No subject


Sat Jul 3 11:09:00 UTC 2010


[...]
dpkg-source: extracting libbio-scf-perl in libbio-scf-perl-1.01
dpkg-source: info: unpacking libbio-scf-perl_1.01.orig.tar.gz
dpkg-source: info: applying libbio-scf-perl_1.01-1.diff.gz
dpkg-buildpackage: set CFLAGS to default value: -g -O2
dpkg-buildpackage: set CPPFLAGS to default value: 
dpkg-buildpackage: set LDFLAGS to default value: 
dpkg-buildpackage: set FFLAGS to default value: -g -O2
dpkg-buildpackage: set CXXFLAGS to default value: -g -O2
dpkg-buildpackage: source package libbio-scf-perl
dpkg-buildpackage: source version 1.01-1
dpkg-buildpackage: host architecture hppa
 /usr/bin/fakeroot debian/rules clean
dh --with quilt clean
   dh_testdir
   dh_auto_clean
   dh_quilt_unpatch
No patch removed
   dh_clean
 debian/rules build
dh --with quilt build
   dh_testdir
   dh_quilt_patch
Applying patch libread_renamed_libstaden-read.patch
patching file Makefile.PL

Now at patch libread_renamed_libstaden-read.patch
   dh_auto_configure
Checking if your kit is complete...
Looks good
'CREATE_PACKLIST' is not a known MakeMaker parameter name.
Writing Makefile for Bio::SCF
   dh_auto_build
make[1]: Entering directory `/build/buildd/libbio-scf-perl-1.01'
cp SCF.pm blib/lib/Bio/SCF.pm
cp SCF/Arrays.pm blib/lib/Bio/SCF/Arrays.pm
/usr/bin/perl /usr/share/perl/5.10/ExtUtils/xsubpp  -typemap /usr/share/perl/5.10/ExtUtils/typemap  SCF.xs > SCF.xsc && mv SCF.xsc SCF.c
Please specify prototyping behavior for SCF.xs (see perlxs manual)
cc -c   -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g   -DVERSION=\"1.01\" -DXS_VERSION=\"1.01\" -fPIC "-I/usr/lib/perl/5.10/CORE"  -DLITTLE_ENDIAN SCF.c
In file included from /usr/include/io_lib/scf.h:32,
                 from SCF.xs:12:
/usr/include/io_lib/os.h:269:6: error: #error Neither BIG nor LITTLE endian defined. Fix os.h and/or Makefile
make[1]: *** [SCF.o] Error 1
make[1]: Leaving directory `/build/buildd/libbio-scf-perl-1.01'
dh_auto_build: make -j1 returned exit code 2
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2



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Received: (at 579239-close) by bugs.debian.org; 27 Jul 2010 13:32:11 +0000
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From: Charles Plessy <plessy at debian.org>
To: 579239-close at bugs.debian.org
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Subject: Bug#579239: fixed in staden-io-lib 1.12.4-1
Message-Id: <E1OdkGO-0001fF-Pr at franck.debian.org>
Sender: Archive Administrator <dak at franck.debian.org>
Date: Tue, 27 Jul 2010 13:32:08 +0000

Source: staden-io-lib
Source-Version: 1.12.4-1

We believe that the bug you reported is fixed in the latest version of
staden-io-lib, which is due to be installed in the Debian FTP archive:

libstaden-read-dev_1.12.4-1_amd64.deb
  to main/s/staden-io-lib/libstaden-read-dev_1.12.4-1_amd64.deb
libstaden-read1_1.12.4-1_amd64.deb
  to main/s/staden-io-lib/libstaden-read1_1.12.4-1_amd64.deb
staden-io-lib-utils_1.12.4-1_amd64.deb
  to main/s/staden-io-lib/staden-io-lib-utils_1.12.4-1_amd64.deb
staden-io-lib_1.12.4-1.diff.gz
  to main/s/staden-io-lib/staden-io-lib_1.12.4-1.diff.gz
staden-io-lib_1.12.4-1.dsc
  to main/s/staden-io-lib/staden-io-lib_1.12.4-1.dsc
staden-io-lib_1.12.4.orig.tar.gz
  to main/s/staden-io-lib/staden-io-lib_1.12.4.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 579239 at bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy at debian.org> (supplier of updated staden-io-lib package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster at debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Tue, 27 Jul 2010 21:07:57 +0900
Source: staden-io-lib
Binary: staden-io-lib-utils libstaden-read-dev libstaden-read1
Architecture: source amd64
Version: 1.12.4-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description: 
 libstaden-read-dev - development files for libstaden-read
 libstaden-read1 - Staden library for reading and writing DNA sequencing results
 staden-io-lib-utils - programs for maniuplating DNA sequencing files
Closes: 579239
Changes: 
 staden-io-lib (1.12.4-1) unstable; urgency=low
 .
   * New upstream release, with changes on endianness detection
     (closes: #579239).
   * Build on all architectures, (debian/control).
   * Added library symbols file (debian/libstaden-read1.symbols).
   * Incremented Standards-Version to reflect conformance with Policy 3.9.1
     (debian/control, no changes needed).
   * Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev
     (debian/rules, debian/control).
Checksums-Sha1: 
 4d226e4a2fb1330defc463529fbbaf3c9ce7f211 1400 staden-io-lib_1.12.4-1.dsc
 fc2e079b19b091e5b4950d349cda82d07bf7315f 779771 staden-io-lib_1.12.4.orig.tar.gz
 bb104f7d6df4bced73b13360640c63ad6e46699a 5808 staden-io-lib_1.12.4-1.diff.gz
 6d32038ce46d00e7ea252760bcc7e5a5e91c1011 173894 staden-io-lib-utils_1.12.4-1_amd64.deb
 998f9097abb68dfd52e575d86f0ba7e5f7d9c14f 191934 libstaden-read-dev_1.12.4-1_amd64.deb
 208dd6661331c8596e5191f1f8d63f3576b60d38 143144 libstaden-read1_1.12.4-1_amd64.deb
Checksums-Sha256: 
 ba20220fbe9cea739748079b06a2532257c965229db36b5eb5d3f8ae3e688f32 1400 staden-io-lib_1.12.4-1.dsc
 8b6261fb2b6b1cca0dd05af4ac7734d289c56193ce68c859e6aca71caad1ea21 779771 staden-io-lib_1.12.4.orig.tar.gz
 9a34ca8099df1488c850b3a9b3ce46a6c63f925541189c4f43140d2edd8dbfb1 5808 staden-io-lib_1.12.4-1.diff.gz
 5a26a8041c0ac1733a88c0ae5cc7fd6c4040493416571adc3576d0c7b4b382b8 173894 staden-io-lib-utils_1.12.4-1_amd64.deb
 d492108c56179aee0ffe773bdf73314b10129638cd2d91df529d8997d9cb1a8d 191934 libstaden-read-dev_1.12.4-1_amd64.deb
 f1335632b435d9e328f8f96943a10af127b7b70be79fa6947945b60228268b1f 143144 libstaden-read1_1.12.4-1_amd64.deb
Files: 
 7cdbb48e276645956622f353ae1c7444 1400 science optional staden-io-lib_1.12.4-1.dsc
 b8f98795a85e4794da8cafe74edc13d8 779771 science optional staden-io-lib_1.12.4.orig.tar.gz
 d2124144899bb52178607f284fd20471 5808 science optional staden-io-lib_1.12.4-1.diff.gz
 affd582ef7769b637959d7b38cf6bf72 173894 science optional staden-io-lib-utils_1.12.4-1_amd64.deb
 41d8d49c85192b78bd615d73f1179164 191934 libdevel optional libstaden-read-dev_1.12.4-1_amd64.deb
 7647fd4dd6173b742fd09c96f94da7cc 143144 libs optional libstaden-read1_1.12.4-1_amd64.deb

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