[Debian-med-packaging] Bug#622345: imagej: still the same with Squeeze...

Martin Weiser weiser2 at natur.cuni.cz
Thu Dec 15 15:03:02 UTC 2011


Hi Andreas,
thank You for your patience.
ImageJ now works OK. I do not know the reason (lame answer, I know) -  
therefore I did not send a message, as I do not know what the cure was.
What may be the cause: after one of the updates, the machine died  
after restart (no reaction on keyboard input or mouse input), so I  
decided to not to waste time with bug fixing (well, maybe it could  
gave me invaluable lessons in linux administration, but...) and  
reinstalled the system.
Here is the output of Michael's suggested commands (I have got CZ locales):
/usr/sbin/update-java-alternatives --list :
java-6-openjdk 1061 /usr/lib/jvm/java-6-openjdk

/usr/sbin/update-alternatives --display java

java - automatický režim
   odkaz momentálně ukazuje na /usr/lib/jvm/java-6-openjdk/jre/bin/java
/usr/bin/gij-4.4 - priorita 1044
/usr/lib/jvm/java-6-openjdk/jre/bin/java - priorita 1061
   závislost java.1.gz: /usr/lib/jvm/java-6-openjdk/jre/man/man1/java.1.gz
Momentální „nejlepší“ verze je „/usr/lib/jvm/java-6-openjdk/jre/bin/java“.

My attempt to translate it:
java - automatic mode
link currently points to /usr/lib/jvm/java-6-openjdk/jre/bin/java
/usr/bin/gij-4.4 - priority 1044
/usr/lib/jvm/java-6-openjdk/jre/bin/java - priority 1061
dependency java.1.gz: /usr/lib/jvm/java-6-openjdk/jre/man/man1/java.1.gz
Current "best" version is „/usr/lib/jvm/java-6-openjdk/jre/bin/java“

Again, thanks for Your help and patience.
Best,
Martin



Cituji Andreas Tille <tille at debian.org>:

> Hi Matrtin,
>
> do you continuosely observe this problem?  If yes, could you please
> follow the instructions given by Michael below?  If it is not possible
> to reproduce the problem I'm tempted to lower the severity of this
> problem.
>
> Kind regards
>
>          Andreas.
>
> On Fri, Jul 22, 2011 at 03:53:54PM +0200, Michael Schutte wrote:
>> Hi Martin!
>>
>> On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote:
>> > Here is the sample session:
>> >
>> > louskacek at zouzel:~$ imagej
>> > Open other images in this ImageJ panel as follows:
>> >   imagej -p 1 <image1> [<image2> ... <imageN>]
>> >
>> > #guess what happens here :-)
>> > #yes, you are right, the main panel appears and disappears
>> > #with this version it is faster than before :-)
>> >
>> > Exception in thread "main" java.lang.NullPointerException
>> >    at java.awt.Component.setDropTarget(libgcj.so.10)
>> >    at ij.plugin.DragAndDrop.run(DragAndDrop.java:28)
>> >    at ij.IJ.runPlugIn(IJ.java:156)
>> >    at ij.IJ.runPlugIn(IJ.java:139)
>> >    at ij.ImageJ.<init>(ImageJ.java:196)
>> >    at ij.ImageJ.main(ImageJ.java:588)
>> > louskacek at zouzel:~$
>>
>> Are you still experiencing this issue?  If so, it would be useful to see
>> the output for the commands
>>
>> 	/usr/sbin/update-java-alternatives --list
>>
>> and
>> 	/usr/sbin/update-alternatives --display java
>>
>> because I suspect the problem is due to gij somehow being the default
>> JRE implementation on your system.  I can indeed reproduce the bug by
>> running “gij-4.6 -jar /usr/share/java/ij.jar”.
>>
>> All the best,
>> --
>> Michael Schutte                   | michi@{uiae.at,debian.org}
>> Innsbruck, Austria                | happily accepting encrypted mail
>> OpenPGP: 0x16fb 517b a866 c3f6 8f11 1485 f3e4 122f 1D8C 261A
>
>
>
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>
>
> --
> http://fam-tille.de
>
>







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