[Debian-med-packaging] Bug#587170: [emboss] Emboss cannot be build twice in a row

[Peter Fritzsche]

Package: emboss
Severity: serious
Version: 6.2.0-2

The clean target doesn't seem to work as described in the policy.
Building it twice with debuild results in:

 dpkg-buildpackage -rfakeroot -D -us -uc
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): 
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): 
dpkg-buildpackage: source package emboss
dpkg-buildpackage: source version 6.2.0-2
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-buildpackage: host architecture amd64
 fakeroot debian/rules clean
QUILT_PATCHES=debian/patches \
		quilt --quiltrc /dev/null pop -a -R || test $? = 2
No patch removed
rm -rf .pc debian/stamp-patched
dh_testdir
dh_testroot
[ ! -f Makefile ] || /usr/bin/make distclean
find jemboss/ -type f -name "*.class" | xargs -r rm -f
rm --force --recursive debian/emboss_tmp
rm -f config.status install-stamp
# Temporary fix that may become unecessary in the future.
rm -f test/gb/Makefile test/wormpep/Makefile
cp debian/testembossrcbackup test/.embossrc
cp: cannot stat `debian/testembossrcbackup': No such file or directory
make: [clean] Error 1 (ignored)
dh_clean debian/copyright config.sub config.guess test-stamp
 dpkg-source -b emboss-6.2.0
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
dpkg-source: info: building emboss using existing emboss_6.2.0.orig.tar.gz
dpkg-source: info: building emboss in emboss_6.2.0-2.diff.gz
dpkg-source: warning: newly created empty file 'test/qa/emma-dna/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepinfo-plot1/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dbxgcg-allsys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxgcg-allsys-keep/embl.xid: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxgcg-allsys-keep/embl.xac: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxgcg-allsys-keep/embl.xkw: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxgcg-allsys-keep/embl.xsv: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxgcg-allsys-keep/embl.xde: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxgcg-allsys-keep/embl.xtx: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbxgcg-allsys-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/prettyplot-ex2/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dotpath-data/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dotpath-data/dotpath1.dat' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dotpath-data/stdin' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepwheel-data/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepwheel-data/pepwheel1.dat' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepwheel-data/stdin' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/des.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/acnum.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/acnum.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/seqvn.trg: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbiflat-swiss-allsys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/taxon.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/keyword.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/entrynam.idx: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/division.lkp: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/des.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/seqvn.hit: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/stderr has no final newline (either original or modified version)
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/keyword.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-swiss-allsys-keep/taxon.trg: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/prettyplot-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/remap-ex4/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/octanol-nodiff/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/codcopy-outstaden/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/codcopy-outstaden/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/align-needleall-noendweight/needleall.error' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/align-needleall-noendweight/stderr' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/jaspextract-keep/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/restrict-ex3/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dotpath-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dotpath-ex/stdin' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dbxfasta-allsys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxfasta-allsys-keep/emrod.xsv: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxfasta-allsys-keep/emrod.xac: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxfasta-allsys-keep/emrod.xde: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxfasta-allsys-keep/emrod.xid: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbxfasta-allsys-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/prosextract-keep/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/prosextract-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/plotorf-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/restrict-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dbxflat-ex-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-ex-keep/embl.xid: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-ex-keep/embl.xac: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbxflat-ex-keep/stderr has no final newline (either original or modified version)
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbigcg-pir-keep/acnum.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbigcg-pir-keep/acnum.hit: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbigcg-pir-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbigcg-pir-keep/entrynam.idx: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbigcg-pir-keep/division.lkp: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbigcg-pir-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/codcopy-outcut/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/codcopy-outcut/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/findkm-ex/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-nosys-keep/acnum.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-nosys-keep/acnum.hit: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbiblast-nosys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-nosys-keep/entrynam.idx: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-nosys-keep/division.lkp: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbiblast-nosys-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/chaos-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/chaos-ex/stdin' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/emma-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dbxflat-all-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-all-keep/embl.xid: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-all-keep/embl.xac: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-all-keep/embl.xkw: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-all-keep/embl.xsv: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-all-keep/embl.xde: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-all-keep/embl.xtx: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbxflat-all-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/codcopy-outcutgaa/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/codcopy-outcutgaa/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/restrict-nonpal/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/silent-seqs/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/silent-seqs/x65923.silent' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dottup-data/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dottup-data/dottup1.dat' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/plotcon-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/banana-ex2/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/banana-ex2/banana1.dat' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepinfo-plot2/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/align-needle-partrev/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/codcopy-outtransterm/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/codcopy-outtransterm/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/remap-ex2/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/align-needleall-withendweight/needleall.error' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/align-needleall-withendweight/stderr' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/dbxfasta-ex-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxfasta-ex-keep/emrod.xac: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxfasta-ex-keep/emrod.xid: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbxfasta-ex-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/seqret-query-srswww-acc/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/seqret-query-srswww-acc/stderr' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/seqret-query-srswww-acc/stdin' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepwindow-localdata/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepnet-ex/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/des.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/acnum.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/acnum.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/seqvn.trg: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbiblast-allsys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/entrynam.idx: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/division.lkp: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/des.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiblast-allsys-keep/seqvn.hit: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbiblast-allsys-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/printsextract-keep/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/printsextract-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/codcopy-outspsum/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/codcopy-outspsum/stderr has no final newline (either original or modified version)
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-swiss-keep/swnew.xac: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbxflat-swiss-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbxflat-swiss-keep/swnew.xid: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbxflat-swiss-keep/stderr has no final newline (either original or modified version)
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/des.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/acnum.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/acnum.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/seqvn.trg: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbiflat-embl-allsys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/taxon.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/keyword.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/entrynam.idx: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/division.lkp: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/des.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/seqvn.hit: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/stderr has no final newline (either original or modified version)
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/keyword.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allsys-keep/taxon.trg: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/restrict-ex2/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/cutgextract-outfile/outfile.cutgextract' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/cutgextract-outfile/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepwindow-local/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/rebaseextract-keep/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/rebaseextract-keep/stderr has no final newline (either original or modified version)
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/des.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/acnum.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/acnum.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/seqvn.trg: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbiflat-embl-allnosys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/taxon.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/keyword.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/entrynam.idx: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/division.lkp: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/des.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/seqvn.hit: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/stderr has no final newline (either original or modified version)
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/keyword.hit: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-embl-allnosys-keep/taxon.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-nosys-keep/acnum.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-nosys-keep/acnum.hit: binary file contents changed
dpkg-source: warning: newly created empty file 'test/qa/dbiflat-nosys-keep/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-nosys-keep/entrynam.idx: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbiflat-nosys-keep/division.lkp: binary file contents changed
dpkg-source: warning: file emboss-6.2.0/test/qa/dbiflat-nosys-keep/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/codcopy-outgcg/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/codcopy-outgcg/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/plotorf-ex2/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/cutgextract-keep/outfile.cutgextract' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/cutgextract-keep/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/seqret-query-srswww-name/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/seqret-query-srswww-name/stderr' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/seqret-query-srswww-name/stdin' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/recoder-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/recoder-ex/x65923.recoder' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/density-ex2/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/density-ex2/stdin' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/codcopy-outemboss/stdout' will not be represented in diff
dpkg-source: warning: file emboss-6.2.0/test/qa/codcopy-outemboss/stderr has no final newline (either original or modified version)
dpkg-source: warning: newly created empty file 'test/qa/abiview-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/abiview-ex/abiview.fasta' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/epestfind-ex/stdout' will not be represented in diff
dpkg-source: warning: newly created empty file 'test/qa/pepwheel-ex/stdout' will not be represented in diff
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbifasta-allsys-keep/des.trg: binary file contents changed
dpkg-source: error: cannot represent change to emboss-6.2.0/test/qa/dbifasta-allsys-keep/acnum.trg: binary file contents changed
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 test/qa/dbxflat-ex-keep/embl.ent
 test/qa/dbxflat-ex-keep/embl.pxac
 test/qa/dbxflat-ex-keep/embl.pxid
 test/qa/dbxflat-ex-keep/outfile.dbxflat
 test/qa/dbxflat-ex-keep/stderr
 test/qa/dbxflat-ex-keep/stdin
 test/qa/dbxflat-ex-keep/testdef
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 test/qa/dbxflat-swiss-keep/outfile.dbxflat
 test/qa/dbxflat-swiss-keep/stderr
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 test/qa/dbxflat-swiss-keep/swnew.ent
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 test/qa/ehmmemit-ex-keep/testdef
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 test/qa/ohmmalign-keep/testdef
 test/qa/ohmmbuild-ex-keep/testdef
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 test/qa/ohmmindex-keep/testdef
 test/qa/patmatmotifs-ex/opsd_human.patmatmotifs
 test/qa/patmatmotifs-ex/stderr
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 test/qa/pepinfo-ex/opsd_human.pepinfo
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 test/qa/pepinfo-plot1/opsd_human.pepinfo
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 test/qa/printsextract-keep/PRINTS/PR00005
 test/qa/printsextract-keep/PRINTS/PR00237
 test/qa/printsextract-keep/PRINTS/PR00279
 test/qa/printsextract-keep/PRINTS/PR00308
 test/qa/printsextract-keep/PRINTS/PR00656
 test/qa/printsextract-keep/PRINTS/PR00879
 test/qa/printsextract-keep/PRINTS/PR00936
 test/qa/printsextract-keep/PRINTS/prints.mat
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 test/qa/printsextract-keep/testlog
 test/qa/prosextract-keep/PROSITE/PS00237
 test/qa/prosextract-keep/PROSITE/PS00238
 test/qa/prosextract-keep/PROSITE/PS00649
 test/qa/prosextract-keep/PROSITE/PS00650
 test/qa/prosextract-keep/PROSITE/PS00979
 test/qa/prosextract-keep/PROSITE/PS00980
 test/qa/prosextract-keep/PROSITE/PS00981
 test/qa/prosextract-keep/PROSITE/prosite.lines
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 test/qa/qatest.cmd
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 test/qa/rebaseextract-keep/REBASE/embossre.ref
 test/qa/rebaseextract-keep/REBASE/embossre.sup
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 test/qa/seqret-query-srswww-acc/test.out
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 test/qa/seqret-query-srswww-sv/test.out
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 test/qa/tfextract-keep/tffungi
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 test/qa/tmap-ex/tmap.ps
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 test/qa/tmap-single/tmap.ps
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 test/qa/wobble-ex/x13776.wobble
 test/qa/wossname-ex5/stderr
 test/qa/wossname-ex5/testdef
 test/qa/wossname-ex5/wossname.html
dpkg-source: info: use the '3.0 (quilt)' format to have separate and documented changes to upstream files, see dpkg-source(1)
dpkg-source: unrepresentable changes to source
dpkg-buildpackage: error: dpkg-source -b emboss-6.2.0 gave error exit status 1



--- System information. ---
Architecture: amd64
Kernel:       Linux 2.6.34-1-amd64

Debian Release: squeeze/sid
  500 unstable        ftp.uni-kl.de 
  500 unstable        ftp.debian.org 
  500 testing         ftp.debian.org 
  500 stable          ftp.debian.org 
    1 experimental    ftp.debian.org 

--- Package information. ---
Depends                      (Version) | Installed
======================================-+-======================
emboss-lib                             | 
libajax6                               | 
libc6                         (>= 2.7) | 2.11.2-2
libfreetype6                (>= 2.2.1) | 2.3.11-1
libgd2-noxpm     (>= 2.0.36~rc1~dfsg)  | 2.0.36~rc1~dfsg-3.2
 OR libgd2-xpm    (>= 2.0.36~rc1~dfsg) | 2.0.36~rc1~dfsg-3.2
libjpeg62                              | 6b-16.1
libnucleus6                            | 
libpng12-0               (>= 1.2.13-4) | 1.2.43-1
libx11-6                               | 2:1.3.3-3
zlib1g                    (>= 1:1.1.4) | 1:1.2.3.4.dfsg-3
emboss-data                (= 6.1.0-5) | 
csh                                    | 
 OR c-shell                            | 


Recommends      (Version) | Installed
=========================-+-===========
primer3                   | 
dialign                   | 


Suggests         (Version) | Installed
==========================-+-===========
emboss-doc                 | 
emboss-test                | 
embassy                    | 
clustalw                   |