[Debian-med-packaging] [SCM] picard-tools branch, master, updated. upstream/1.23-5-gf6241be

[Charles Plessy]

The following commit has been merged in the master branch:
commit f6241be1f23d1f51b06d9667a19b6640cfcc9267
Author: Charles Plessy <plessy at debian.org>
Date:   Wed Jun 23 17:23:07 2010 +0900

    Found GPL and “All rights reserved” upstream files.

diff --git a/debian/copyright b/debian/copyright
index f65387e..6b70009 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -76,6 +76,37 @@ License: W3C-Software
  permission. Title to copyright in this software and any associated
  documentation will at all times remain with copyright holders.
 
+Files: src/java/net/sf/samtools/util/SeekableStream.java
+Copyright: 2007-2009 the Broad Institute/Massachusetts Institute of Technology
+License: GPL-2
+ This is copyright (2007-2009) by the Broad Institute/Massachusetts Institute
+ of Technology.  It is licensed to You under the Gnu Public License, Version 2.0
+ (the "License"); you may not use this file except in compliance with
+  the License.  You may obtain a copy of the License at
+ .
+    http://www.opensource.org/licenses/gpl-2.0.php
+ .
+ This software is supplied without any warranty or guaranteed support
+ whatsoever. Neither the Broad Institute nor MIT can be responsible for its
+ use, misuse, or functionality.
+Comment: On Debian systems, the complete text of the GNU General Public License
+ version 2 is available in the file ‘/usr/share/common-licenses/GPL-2’.
+
+Files: src/scripts/release_picard.sh, src/scripts/explain_sam_flags.py, src/java/net/sf/samtools/apps/TimeRandomAccessFile.java, src/java/net/sf/samtools/apps/TimeChannel.java, src/java/net/sf/samtools/FixBAMFile.java
+Copyright: The Broad Institute/Massachusetts Institute of Technology
+License: all rights reserved
+ The Broad Institute
+ SOFTWARE COPYRIGHT NOTICE AGREEMENT
+ This software and its documentation are copyright 2006 by the
+ Broad Institute/Massachusetts Institute of Technology. All rights are
+ reserved.
+ .
+ This software is supplied without any warranty or guaranteed support
+ whatsoever. Neither the Broad Institute nor MIT can be responsible for its
+ use, misuse, or functionality.
+Comment: I thin that it is obvious that the authors forgot to add a MIT license
+ header on these files. -- Charles Plessy
+
 Files: debian/*
 Copyright: 2010 Shaun Jackman <sjackman at debian.org>
 License: ISC

-- 
manipulate SAM and BAM files