/tfscan.1e b/debian/manpages/tfscan.1e
index 859cd23..3304949 100644
--- a/debian/manpages/tfscan.1e
+++ b/debian/manpages/tfscan.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TFSCAN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TFSCAN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TFSCAN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ tfscan is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/tmap.1e b/debian/manpages/tmap.1e
index 5e0134f..612da82 100644
--- a/debian/manpages/tmap.1e
+++ b/debian/manpages/tmap.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TMAP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TMAP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TMAP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ tmap is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/tranalign.1e b/debian/manpages/tranalign.1e
index 14602aa..9b33be9 100644
--- a/debian/manpages/tranalign.1e
+++ b/debian/manpages/tranalign.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TRANALIGN
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TRANALIGN" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TRANALIGN" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -59,7 +59,7 @@ tranalign is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/transeq.1e b/debian/manpages/transeq.1e
index ad6cf15..7b8d43c 100644
--- a/debian/manpages/transeq.1e
+++ b/debian/manpages/transeq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TRANSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TRANSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TRANSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -81,7 +81,7 @@ transeq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/treetypedisplay.1e b/debian/manpages/treetypedisplay.1e
index 1613fea..181d57c 100644
--- a/debian/manpages/treetypedisplay.1e
+++ b/debian/manpages/treetypedisplay.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TREETYPEDISPLAY
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TREETYPEDISPLAY" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TREETYPEDISPLAY" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -45,7 +45,7 @@ treetypedisplay is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/trimest.1e b/debian/manpages/trimest.1e
index 44b3d56..4e776b7 100644
--- a/debian/manpages/trimest.1e
+++ b/debian/manpages/trimest.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TRIMEST
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TRIMEST" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TRIMEST" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ The poly\-A region can be \'masked\' by converting the sequence characters to lo
.PP
\fB\-fiveprime\fR \fIboolean\fR
.RS 4
-If this is set true, then the 5\' end of teh sequence is inspected for poly\-T tails\&. These will be removed if they are longer than any 3\' poly\-A tails\&. If this is false, then the 5\' end is ignored\&. Default value: Y
+If this is set true, then the 5\' end of the sequence is inspected for poly\-T tails\&. These will be removed if they are longer than any 3\' poly\-A tails\&. If this is false, then the 5\' end is ignored\&. Default value: Y
.RE
.SS "Output section"
.PP
@@ -77,7 +77,7 @@ trimest is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/trimseq.1e b/debian/manpages/trimseq.1e
index 261699a..1d46ebf 100644
--- a/debian/manpages/trimseq.1e
+++ b/debian/manpages/trimseq.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TRIMSEQ
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TRIMSEQ" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TRIMSEQ" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -82,7 +82,7 @@ trimseq is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/trimspace.1e b/debian/manpages/trimspace.1e
index 3b6e13f..6688cb7 100644
--- a/debian/manpages/trimspace.1e
+++ b/debian/manpages/trimspace.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TRIMSPACE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TRIMSPACE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TRIMSPACE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -53,7 +53,7 @@ trimspace is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/twofeat.1e b/debian/manpages/twofeat.1e
index c747401..a0dab08 100644
--- a/debian/manpages/twofeat.1e
+++ b/debian/manpages/twofeat.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: TWOFEAT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "TWOFEAT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "TWOFEAT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -163,7 +163,7 @@ twofeat is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/union.1e b/debian/manpages/union.1e
index a3fbc68..fc6220d 100644
--- a/debian/manpages/union.1e
+++ b/debian/manpages/union.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: UNION
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "UNION" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "UNION" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -70,7 +70,7 @@ union is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/vectorstrip.1e b/debian/manpages/vectorstrip.1e
index 4bc9380..b8d3d2b 100644
--- a/debian/manpages/vectorstrip.1e
+++ b/debian/manpages/vectorstrip.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: VECTORSTRIP
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "VECTORSTRIP" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "VECTORSTRIP" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -88,7 +88,7 @@ vectorstrip is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/water.1e b/debian/manpages/water.1e
index 379ef11..0849262 100644
--- a/debian/manpages/water.1e
+++ b/debian/manpages/water.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: WATER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "WATER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "WATER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -75,7 +75,7 @@ water is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/whichdb.1e b/debian/manpages/whichdb.1e
index dc72b29..ab9eb4c 100644
--- a/debian/manpages/whichdb.1e
+++ b/debian/manpages/whichdb.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: WHICHDB
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "WHICHDB" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "WHICHDB" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -60,7 +60,7 @@ whichdb is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/wobble.1e b/debian/manpages/wobble.1e
index 73a078d..8954e30 100644
--- a/debian/manpages/wobble.1e
+++ b/debian/manpages/wobble.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: WOBBLE
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "WOBBLE" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "WOBBLE" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -66,7 +66,7 @@ wobble is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/wordcount.1e b/debian/manpages/wordcount.1e
index 81963e0..d660503 100644
--- a/debian/manpages/wordcount.1e
+++ b/debian/manpages/wordcount.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: WORDCOUNT
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "WORDCOUNT" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "WORDCOUNT" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -19,7 +19,7 @@
.\" * MAIN CONTENT STARTS HERE *
.\" -----------------------------------------------------------------
.SH "NAME"
-wordcount \- Count and extract unique words in DNA sequence(s)
+wordcount \- Count and extract unique words in molecular sequence(s)
.SH "SYNOPSIS"
.HP \w'\fBwordcount\fR\ 'u
\fBwordcount\fR \fB\-sequence\ \fR\fB\fIseqall\fR\fR \fB\-wordsize\ \fR\fB\fIinteger\fR\fR [\fB\-mincount\ \fR\fB\fIinteger\fR\fR] \fB\-outfile\ \fR\fB\fIoutfile\fR\fR
@@ -62,7 +62,7 @@ wordcount is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/wordfinder.1e b/debian/manpages/wordfinder.1e
index 03887d6..1d958c4 100644
--- a/debian/manpages/wordfinder.1e
+++ b/debian/manpages/wordfinder.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: WORDFINDER
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "WORDFINDER" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "WORDFINDER" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -102,7 +102,7 @@ wordfinder is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/wordmatch.1e b/debian/manpages/wordmatch.1e
index a3f63f1..77479a8 100644
--- a/debian/manpages/wordmatch.1e
+++ b/debian/manpages/wordmatch.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: WORDMATCH
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "WORDMATCH" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "WORDMATCH" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -22,7 +22,7 @@
wordmatch \- Finds regions of identity (exact matches) of two sequences
.SH "SYNOPSIS"
.HP \w'\fBwordmatch\fR\ 'u
-\fBwordmatch\fR \fB\-asequence\ \fR\fB\fIsequence\fR\fR \fB\-bsequence\ \fR\fB\fIsequence\fR\fR \fB\-wordsize\ \fR\fB\fIinteger\fR\fR \fB\-outfile\ \fR\fB\fIalign\fR\fR \fB\-aoutfeat\ \fR\fB\fIfeatout\fR\fR \fB\-boutfeat\ \fR\fB\fIfeatout\fR\fR
+\fBwordmatch\fR \fB\-asequence\ \fR\fB\fIseqset\fR\fR \fB\-bsequence\ \fR\fB\fIseqall\fR\fR \fB\-wordsize\ \fR\fB\fIinteger\fR\fR [\fB\-dumpalign\ \fR\fB\fItoggle\fR\fR] \fB\-outfile\ \fR\fB\fIalign\fR\fR [\fB\-logfile\ \fR\fB\fIoutfile\fR\fR] [\fB\-dumpfeat\ \fR\fB\fItoggle\fR\fR] \fB\-aoutfeat\ \fR\fB\fIfeatout\fR\fR \fB\-boutfeat\ \fR\fB\fIfeatout\fR\fR
.HP \w'\fBwordmatch\fR\ 'u
\fBwordmatch\fR \fB\-help\fR
.SH "DESCRIPTION"
@@ -32,11 +32,11 @@ is a command line program from EMBOSS (\(lqthe European Molecular Biology Open S
.SH "OPTIONS"
.SS "Input section"
.PP
-\fB\-asequence\fR \fIsequence\fR
+\fB\-asequence\fR \fIseqset\fR
.RS 4
.RE
.PP
-\fB\-bsequence\fR \fIsequence\fR
+\fB\-bsequence\fR \fIseqall\fR
.RS 4
.RE
.SS "Required section"
@@ -47,10 +47,25 @@ Default value: 4
.RE
.SS "Output section"
.PP
+\fB\-dumpalign\fR \fItoggle\fR
+.RS 4
+Default value: Y
+.RE
+.PP
\fB\-outfile\fR \fIalign\fR
.RS 4
.RE
.PP
+\fB\-logfile\fR \fIoutfile\fR
+.RS 4
+Log file reports statistics on kmer frequency distribution and number of matches in the seqall sequences for each sequence in the seqset Default value: wordmatch\&.log
+.RE
+.PP
+\fB\-dumpfeat\fR \fItoggle\fR
+.RS 4
+Default value: Y
+.RE
+.PP
\fB\-aoutfeat\fR \fIfeatout\fR
.RS 4
.RE
@@ -68,7 +83,7 @@ wordmatch is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/wossname.1e b/debian/manpages/wossname.1e
index 50a3747..76b908c 100644
--- a/debian/manpages/wossname.1e
+++ b/debian/manpages/wossname.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: WOSSNAME
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "WOSSNAME" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "WOSSNAME" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -110,7 +110,7 @@ wossname is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
diff --git a/debian/manpages/yank.1e b/debian/manpages/yank.1e
index 89a0026..c43ff34 100644
--- a/debian/manpages/yank.1e
+++ b/debian/manpages/yank.1e
@@ -1,13 +1,13 @@
'\" t
.\" Title: YANK
-.\" Author: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-.\" Generator: DocBook XSL Stylesheets v1.75.1 <http://docbook.sf.net/>
-.\" Date: 07/15/2009
+.\" Author: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+.\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/>
+.\" Date: 02/22/2010
.\" Manual: EMBOSS Manual for Debian
-.\" Source: EMBOSS 6.1.0
+.\" Source: EMBOSS 6.2.0
.\" Language: English
.\"
-.TH "YANK" "1e" "07/15/2009" "EMBOSS 6.1.0" "EMBOSS Manual for Debian"
+.TH "YANK" "1e" "02/22/2010" "EMBOSS 6.2.0" "EMBOSS Manual for Debian"
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
@@ -55,7 +55,7 @@ yank is fully documented via the
system\&.
.SH "AUTHOR"
.PP
-\fBDebian\-Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
+\fBDebian Med Packaging Team\fR <\&debian\-med\-packaging at lists\&.alioth\&.debian\&.org\&>
.RS 4
Wrote the script used to autogenerate this manual page\&.
.RE
--
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