[Debian-med-packaging] Bug#653042: Bug#653042: segfault in mpileup when alignment is outside of the ref

[Don Armstrong]

On Fri, 23 Dec 2011, Charles Plessy wrote:
> here is a patch proposed by a Debian user on our bug tracker, that prevents
> samtools mpileup to crash when a read is aligned outside of the reference.
> 
> Please consider including it to your next release, and do not hesitate to send
> us comments if there are potential problems with this patch.
> 
[...]
> > +		  fprintf(stderr,"[%s] Skipping because %d is outside of %d [ref:%s]\n",__func__,b->core.pos,ma->ref_len,ma->ref_id);

This should actually be [ref:%d]; my mistake.


Don Armstrong

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