[Debian-med-packaging] Build log of seaview_4.2.12-1_amd64.changes.
Charles Plessy
plessy at debian.org
Fri Jun 10 12:16:48 UTC 2011
For the record.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
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? seaview 4.2.12-1 (amd64) 10 Jun 2011 15:27 ?
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Package: seaview
Version: 4.2.12-1
Source Version: 4.2.12-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/seaview-qrVROl' with '?BUILDDIR?'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-22480c36-c719-4be3-97f8-84d0f6ddad9c' with '?CHROOT?'
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? Update chroot ?
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Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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seaview_4.2.12-1.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/?BUILDDIR?/resolver-GAlJwA/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/706 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously deselected package sbuild-build-depends-core-dummy.
(Reading database ... 10812 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), libfltk1.1-dev, libjpeg-dev, libpng12-dev, libxft-dev, libxext-dev, zlib1g-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), libfltk1.1-dev, libjpeg-dev, libpng12-dev, libxft-dev, libxext-dev, zlib1g-dev
dpkg-deb: building package `sbuild-build-depends-seaview-dummy' in `/?BUILDDIR?/resolver-X8FVy5/apt_archive/sbuild-build-depends-seaview-dummy.deb'.
OK
Reading package lists...
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? Install seaview build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs debhelper file fontconfig-config gettext gettext-base
groff-base html2text intltool-debian libcroco3 libdrm2 libexpat1
libexpat1-dev libfltk1.1 libfltk1.1-dev libfontconfig1 libfontconfig1-dev
libfreetype6 libfreetype6-dev libgl1-mesa-glx libglib2.0-0 libjpeg62
libjpeg62-dev libmagic1 libpcre3 libpipeline1 libpng12-0 libpng12-dev
libpopt0 libpthread-stubs0 libpthread-stubs0-dev libunistring0 libx11-6
libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdamage1
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2
libxinerama1 libxml2 libxrender-dev libxrender1 libxxf86vm1 man-db
pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev
x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-xext-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make gettext-doc groff
fltk1.1-doc fluid libglu1-mesa-dev libglu-dev libpng12-0-dev libxinerama-dev
less www-browser libmail-box-perl
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libgl1-mesa-dev libgl-dev
libgl1-mesa-dri libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file fontconfig-config gettext gettext-base
groff-base html2text intltool-debian libcroco3 libdrm2 libexpat1
libexpat1-dev libfltk1.1 libfltk1.1-dev libfontconfig1 libfontconfig1-dev
libfreetype6 libfreetype6-dev libgl1-mesa-glx libglib2.0-0 libjpeg62
libjpeg62-dev libmagic1 libpcre3 libpipeline1 libpng12-0 libpng12-dev
libpopt0 libpthread-stubs0 libpthread-stubs0-dev libunistring0 libx11-6
libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdamage1
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2
libxinerama1 libxml2 libxrender-dev libxrender1 libxxf86vm1 man-db
pkg-config po-debconf sbuild-build-depends-seaview-dummy ttf-dejavu-core ucf
x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev
x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev
zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/22.8 MB of archives.
After this operation, 70.9 MB of additional disk space will be used.
Selecting previously deselected package libdrm2.
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Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
Setting up x11-common (1:7.6+7) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
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Setting up xtrans-dev (1.2.6-1) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
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Setting up man-db (2.6.0.2-1) ...
Building database of manual pages ...
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Setting up file (5.04-5+b1) ...
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Setting up libpcre3 (8.12-3) ...
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Setting up ucf (3.0025+nmu2) ...
Setting up html2text (1.3.2a-15) ...
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No schema files found: doing nothing.
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Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.1.6) ...
Setting up cdbs (0.4.94) ...
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? Build environment ?
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Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-12 gcc-4.6_4.6.0-12 libc6-dev_2.13-6 libstdc++6_4.6.0-12 libstdc++6-4.6-dev_4.6.0-12 linux-libc-dev_2.6.39-2
Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-12 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-12 gcc_4:4.6.0-5 gcc-4.6_4.6.0-12 gcc-4.6-base_4.6.0-12 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.13-6 libc-dev-bin_2.13-6 libc6_2.13-6 libc6-dev_2.13-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdb4.7_4.7.25-20 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libdrm2_2.4.25-3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libfltk1.1_1.1.10-4 libfltk1.1-dev_1.1.10-4 libfontconfig1_2.8.0-2.2 libfontconfig1-dev_2.8.0-2.2 libfreetype6_2.4.4-1 libfreetype6-dev_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-12 libgdbm3_1.8.3-9 libgl1-mesa-glx_7.10.2-3 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-12 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libpam-modules_1.1.3-1 libpam-runtime_1.1.3-1 libpam0g_1.1.3-1 libpcre3_8.12-3 libpipeline1_1.2.0-2 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libpwl5_0.11.2-3 libquadmath0_4.6.0-12 libreadline6_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libss2_1.41.12-4 libstdc++6_4.6.0-12 libstdc++6-4.6-dev_4.6.0-12 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libx11-dev_2:1.4.3-1 libxau-dev_1:1.0.6-2 libxau6_1:1.0.6-2 libxcb1_1.7-3 libxcb1-dev_1.7-3 libxdamage1_1:1.1.3-1 libxdmcp-dev_1:1.1.0-2 libxdmcp6_1:1.1.0-2 libxext-dev_2:1.3.0-1 libxext6_2:1.3.0-1 libxfixes3_1:5.0-2 libxft-dev_2.2.0-2 libxft2_2.2.0-2 libxinerama1_2:1.1.1-1 libxml2_2.7.8.dfsg-3 libxrender-dev_1:0.9.6-1 libxrender1_1:0.9.6-1 libxxf86vm1_1:1.1.1-1 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 multiarch-support_2.13-6 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-seaview-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 util-linux_2.17.2-9.1 x11-common_1:7.6+7 x11proto-core-dev_7.0.21-2 x11proto-input-dev_2.0.2-1 x11proto-kb-dev_1.0.5-1 x11proto-render-dev_2:0.11.1-1 x11proto-xext-dev_7.2.0-2 xorg-sgml-doctools_1:1.7-1 xtrans-dev_1.2.6-1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
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? Build ?
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Unpack source
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dpkg-source: warning: extracting unsigned source package (seaview_4.2.12-1.dsc)
dpkg-source: info: extracting seaview in seaview-4.2.12
dpkg-source: info: unpacking seaview_4.2.12.orig.tar.gz
dpkg-source: info: unpacking seaview_4.2.12-1.debian.tar.gz
Check disc space
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Sufficient free space for build
dpkg-buildpackage
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dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package seaview
dpkg-buildpackage: source version 1:4.2.12-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build seaview-4.2.12
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\\\"/usr/share/seaview/seaview.html\\\" -DPHYMLNAME=\\\"phyml\\\"" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean
make[1]: Entering directory `/?BUILDDIR?/seaview-4.2.12'
make[1]: *** No rule to make target `clean'.
make[1]: Leaving directory `/?BUILDDIR?/seaview-4.2.12'
make: [makefile-clean] Error 2 (ignored)
dh_clean
dpkg-source -b seaview-4.2.12
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building seaview using existing ./seaview_4.2.12.orig.tar.gz
dpkg-source: info: building seaview in seaview_4.2.12-1.debian.tar.gz
dpkg-source: info: building seaview in seaview_4.2.12-1.dsc
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\\\"/usr/share/seaview/seaview.html\\\" -DPHYMLNAME=\\\"phyml\\\"" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS=""
make[1]: Entering directory `/?BUILDDIR?/seaview-4.2.12'
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" custom.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" use_mase_files.cxx
use_mase_files.cxx: In function 'void save_regions(list_regions*, FILE*)':
use_mase_files.cxx:892:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
use_mase_files.cxx: In function 'int prepare_printout(const char*, char**, int, char**, int*, int, int, int, int, char*, int)':
use_mase_files.cxx:1416:47: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:1416:47: warning: 'vary_pos' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'char* save_alignment_or_region(const char*, char**, char**, char*, char**, int, int*, list_regions*, region*, known_format, int, int**, char**, int*, int, int, int, char**, char**, int, int, char**, const Fl_Menu_Item*, int)':
use_mase_files.cxx:1328:6: warning: 'err' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'int read_clustal_align(const char*, char***, char***, char***, char**, char**)':
use_mase_files.cxx:591:16: warning: 'wid_name' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:593:33: warning: 'curr_max_len' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:605:52: warning: 'l' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'int read_phylip_align(const char*, char***, char***, char***, char**, char**)':
use_mase_files.cxx:500:33: warning: 'seqname' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:500:56: warning: 'comments' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:500:12: warning: 'seq' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:476:25: warning: 'q' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)':
use_mase_files.cxx:142:14: warning: 'lpre' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" regions.cxx
regions.cxx: In function 'void create_variable_mask(SEA_VIEW*, region*)':
regions.cxx:190:5: warning: 'segment' may be used uninitialized in this function [-Wuninitialized]
regions.cxx: In function 'void delete_region(SEA_VIEW*, int)':
regions.cxx:352:29: warning: 'previous' may be used uninitialized in this function [-Wuninitialized]
regions.cxx: In function 'const char* site_mask_creation_dialog(SEA_VIEW*, position_mask*)':
regions.cxx:539:10: warning: 'retval' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" load_seq.cxx
load_seq.cxx: In function 'int add_seq_to_align(SEA_VIEW*, char*, char*, int)':
load_seq.cxx:386:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" align.cxx
align.cxx: In function 'void unalign(SEA_VIEW*)':
align.cxx:1333:62: warning: 'calc_color_function' may be used uninitialized in this function [-Wuninitialized]
align.cxx: In function 'int replace_align_part(SEA_VIEW*, int, int, char*, int, int, int*, align_choice)':
align.cxx:413:61: warning: 'calc_color_function' may be used uninitialized in this function [-Wuninitialized]
align.cxx: In function 'void profile_align(SEA_VIEW*)':
align.cxx:1199:68: warning: 'calc_color_function' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" xfmatpt.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" comlines.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" resource.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" nexus.cxx
nexus.cxx: In function 'int process_chars_format(FILE*, int*, int*, int*, int*)':
nexus.cxx:337:8: warning: 'gap' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'char** process_taxa_taxlabels(FILE*, int)':
nexus.cxx:357:1: warning: 'p' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'list_segments* build_list_pairs(FILE*, int)':
nexus.cxx:440:39: warning: 'next' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'char** process_block_data(FILE*, int*, char***, int*, int*)':
nexus.cxx:654:59: warning: 'gap' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'char** process_block_characters(FILE*, int*, char***, int*, int*)':
nexus.cxx:686:61: warning: 'gap' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'int process_unal_format(FILE*)':
nexus.cxx:1008:5: warning: 'protein' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" viewasprots.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" racnuc_fetch.cxx
racnuc_fetch.cxx: In function 'void use_key_callback(Fl_Widget*, void*)':
racnuc_fetch.cxx:301:59: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" concatenate.cxx
concatenate.cxx: In function 'void do_concatenate_callback(Fl_Widget*, void*)':
concatenate.cxx:110:75: warning: 'gaps' may be used uninitialized in this function [-Wuninitialized]
concatenate.cxx:122:15: warning: 'found' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/raa_acnuc.c
csrc/raa_acnuc.c: In function 'fill_gfrag_buf':
csrc/raa_acnuc.c:570:12: warning: variable 'length' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_bit1':
csrc/raa_acnuc.c:1109:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_bit0':
csrc/raa_acnuc.c:1119:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_copylist':
csrc/raa_acnuc.c:1140:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_zerolist':
csrc/raa_acnuc.c:1150:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_setliststate':
csrc/raa_acnuc.c:1160:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_nextmatchkey':
csrc/raa_acnuc.c:2094:15: warning: 'no_more' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/parser.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/md5.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/zsockr.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/misc_acnuc.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" FL/Fl_Native_File_Chooser_FLTK.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" trees.cxx
trees.cxx: In function 'matrix* Obs_Dist(allseq*, model*)':
trees.cxx:1111:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
trees.cxx: In function 'matrix* K80_dist_nogamma(allseq*)':
trees.cxx:1252:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
trees.cxx: In function 'int ludcmp(double**, int, int*, double*)':
trees.cxx:1833:8: warning: 'imax' may be used uninitialized in this function [-Wuninitialized]
trees.cxx: In function 'matrix* calc_dist_matrix(allseq*, int, int, char**, int)':
trees.cxx:454:10: warning: 'phyml_mat' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" treedraw.cxx
treedraw.cxx: In function 'int calc_text_size(char*, int*, int*)':
treedraw.cxx:1247:39: warning: 'ascent' may be used uninitialized in this function [-Wuninitialized]
treedraw.cxx:1246:39: warning: 'height' may be used uninitialized in this function [-Wuninitialized]
treedraw.cxx: In function 'const char* loadphylip(FD_nj_plot*, char*, char*)':
treedraw.cxx:1501:1: warning: 'p2' may be used uninitialized in this function [-Wuninitialized]
treedraw.cxx: At global scope:
treedraw.cxx:85:13: warning: 'void copy(Fl_Widget*, void*)' declared 'static' but never defined [-Wunused-function]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" addbootstrap.cxx
addbootstrap.cxx: In function 'char* preptree(char*, int*, noeud**, noeud***, branche**)':
addbootstrap.cxx:268:53: warning: 'branches' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" least_squares_brl.cxx
least_squares_brl.cxx: In function 'int tree_btos(int**, int, double*, double*, double*, char**, noeud2**)':
least_squares_brl.cxx:409:172: warning: 'n3' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:402:17: warning: 'n2' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:396:17: warning: 'n1' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:309:47: warning: 'tax2' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:309:41: warning: 'tax1' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:348:3: warning: 'sommebi' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/dnapars.c
csrc/dnapars.c: In function 'fillin.isra.0':
csrc/dnapars.c:427:8: warning: 'rs' may be used uninitialized in this function [-Wuninitialized]
csrc/dnapars.c: In function 'dnapars':
csrc/dnapars.c:388:28: warning: 'ns' may be used uninitialized in this function [-Wuninitialized]
csrc/dnapars.c:272:9: note: 'ns' was declared here
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/protpars.c
csrc/protpars.c: In function 'protpars':
csrc/protpars.c:325:5: warning: 'aa' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/lwl.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/bionj.c
csrc/bionj.c: In function 'Bionj':
csrc/bionj.c:71:3: warning: implicit declaration of function 'Clean_Tree_Connections' [-Wimplicit-function-declaration]
csrc/bionj.c: In function 'Finish':
csrc/bionj.c:133:3: warning: implicit declaration of function 'Connect_One_Edge_To_Two_Nodes' [-Wimplicit-function-declaration]
csrc/bionj.c: In function 'Best_Pair':
csrc/bionj.c:305:3: warning: implicit declaration of function 'Free' [-Wimplicit-function-declaration]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/phyml_util.c
csrc/phyml_util.c: In function 'JC69_Dist':
csrc/phyml_util.c:119:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" pseudoterminal.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" unrooted.cxx
unrooted.cxx: In function 'void postscript_unrooted(FD_unrooted*, const char*)':
unrooted.cxx:443:6: warning: variable 'erreur' set but not used [-Wunused-but-set-variable]
unrooted.cxx: In function 'const char* preptree_unrooted(const char*, FD_unrooted*)':
unrooted.cxx:1215:2: warning: 'p2' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx:1181:21: note: 'p2' was declared here
unrooted.cxx: In function 'int set_angles_noeuds(bignoeud*, bignoeud*, double, double*, double)':
unrooted.cxx:1480:74: warning: 'poids2' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx:1480:74: warning: 'poids1' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx:1439:6: warning: 'poids' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx: At global scope:
unrooted.cxx:44:13: warning: 'void parcourir_branches(noeud*, noeud*)' declared 'static' but never defined [-Wunused-function]
unrooted.cxx:45:13: warning: 'void process_branche(noeud*, noeud*, double)' declared 'static' but never defined [-Wunused-function]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" postscript.cxx
postscript.cxx: In function 'int postscript_printout(SEA_VIEW*, const char*, int, int, paperformat, int, int, int)':
postscript.cxx:29:5: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
postscript.cxx:315:22: warning: 'vary_pos' may be used uninitialized in this function [-Wuninitialized]
postscript.cxx:39:6: note: 'vary_pos' was declared here
g++ -o seaview -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" seaview.cxx custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o Fl_Native_File_Chooser_FLTK.o trees.o treedraw.o addbootstrap.o least_squares_brl.o dnapars.o protpars.o lwl.o bionj.o phyml_util.o pseudoterminal.o unrooted.o postscript.o \
-lfltk_images -lfltk \
-lXft -lXext -lfontconfig -ljpeg -lpng \
-lX11 -lm -lz
seaview.cxx:4698:1: warning: "/*" within comment [-Wcomment]
seaview.cxx: In function 'void draw_cursor(Fl_Widget*, int, int, int, int)':
seaview.cxx:733:63: warning: array subscript has type 'char' [-Wchar-subscripts]
seaview.cxx: In function 'void draw_dna_seqs(Fl_Widget*, SEA_VIEW*)':
seaview.cxx:998:48: warning: array subscript has type 'char' [-Wchar-subscripts]
seaview.cxx: In function 'void colors_callback(Fl_Widget*, void*)':
seaview.cxx:1691:15: warning: variable 'item' set but not used [-Wunused-but-set-variable]
seaview.cxx: In function 'void goto_callback(Fl_Widget*, void*)':
seaview.cxx:2481:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx: In function 'void handle_keyboard(SEA_VIEW*, unsigned int, int)':
seaview.cxx:4242:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx:4246:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx:4250:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx:4254:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx: In function 'void lrdu_button_callback(Fl_Widget*, void*)':
seaview.cxx:1643:1: warning: 'newval' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void draw_dna_seqs(Fl_Widget*, SEA_VIEW*)':
seaview.cxx:1008:33: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'int insert_gaps_at(SEA_VIEW*, int, int, int)':
seaview.cxx:3399:30: warning: 'gapcolor' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void del_gap_only_sites(SEA_VIEW*)':
seaview.cxx:1470:27: warning: 'debut' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:1457:1: warning: 'position' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'int delete_selected_seqs(SEA_VIEW*)':
seaview.cxx:1545:31: warning: 'temp_int' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:1536:69: warning: 'temp_data' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void edit_menu_callback(Fl_Widget*, long int)':
seaview.cxx:2318:14: warning: 'new_pos' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void handle_keyboard(SEA_VIEW*, unsigned int, int)':
seaview.cxx:4429:3: warning: 'count_each' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:4353:2: warning: 'count_each' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:4307:31: warning: 'count_each' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:4312:37: warning: 'count' may be used uninitialized in this function [-Wuninitialized]
make[1]: Leaving directory `/?BUILDDIR?/seaview-4.2.12'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
DEB_MAKE_CHECK_TARGET unset, not running checks
DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
Adding cdbs dependencies to debian/seaview.substvars
dh_installdirs -pseaview
dh_installdocs -pseaview
dh_installexamples -pseaview
dh_installman -pseaview
dh_installinfo -pseaview
dh_installmenu -pseaview
dh_installcron -pseaview
dh_installinit -pseaview
dh_installdebconf -pseaview
dh_installemacsen -pseaview
dh_installcatalogs -pseaview
dh_installpam -pseaview
dh_installlogrotate -pseaview
dh_installlogcheck -pseaview
dh_installchangelogs -pseaview
dh_installudev -pseaview
dh_lintian -pseaview
dh_bugfiles -pseaview
dh_install -pseaview
dh_link -pseaview
dh_installmime -pseaview
dh_installgsettings -pseaview
dh_strip -pseaview
dh_compress -pseaview
dh_fixperms -pseaview
dh_makeshlibs -pseaview
dh_installdeb -pseaview
dh_perl -pseaview
dh_shlibdeps -pseaview
dh_gencontrol -pseaview
dh_md5sums -pseaview
dh_builddeb -pseaview
dpkg-deb: building package `seaview' in `../seaview_4.2.12-1_amd64.deb'.
dpkg-genchanges >../seaview_4.2.12-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build seaview-4.2.12
dpkg-buildpackage: full upload (original source is included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110610-1529
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
seaview_4.2.12-1_amd64.changes:
???????????????????????????????
Format: 1.8
Date: Fri, 10 Jun 2011 15:26:56 +0900
Source: seaview
Binary: seaview
Architecture: source amd64
Version: 1:4.2.12-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
seaview - Multiplatform interface for sequence alignment and phylogeny
Changes:
seaview (1:4.2.12-1) unstable; urgency=low
.
* New upstream versions.
* Using Debhelper compatibility level 8 (debian/control, debian/compat).
* Clean extra files through dh_clean (debian/clean, debian/rules).
* Simplified build system using CDBS to pass options through CFLAGS, removing
need for patching Makefile (debian/rules, debian/patches, debian/control).
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
Checksums-Sha1:
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4047fafdc42740d4dffee8a9f4f585709e9cbe88 302933 seaview_4.2.12.orig.tar.gz
9d2a913188ba19cc4848647ad994219cfebea9d5 16348 seaview_4.2.12-1.debian.tar.gz
63ccb15f614275b56ddb9558a7bb5ee4f494b250 279904 seaview_4.2.12-1_amd64.deb
Checksums-Sha256:
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85ed027a3f6219442b3739206405cd1136232dc44efd253e0bc83ec38a4f8dce 279904 seaview_4.2.12-1_amd64.deb
Files:
3f34cf3dfd4bb135364ef4bf40c5b946 1209 non-free/science optional seaview_4.2.12-1.dsc
59055f1173490d71a7b36c5d036b9fca 302933 non-free/science optional seaview_4.2.12.orig.tar.gz
7bfc7ee6ffcacd6da73f9354cc57c329 16348 non-free/science optional seaview_4.2.12-1.debian.tar.gz
6c2cb135acc9e68defd7ee56b000e430 279904 non-free/science optional seaview_4.2.12-1_amd64.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
seaview_4.2.12-1_amd64.deb
??????????????????????????
new debian package, version 2.0.
size 279904 bytes: control archive= 1741 bytes.
1286 bytes, 21 lines control
1165 bytes, 17 lines md5sums
551 bytes, 17 lines * postinst #!/bin/sh
467 bytes, 13 lines * postrm #!/bin/sh
Package: seaview
Version: 1:4.2.12-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 688
Depends: libc6 (>= 2.7), libfltk1.1 (>= 1.1.6), libfontconfig1 (>= 2.8.0), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1), libx11-6, libxft2 (>> 2.1.1), zlib1g (>= 1:1.1.4)
Recommends: clustalw, muscle, phyml
Section: non-free/science
Priority: optional
Homepage: http://pbil.univ-lyon1.fr/software/seaview.html
Description: Multiplatform interface for sequence alignment and phylogeny
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
Alignments can be manually edited. It drives the programs Muscle or Clustal?W
for multiple sequence alignment, and also allows to use any external alignment
algorithm able to read and write FASTA-formatted files. It computes
phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or
by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic
trees on screen or PostScript files, and allows to download sequences from
EMBL/GenBank/UniProt using the Internet.
drwxr-xr-x root/root 0 2011-06-10 15:29 ./
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/lib/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/lib/mime/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/lib/mime/packages/
-rw-r--r-- root/root 127 2008-01-14 19:21 ./usr/lib/mime/packages/seaview
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/bin/
-rwxr-xr-x root/root 484248 2011-06-10 15:29 ./usr/bin/seaview
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/menu/
-rw-r--r-- root/root 257 2007-07-21 12:14 ./usr/share/menu/seaview
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/man/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/man/man1/
-rw-r--r-- root/root 1700 2011-06-10 15:29 ./usr/share/man/man1/seaview.1.gz
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/pixmaps/
-rw-r--r-- root/root 3751 2006-10-02 20:45 ./usr/share/pixmaps/seaview.xpm
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/doc-base/
-rw-r--r-- root/root 288 2009-05-17 14:36 ./usr/share/doc-base/seaview-help
-rw-r--r-- root/root 137 2010-06-25 19:21 ./usr/share/doc-base/seaview-reference
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/applications/
-rw-r--r-- root/root 908 2008-01-14 19:21 ./usr/share/applications/seaview.desktop
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/mime/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/mime/packages/
-rw-r--r-- root/root 513 2008-01-14 19:23 ./usr/share/mime/packages/seaview.xml
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/doc/seaview/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/doc/seaview/examples/
-rw-r--r-- root/root 2002 2006-09-19 23:21 ./usr/share/doc/seaview/examples/nuc.aln
-rw-r--r-- root/root 2579 2006-09-19 23:21 ./usr/share/doc/seaview/examples/seq.fas.gz
-rw-r--r-- root/root 2086 2006-09-19 23:21 ./usr/share/doc/seaview/examples/dna.phy
-rw-r--r-- root/root 7617 2011-05-25 15:17 ./usr/share/doc/seaview/copyright
-rw-r--r-- root/root 40431 2011-01-29 01:24 ./usr/share/doc/seaview/seaview.html
-rw-r--r-- root/root 5333 2011-06-10 15:27 ./usr/share/doc/seaview/changelog.Debian.gz
-rw-r--r-- root/root 960 2010-01-06 22:16 ./usr/share/doc/seaview/references
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/icons/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/icons/hicolor/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/icons/hicolor/scalable/
drwxr-xr-x root/root 0 2011-06-10 15:29 ./usr/share/icons/hicolor/scalable/apps/
-rw-r--r-- root/root 5021 2008-11-23 21:57 ./usr/share/icons/hicolor/scalable/apps/seaview.svg
????????????????????????????????????????????????????????????????????????????????
? Post Build ?
????????????????????????????????????????????????????????????????????????????????
????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging /?CHROOT?/?BUILDDIR?
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
bsdmainutils* cdbs* debhelper* file* fontconfig-config* gettext*
gettext-base* groff-base* html2text* intltool-debian* libcroco3* libdrm2*
libexpat1* libexpat1-dev* libfltk1.1* libfltk1.1-dev* libfontconfig1*
libfontconfig1-dev* libfreetype6* libfreetype6-dev* libgl1-mesa-glx*
libglib2.0-0* libjpeg62* libjpeg62-dev* libmagic1* libpcre3* libpipeline1*
libpng12-0* libpng12-dev* libpopt0* libpthread-stubs0*
libpthread-stubs0-dev* libunistring0* libx11-6* libx11-data* libx11-dev*
libxau-dev* libxau6* libxcb1* libxcb1-dev* libxdamage1* libxdmcp-dev*
libxdmcp6* libxext-dev* libxext6* libxfixes3* libxft-dev* libxft2*
libxinerama1* libxml2* libxrender-dev* libxrender1* libxxf86vm1* man-db*
pkg-config* po-debconf* sbuild-build-depends-core-dummy*
sbuild-build-depends-seaview-dummy* ttf-dejavu-core* ucf* x11-common*
x11proto-core-dev* x11proto-input-dev* x11proto-kb-dev* x11proto-render-dev*
x11proto-xext-dev* xorg-sgml-doctools* xtrans-dev* zlib1g-dev*
0 upgraded, 0 newly installed, 69 to remove and 0 not upgraded.
After this operation, 70.9 MB disk space will be freed.
(Reading database ... 14861 files and directories currently installed.)
Removing sbuild-build-depends-seaview-dummy ...
Removing cdbs ...
Removing debhelper ...
Removing man-db ...
Purging configuration files for man-db ...
Removing bsdmainutils ...
Purging configuration files for bsdmainutils ...
Removing file ...
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Purging configuration files for libfltk1.1-dev ...
Removing libfltk1.1 ...
Purging configuration files for libfltk1.1 ...
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Purging configuration files for libxft2 ...
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Removing html2text ...
Purging configuration files for html2text ...
Removing libcroco3 ...
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Removing libgl1-mesa-glx ...
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Removing libfreetype6-dev ...
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Removing libjpeg62 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libpcre3 ...
Purging configuration files for libpcre3 ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
Removing libpng12-dev ...
Removing libpng12-0 ...
Purging configuration files for libpng12-0 ...
Removing libpopt0 ...
Purging configuration files for libpopt0 ...
Removing libxrender-dev ...
Removing libxext-dev ...
Removing libx11-dev ...
Removing libxcb1-dev ...
Removing libpthread-stubs0-dev ...
Removing libpthread-stubs0 ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxxf86vm1 ...
Purging configuration files for libxxf86vm1 ...
Removing libxrender1 ...
Purging configuration files for libxrender1 ...
Removing libxinerama1 ...
Purging configuration files for libxinerama1 ...
Removing libxdamage1 ...
Purging configuration files for libxdamage1 ...
Removing libxfixes3 ...
Purging configuration files for libxfixes3 ...
Removing libxext6 ...
Purging configuration files for libxext6 ...
Removing libx11-6 ...
Purging configuration files for libx11-6 ...
Removing libx11-data ...
Removing x11proto-xext-dev ...
Removing libxau-dev ...
Removing libxcb1 ...
Purging configuration files for libxcb1 ...
Removing libxau6 ...
Purging configuration files for libxau6 ...
Removing libxdmcp-dev ...
Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
Removing sbuild-build-depends-core-dummy ...
Removing ttf-dejavu-core ...
Removing ucf ...
Purging configuration files for ucf ...
Removing xtrans-dev ...
Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
Removing x11proto-render-dev ...
Removing x11proto-input-dev ...
Removing x11proto-core-dev ...
Removing x11proto-kb-dev ...
Removing xorg-sgml-doctools ...
Removing zlib1g-dev ...
????????????????????????????????????????????????????????????????????????????????
? Summary ?
????????????????????????????????????????????????????????????????????????????????
Architecture: amd64
Build-Space: 8256
Build-Time: 17
Distribution: unstable
Install-Time: 75
Job: seaview_4.2.12-1.dsc
Package: seaview
Package-Time: 96
Source-Version: 1:4.2.12-1
Space: 8256
Status: successful
Version: 1:4.2.12-1
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Finished at 20110610-1529
Build needed 00:01:36, 8256k disc space
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