[Debian-med-packaging] [SCM] picard-tools branch, master, updated. upstream/1.25-18-ga7de4f0

[Shaun Jackman]

The following commit has been merged in the master branch:
commit a7de4f03079d1f6e8ea62b9ebe033aa4d30b10d5
Author: Shaun Jackman <sjackman at debian.org>
Date:   Tue Jul 6 16:44:27 2010 -0700

    * debian/bin/picard-tools: Add java -XX:MaxPermSize=256m to avoid the
    error:
    Exception in thread "main" java.lang.OutOfMemoryError: PermGen space
    at java.lang.String.intern(Native Method)

diff --git a/debian/bin/picard-tools b/debian/bin/picard-tools
index 930a00e..0840841 100755
--- a/debian/bin/picard-tools
+++ b/debian/bin/picard-tools
@@ -57,4 +57,4 @@ EOF
 esac
 
 p=/usr/share/java
-exec java -cp $p/picard.jar:$p/sam.jar $main "$@"
+exec java -XX:MaxPermSize=256m -cp $p/picard.jar:$p/sam.jar $main "$@"

-- 
manipulate SAM and BAM files