[Debian-med-packaging] Bug#587113: embassy-domalign: FTBFS: allversusall.c:91: undefined reference to `ajAcdGetDirlist'

[Lucas Nussbaum]

Source: embassy-domalign
Version: 0.1.0+20090715-1
Severity: serious
Tags: squeeze sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20100624 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"DOMALIGN\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I/usr/include -I/usr/include/eplplot  -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE  -DLENDIAN -DNO_AUTH  -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus  -O2  -D__amd64__ -c allversusall.c
> /bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus  -O2  -D__amd64__   -o allversusall allversusall.o -L/usr/lib -lnucleus -lajax -leplplot -lX11  -lm  -lgd -lpng -lz -lm
> libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -D__amd64__ -o allversusall allversusall.o  -L/usr/lib -lnucleus -lajax /usr/lib/libeplplot.so /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
> allversusall.o: In function `main':
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:91: undefined reference to `ajAcdGetDirlist'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:92: undefined reference to `ajAcdGetMatrixf'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:93: undefined reference to `ajAcdGetFloat'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:94: undefined reference to `ajAcdGetFloat'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:95: undefined reference to `ajAcdGetOutdir'
> /build/user-embassy-domalign_0.1.0+20090715-1-amd64-bLnk4e/embassy-domalign-0.1.0+20090715/src/allversusall.c:96: undefined reference to `ajAcdGetOutfile'
> /usr/lib/libnucleus.so: undefined reference to `ajAcdExit'
> /usr/lib/libajax.so: undefined reference to `epcre_compile'
> /usr/lib/libnucleus.so: undefined reference to `ajSeqdbInit'
> /usr/lib/libnucleus.so: undefined reference to `ajGraphicsExit'
> /usr/lib/libajax.so: undefined reference to `pcre_exec'
> /usr/lib/libnucleus.so: undefined reference to `ajAcdInitPV'
> /usr/lib/libnucleus.so: undefined reference to `ajAcdInit'
> /usr/lib/libnucleus.so: undefined reference to `ajSeqDbExit'
> collect2: ld returned 1 exit status

The full build log is available from:
   http://people.debian.org/~lucas/logs/2010/06/24/embassy-domalign_0.1.0+20090715-1_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |