[Debian-med-packaging] Bug#614725: amide: FTBFS with --no-add-needed, missing -lavutil

Wed Feb 23 02:05:25 UTC 2011

Package: amide
Version: 0.9.2-1
Severity: serious
Tags: sid wheezy
Justification: fails to build from source (but built successfully in the past)

Hi,

amide seems to FTBFS with the latest gcc-4.4 in sid (which passes
--no-add-needed to the linker, see
http://wiki.debian.org/ToolChain/DSOLinking#Notresolvingsymbolsinindirectdependentsharedlibraries)

Full build log at
https://buildd.debian.org/fetch.cgi?pkg=amide&arch=amd64&ver=0.9.2-1%2Bb2&stamp=1297977026&file=log&as=raw

Excerpt below.

/bin/bash ../libtool --tag=CXX   --mode=link g++ -I/usr/include  -pthread -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/libdrm -I/usr/include/libxml2 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0   -pthread -DORBIT2=1 -I/usr/include/gnome-vfs-2.0 -I/usr/lib/gnome-vfs-2.0/include -I/usr/include/gconf/2 -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include    -I/usr/include/dcmtk/dcmdata -I/usr/include/libpng12 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include  -DG_DISABLE_DEPRECATED -O6 -Wall  -Wl,-z,defs -o amide amitk_marshal.o amitk_type_builtins.o  amitk_raw_data_UBYTE.o amitk_raw_data_SBYTE.o amitk_raw_data_USHORT.o amitk_raw_data_SSHORT.o amitk_raw_data_UINT.o amitk_raw_data_SINT.o amitk_raw_data_FLOAT.o amitk_raw_data_DOUBLE.o  amitk_data_set_UBYTE_0D_SCALING.o amitk_data_set_UBYTE_1D_SCALING.o amitk_data_set_UBYTE_2D_SCALING.o amitk_data_set_SBYTE_0D_SCALING.o amitk_data_set_SBYTE_1D_SCALING.o amitk_data_set_SBYTE_2D_SCALING.o amitk_data_set_USHORT_0D_SCALING.o amitk_data_set_USHORT_1D_SCALING.o amitk_data_set_USHORT_2D_SCALING.o amitk_data_set_SSHORT_0D_SCALING.o amitk_data_set_SSHORT_1D_SCALING.o amitk_data_set_SSHORT_2D_SCALING.o amitk_data_set_UINT_0D_SCALING.o amitk_data_set_UINT_1D_SCALING.o amitk_data_set_UINT_2D_SCALING.o amitk_data_set_SINT_0D_SCALING.o amitk_data_set_SINT_1D_SCALING.o amitk_data_set_SINT_2D_SCALING.o amitk_data_set_FLOAT_0D_SCALING.o amitk_data_set_FLOAT_1D_SCALING.o amitk_data_set_FLOAT_2D_SCALING.o amitk_data_set_DOUBLE_0D_SCALING.o amitk_data_set_DOUBLE_1D_SCALING.o amitk_data_set_DOUBLE_2D_SCALING.o amitk_data_set_UBYTE_0D_SCALING_INTERCEPT.o amitk_data_set_UBYTE_1D_SCALING_INTERCEPT.o amitk_data_set_UBYTE_2D_SCALING_INTERCEPT.o amitk_data_set_SBYTE_0D_SCALING_INTERCEPT.o amitk_data_set_SBYTE_1D_SCALING_INTERCEPT.o amitk_data_set_SBYTE_2D_SCALING_INTERCEPT.o amitk_data_set_USHORT_0D_SCALING_INTERCEPT.o amitk_data_set_USHORT_1D_SCALING_INTERCEPT.o amitk_data_set_USHORT_2D_SCALING_INTERCEPT.o amitk_data_set_SSHORT_0D_SCALING_INTERCEPT.o amitk_data_set_SSHORT_1D_SCALING_INTERCEPT.o amitk_data_set_SSHORT_2D_SCALING_INTERCEPT.o amitk_data_set_UINT_0D_SCALING_INTERCEPT.o amitk_data_set_UINT_1D_SCALING_INTERCEPT.o amitk_data_set_UINT_2D_SCALING_INTERCEPT.o amitk_data_set_SINT_0D_SCALING_INTERCEPT.o amitk_data_set_SINT_1D_SCALING_INTERCEPT.o amitk_data_set_SINT_2D_SCALING_INTERCEPT.o amitk_data_set_FLOAT_0D_SCALING_INTERCEPT.o amitk_data_set_FLOAT_1D_SCALING_INTERCEPT.o amitk_data_set_FLOAT_2D_SCALING_INTERCEPT.o amitk_data_set_DOUBLE_0D_SCALING_INTERCEPT.o amitk_data_set_DOUBLE_1D_SCALING_INTERCEPT.o amitk_data_set_DOUBLE_2D_SCALING_INTERCEPT.o  amitk_roi_ELLIPSOID.o amitk_roi_CYLINDER.o amitk_roi_BOX.o amitk_roi_ISOCONTOUR_2D.o amitk_roi_ISOCONTOUR_3D.o amitk_roi_FREEHAND_2D.o amitk_roi_FREEHAND_3D.o  amide.o amide_gconf.o amide_gnome.o amitk_common.o alignment.o analysis.o amitk_canvas.o amitk_canvas_object.o amitk_color_table.o amitk_color_table_menu.o amitk_data_set.o amitk_dial.o amitk_xif_sel.o amitk_fiducial_mark.o amitk_filter.o amitk_line_profile.o amitk_object.o amitk_object_dialog.o amitk_point.o amitk_preferences.o amitk_progress_dialog.o amitk_raw_data.o amitk_roi.o amitk_space.o amitk_space_edit.o amitk_study.o amitk_threshold.o amitk_tree_view.o amitk_volume.o amitk_window_edit.o dcmtk_interface.o fads.o image.o legacy.o libecat_interface.o libmdc_interface.o mpeg_encode.o pixmaps.o raw_data_import.o render.o tb_alignment.o tb_crop.o tb_export_data_set.o tb_fads.o tb_filter.o tb_fly_through.o tb_math.o tb_profile.o tb_roi_analysis.o ui_common.o ui_gate_dialog.o ui_preferences_dialog.o ui_render.o ui_render_dialog.o ui_render_movie.o ui_series.o ui_study.o ui_study_cb.o ui_time_dialog.o xml.o -L/usr/lib -lgsl -lgslcblas -lm  -lvolpack -pthread -lxml2 -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lgio-2.0 -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   -pthread -lgnomevfs-2 -lgmodule-2.0 -lgobject-2.0 -lgthread-2.0 -lrt -lgconf-2 -lglib-2.0   -L/usr/lib -lmdc -lm -lglib-2.0 -lz -lpng12 -lavcodec   -ldcmdata -lofstd -lz -lpthread   
libtool: link: g++ -I/usr/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/libdrm -I/usr/include/libxml2 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -pthread -DORBIT2=1 -I/usr/include/gnome-vfs-2.0 -I/usr/lib/gnome-vfs-2.0/include -I/usr/include/gconf/2 -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/dcmtk/dcmdata -I/usr/include/libpng12 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DG_DISABLE_DEPRECATED -O6 -Wall -Wl,-z -Wl,defs -o amide amitk_marshal.o amitk_type_builtins.o amitk_raw_data_UBYTE.o amitk_raw_data_SBYTE.o amitk_raw_data_USHORT.o amitk_raw_data_SSHORT.o amitk_raw_data_UINT.o amitk_raw_data_SINT.o amitk_raw_data_FLOAT.o amitk_raw_data_DOUBLE.o amitk_data_set_UBYTE_0D_SCALING.o amitk_data_set_UBYTE_1D_SCALING.o amitk_data_set_UBYTE_2D_SCALING.o amitk_data_set_SBYTE_0D_SCALING.o amitk_data_set_SBYTE_1D_SCALING.o amitk_data_set_SBYTE_2D_SCALING.o amitk_data_set_USHORT_0D_SCALING.o amitk_data_set_USHORT_1D_SCALING.o amitk_data_set_USHORT_2D_SCALING.o amitk_data_set_SSHORT_0D_SCALING.o amitk_data_set_SSHORT_1D_SCALING.o amitk_data_set_SSHORT_2D_SCALING.o amitk_data_set_UINT_0D_SCALING.o amitk_data_set_UINT_1D_SCALING.o amitk_data_set_UINT_2D_SCALING.o amitk_data_set_SINT_0D_SCALING.o amitk_data_set_SINT_1D_SCALING.o amitk_data_set_SINT_2D_SCALING.o amitk_data_set_FLOAT_0D_SCALING.o amitk_data_set_FLOAT_1D_SCALING.o amitk_data_set_FLOAT_2D_SCALING.o amitk_data_set_DOUBLE_0D_SCALING.o amitk_data_set_DOUBLE_1D_SCALING.o amitk_data_set_DOUBLE_2D_SCALING.o amitk_data_set_UBYTE_0D_SCALING_INTERCEPT.o amitk_data_set_UBYTE_1D_SCALING_INTERCEPT.o amitk_data_set_UBYTE_2D_SCALING_INTERCEPT.o amitk_data_set_SBYTE_0D_SCALING_INTERCEPT.o amitk_data_set_SBYTE_1D_SCALING_INTERCEPT.o amitk_data_set_SBYTE_2D_SCALING_INTERCEPT.o amitk_data_set_USHORT_0D_SCALING_INTERCEPT.o amitk_data_set_USHORT_1D_SCALING_INTERCEPT.o amitk_data_set_USHORT_2D_SCALING_INTERCEPT.o amitk_data_set_SSHORT_0D_SCALING_INTERCEPT.o amitk_data_set_SSHORT_1D_SCALING_INTERCEPT.o amitk_data_set_SSHORT_2D_SCALING_INTERCEPT.o amitk_data_set_UINT_0D_SCALING_INTERCEPT.o amitk_data_set_UINT_1D_SCALING_INTERCEPT.o amitk_data_set_UINT_2D_SCALING_INTERCEPT.o amitk_data_set_SINT_0D_SCALING_INTERCEPT.o amitk_data_set_SINT_1D_SCALING_INTERCEPT.o amitk_data_set_SINT_2D_SCALING_INTERCEPT.o amitk_data_set_FLOAT_0D_SCALING_INTERCEPT.o amitk_data_set_FLOAT_1D_SCALING_INTERCEPT.o amitk_data_set_FLOAT_2D_SCALING_INTERCEPT.o amitk_data_set_DOUBLE_0D_SCALING_INTERCEPT.o amitk_data_set_DOUBLE_1D_SCALING_INTERCEPT.o amitk_data_set_DOUBLE_2D_SCALING_INTERCEPT.o amitk_roi_ELLIPSOID.o amitk_roi_CYLINDER.o amitk_roi_BOX.o amitk_roi_ISOCONTOUR_2D.o amitk_roi_ISOCONTOUR_3D.o amitk_roi_FREEHAND_2D.o amitk_roi_FREEHAND_3D.o amide.o amide_gconf.o amide_gnome.o amitk_common.o alignment.o analysis.o amitk_canvas.o amitk_canvas_object.o amitk_color_table.o amitk_color_table_menu.o amitk_data_set.o amitk_dial.o amitk_xif_sel.o amitk_fiducial_mark.o amitk_filter.o amitk_line_profile.o amitk_object.o amitk_object_dialog.o amitk_point.o amitk_preferences.o amitk_progress_dialog.o amitk_raw_data.o amitk_roi.o amitk_space.o amitk_space_edit.o amitk_study.o amitk_threshold.o amitk_tree_view.o amitk_volume.o amitk_window_edit.o dcmtk_interface.o fads.o image.o legacy.o libecat_interface.o libmdc_interface.o mpeg_encode.o pixmaps.o raw_data_import.o render.o tb_alignment.o tb_crop.o tb_export_data_set.o tb_fads.o tb_filter.o tb_fly_through.o tb_math.o tb_profile.o tb_roi_analysis.o ui_common.o ui_gate_dialog.o ui_preferences_dialog.o ui_render.o ui_render_dialog.o ui_render_movie.o ui_series.o ui_study.o ui_study_cb.o ui_time_dialog.o xml.o -pthread -pthread  -L/usr/lib -lgsl -lgslcblas /usr/lib/libvolpack.so /usr/lib/libxml2.so /usr/lib/libgnomecanvas-2.so /usr/lib/libart_lgpl_2.so /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so /usr/lib/libpangoft2-1.0.so /usr/lib/libgdk_pixbuf-2.0.so /usr/lib/libpangocairo-1.0.so /usr/lib/libcairo.so /usr/lib/libgio-2.0.so /usr/lib/libpango-1.0.so /usr/lib/libfreetype.so -lfontconfig /usr/lib/libgnomevfs-2.so /usr/lib/libgmodule-2.0.so /usr/lib/libgobject-2.0.so /usr/lib/libgthread-2.0.so -lrt /usr/lib/libgconf-2.so /usr/lib/libmdc.so -lm /usr/lib/libglib-2.0.so -lpng12 -lavcodec -ldcmdata -lofstd -lz -lpthread -pthread
/usr/bin/ld: mpeg_encode.o: undefined reference to symbol 'av_free@@LIBAVUTIL_50'
/usr/bin/ld: note: 'av_free@@LIBAVUTIL_50' is defined in DSO /usr/lib64/libavutil.so.50 so try adding it to the linker command line
/usr/lib64/libavutil.so.50: could not read symbols: Invalid operation
collect2: ld returned 1 exit status

Cheers,
Julien