[Debian-med-packaging] [SCM] gmap branch, master, updated. upstream/2010-07-20-11-g41bd4a0

[Shaun Jackman]

The following commit has been merged in the master branch:
commit 41bd4a0d7c45e478d161d929c08233a6c8a9bced
Author: Shaun Jackman <sjackman at debian.org>
Date:   Thu Jul 22 11:47:13 2010 -0700

    * debian/gmap.1: Add -f4.

diff --git a/debian/gmap.1 b/debian/gmap.1
index b69cfb1..9eeea13 100644
--- a/debian/gmap.1
+++ b/debian/gmap.1
@@ -107,7 +107,8 @@ Print protein sequence (genomic)
 Format for output
  1 = PSL (BLAT) format,
  2 = GFF3 gene format,
- 3 = GFF3 match format,
+ 3 = GFF3 cDNA_match format,
+ 4 = GFF3 EST_match format,
  6 = splicesites output (for GSNAP),
  7 = IIT FASTA exon map format,
  8 = IIT FASTA map format,

-- 
Align mRNA and EST sequences to a genome