[Debian-med-packaging] r-other-bio3d_1.1-3-1_amd64.changes ACCEPTED into unstable
Charles Plessy
plessy at debian.org
Fri Jun 24 06:17:36 UTC 2011
>
> Accepted:
> r-other-bio3d_1.1-3-1.debian.tar.gz
> to main/r/r-other-bio3d/r-other-bio3d_1.1-3-1.debian.tar.gz
> r-other-bio3d_1.1-3-1.dsc
> to main/r/r-other-bio3d/r-other-bio3d_1.1-3-1.dsc
> r-other-bio3d_1.1-3-1_all.deb
> to main/r/r-other-bio3d/r-other-bio3d_1.1-3-1_all.deb
> r-other-bio3d_1.1-3.orig.tar.gz
> to main/r/r-other-bio3d/r-other-bio3d_1.1-3.orig.tar.gz
Build logs attached.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.3 (11 Jun 2011) on anx191
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? r-other-bio3d 1.1-3-1 (amd64) 24 Jun 2011 14:42 ?
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Package: r-other-bio3d
Version: 1.1-3-1
Source Version: 1.1-3-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/r-other-bio3d-gBV1OF/r-other-bio3d-1.1-3' with '?PKGBUILDDIR?'
I: NOTICE: Log filtering will replace 'build/r-other-bio3d-gBV1OF' with '?BUILDDIR?'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-de38cc84-1de7-49bc-8a49-bf74086de3d5' with '?CHROOT?'
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? Update chroot ?
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Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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r-other-bio3d_1.1-3-1.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/?BUILDDIR?/resolver-nUNQoc/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
sbuild-build-depends-core-dummy is already the newest version.
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev
dpkg-deb: building package `sbuild-build-depends-r-other-bio3d-dummy' in `/?BUILDDIR?/resolver-oYKckC/apt_archive/sbuild-build-depends-r-other-bio3d-dummy.deb'.
OK
Reading package lists...
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? Install r-other-bio3d build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libxerces2-java libwrap0 libavalon-framework-java
libatk1.0-data libxalan2-java libdbus-1-3 libcap2 java-common libnspr4-0d
java-wrappers default-jre-headless libgnutls26 libcommons-logging-java
libtasn1-3 openjdk-6-jre-lib libcommons-math-java openjdk-6-jre-headless
libavahi-common-data libsam-java libgdk-pixbuf2.0-0 ant
libaccess-bridge-java-jni default-jdk libcups2 default-jre libxinerama1
libkrb5support0 libgif4 libcommons-net-java libbsf-java
libxml-commons-external-java tzdata-java libgcrypt11 libkeyutils1 libasound2
libflac8 libconcurrent-java libvorbisenc2 libjama-java libasyncns0
libjasper1 libswing-layout-java libxtst6 libavahi-client3
ca-certificates-java openssl libhamcrest-java libpulse0 libxdamage1
libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk libbatik-java libxcursor1
libjlibeps-java openjdk-6-jre libavahi-common3 liblog4j1.2-java
libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
libsqlite3-0 libgtk2.0-0 libssl1.0.0 libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
cdbs dpatch gfortran gfortran-4.6 libblas-dev libblas3gf libbz2-dev
libgfortran3 libjpeg62-dev liblapack-dev liblapack3gf libncurses5-dev
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpng12-dev
libreadline-dev libreadline6-dev libxss1 libxt6 r-base-core r-base-dev
tcl8.5 tk8.5 xdg-utils zip zlib1g-dev
Suggested packages:
devscripts curl gfortran-multilib gfortran-doc gfortran-4.6-multilib
gfortran-4.6-doc libgfortran3-dbg ncurses-doc ess r-doc-info r-doc-pdf
r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils r-recommended r-doc-html xterm x-terminal-emulator
libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs dpatch gfortran gfortran-4.6 libblas-dev libblas3gf libbz2-dev
libgfortran3 libjpeg62-dev liblapack-dev liblapack3gf libncurses5-dev
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpng12-dev
libreadline-dev libreadline6-dev libxss1 libxt6 r-base-core r-base-dev
sbuild-build-depends-r-other-bio3d-dummy tcl8.5 tk8.5 xdg-utils zip
zlib1g-dev
0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
Need to get 21.0 MB/36.5 MB of archives.
After this operation, 87.4 MB of additional disk space will be used.
Get:1 http://ftp.jp.debian.org/debian/ sid/main gfortran-4.6 amd64 4.6.0-14 [5548 kB]
Get:2 http://ftp.jp.debian.org/debian/ sid/main gfortran amd64 4:4.6.0-6 [1126 B]
Get:3 http://ftp.jp.debian.org/debian/ sid/main zip amd64 3.0-4 [334 kB]
Get:4 http://ftp.jp.debian.org/debian/ sid/main r-base-core amd64 2.13.0-4 [15.1 MB]
Get:5 http://ftp.jp.debian.org/debian/ sid/main r-base-dev all 2.13.0-4 [3486 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 21.0 MB in 2s (9727 kB/s)
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(Reading database ... 16391 files and directories currently installed.)
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Processing triggers for man-db ...
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Setting up cdbs (0.4.94) ...
Setting up dpatch (2.0.31) ...
Setting up gfortran-4.6 (4.6.0-14) ...
Setting up gfortran (4:4.6.0-6) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
Setting up libjpeg62-dev (6b1-1) ...
Setting up liblapack3gf (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcrecpp0 (8.12-3) ...
Setting up libpcre3-dev (8.12-3) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
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Setting up libreadline6-dev (6.2-2) ...
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Setting up libxss1 (1:1.2.1-1) ...
Setting up zip (3.0-4) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
Setting up tcl8.5 (8.5.9-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.9-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
Setting up r-base-core (2.13.0-4) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-4) ...
Setting up sbuild-build-depends-r-other-bio3d-dummy (0.invalid.0) ...
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? Build environment ?
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Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-14 gcc-4.6_4.6.0-14 libc6-dev_2.13-7 libstdc++6_4.6.0-14 libstdc++6-4.6-dev_4.6.0-14 linux-libc-dev_2.6.39-2
Package versions: ant_1.8.2-2 apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-2 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110421 ca-certificates-java_20110531 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.6_4.6.0-14 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.2 default-jdk_1:1.6-40 default-jre_1:1.6-40 default-jre-headless_1:1.6-40 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-6 g++-4.6_4.6.0-14 gcc_4:4.6.0-6 gcc-4.6_4.6.0-14 gcc-4.6-base_4.6.0-14 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.0-14 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 java-common_0.40 java-wrappers_0.1.22 junit4_4.8.2-2 libaccess-bridge-java_1.26.2-5 libaccess-bridge-java-jni_1.26.2-5 libacl1_2.2.51-1 libasound2_1.0.23-4 libasyncns0_0.8-2 libatk1.0-0_2.0.1-1 libatk1.0-data_2.0.1-1 libattr1_1:2.4.44-3 libavahi-client3_0.6.30-3 libavahi-common-data_0.6.30-3 libavahi-common3_0.6.30-3 libavalon-framework-java_4.2.0-7 libbatik-java_1.7-7 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-2 libbsf-java_1:2.4.0-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-7 libc-dev-bin_2.13-7 libc6_2.13-7 libc6-dev_2.13-7 libcairo2_1.10.2-6 libcap2_1:2.21-1 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcommons-io-java_1.4-3 libcommons-logging-java_1.1.1-8 libcommons-math-java_2.2-1 libcommons-net-java_1.4.1-2 libconcurrent-java_1.3.4-4 libcroco3_0.6.2-1 libcups2_1.4.6-9 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdbus-1-3_1.4.12-2 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-2 libexpat1_2.0.1-7 libflac8_1.2.1-3 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-14 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgdk-pixbuf2.0-0_2.23.3-3 libgfortran3_4.6.0-14 libgif4_4.1.6-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-14 libgpg-error0_1.10-0.3 libgssapi-krb5-2_1.9.1+dfsg-1+b1 libgtk2.0-0_2.24.4-3 libgtk2.0-common_2.24.4-3 libhamcrest-java_1.1-8 libice6_2:1.0.7-2 libjama-java_1.0.2-3 libjargs-java_1.0.0-3 libjasper1_1.900.1-7+b1 libjaxp1.3-java_1.3.05-1 libjlibeps-java_0.1+2-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libk5crypto3_1.9.1+dfsg-1+b1 libkeyutils1_1.4-4 libkrb5-3_1.9.1+dfsg-1+b1 libkrb5support0_1.9.1+dfsg-1+b1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblcms1_1.18.dfsg-1.2+b4 liblocale-gettext-perl_1.05-6+b1 liblog4j1.2-java_1.2.15-11 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-2 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libnspr4-0d_4.8.8-2 libnss3-1d_3.12.10-1 libogg0_1.2.2~dfsg-1 liboro-java_2.0.8a-7 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpulse0_0.9.21-4 libpwl5_0.11.2-3 libquadmath0_4.6.0-14 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsam-java_1.46-1 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libsndfile1_1.0.24-1 libsqlite3-0_3.7.6.3-1 libss2_1.41.12-4 libssl1.0.0_1.0.0d-3 libstdc++6_4.6.0-14 libstdc++6-4.6-dev_4.6.0-14 libswing-layout-java_1.0.4-1 libswitch-perl_2.16-1 libtasn1-3_2.9-4 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.19.1-2 libvorbis0a_1.3.2-1 libvorbisenc2_1.3.2-1 libwrap0_7.6.q-21 libx11-6_2:1.4.3-2 libx11-data_2:1.4.3-2 libxalan2-java_2.7.1-5 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.11-3 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.0-3 libxerces2-java_2.9.1-4.1 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft2_2.2.0-3 libxi6_2:1.4.3-3 libxinerama1_2:1.1.1-3 libxml-commons-external-java_1.3.05-2 libxml2_2.7.8.dfsg-3 libxrandr2_2:1.3.1-2 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 libxtst6_2:1.2.0-1 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.19.1-2 multiarch-support_2.13-7 ncurses-base_5.9-1 ncurses-bin_5.9-1 openjdk-6-jdk_6b18-1.8.7-5 openjdk-6-jre_6b18-1.8.7-5 openjdk-6-jre-headless_6b18-1.8.7-5 openjdk-6-jre-lib_6b18-1.8.7-5 openssl_1.0.0d-3 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-4 r-base-dev_2.13.0-4 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-other-bio3d-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 shared-mime-info_0.90-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 tzdata-java_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.19.1-2 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
????????????????????????????????????????????????????????????????????????????????
? Build ?
????????????????????????????????????????????????????????????????????????????????
Unpack source
?????????????
dpkg-source: warning: extracting unsigned source package (r-other-bio3d_1.1-3-1.dsc)
dpkg-source: info: extracting r-other-bio3d in r-other-bio3d-1.1-3
dpkg-source: info: unpacking r-other-bio3d_1.1-3.orig.tar.gz
dpkg-source: info: unpacking r-other-bio3d_1.1-3-1.debian.tar.gz
Check disc space
????????????????
Sufficient free space for build
User Environment
????????????????
HOME=/nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
SCHROOT_SESSION_ID=sid-amd64-sbuild-de38cc84-1de7-49bc-8a49-bf74086de3d5
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
USER=charles
USERNAME=charles
dpkg-buildpackage
?????????????????
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-other-bio3d
dpkg-buildpackage: source version 1.1-3-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-other-bio3d-1.1-3
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/?PKGBUILDDIR?'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/?PKGBUILDDIR?'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "reverse-patches" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
dpkg-source -b r-other-bio3d-1.1-3
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building r-other-bio3d using existing ./r-other-bio3d_1.1-3.orig.tar.gz
dpkg-source: info: building r-other-bio3d in r-other-bio3d_1.1-3-1.debian.tar.gz
dpkg-source: info: building r-other-bio3d in r-other-bio3d_1.1-3-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/?PKGBUILDDIR?'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/?PKGBUILDDIR?'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/?PKGBUILDDIR?'
make[1]: Nothing to be done for `update-config'.
make[1]: Leaving directory `/?PKGBUILDDIR?'
fakeroot debian/rules binary
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /?PKGBUILDDIR?/debian/r-other-bio3d/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l /?PKGBUILDDIR?/debian/r-other-bio3d/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'bio3d' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (bio3d)
rm -vf /?PKGBUILDDIR?/debian/r-other-bio3d/usr/lib/R/site-library/R.css \
/?PKGBUILDDIR?/debian/r-other-bio3d/usr/lib/R/site-library/bio3d/COPYING \
/?PKGBUILDDIR?/debian/r-other-bio3d/usr/lib/R/site-library/bio3d/LICENSE.txt
if test -f debian/overrides; then \
install -d /?PKGBUILDDIR?/debian/r-other-bio3d/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/?PKGBUILDDIR?/debian/r-other-bio3d/usr/share/lintian/overrides/r-other-bio3d; \
fi
Adding cdbs dependencies to debian/r-other-bio3d.substvars
dh_installdirs -pr-other-bio3d
echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-other-bio3d.substvars
dh_installdocs -pr-other-bio3d
dh_installexamples -pr-other-bio3d
dh_installman -pr-other-bio3d
dh_installinfo -pr-other-bio3d
dh_installmenu -pr-other-bio3d
dh_installcron -pr-other-bio3d
dh_installinit -pr-other-bio3d
dh_installdebconf -pr-other-bio3d
dh_installemacsen -pr-other-bio3d
dh_installcatalogs -pr-other-bio3d
dh_installpam -pr-other-bio3d
dh_installlogrotate -pr-other-bio3d
dh_installlogcheck -pr-other-bio3d
dh_installchangelogs -pr-other-bio3d
dh_installudev -pr-other-bio3d
dh_lintian -pr-other-bio3d
dh_bugfiles -pr-other-bio3d
dh_install -pr-other-bio3d
dh_link -pr-other-bio3d
dh_installmime -pr-other-bio3d
dh_installgsettings -pr-other-bio3d
dh_strip -pr-other-bio3d
dh_compress -pr-other-bio3d
dh_fixperms -pr-other-bio3d
dh_makeshlibs -pr-other-bio3d
dh_installdeb -pr-other-bio3d
dh_perl -pr-other-bio3d
dh_shlibdeps -pr-other-bio3d
dh_gencontrol -pr-other-bio3d
dh_md5sums -pr-other-bio3d
dh_builddeb -pr-other-bio3d
dpkg-deb: building package `r-other-bio3d' in `../r-other-bio3d_1.1-3-1_all.deb'.
dpkg-genchanges >../r-other-bio3d_1.1-3-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build r-other-bio3d-1.1-3
dpkg-buildpackage: full upload (original source is included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110624-1443
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
r-other-bio3d_1.1-3-1_amd64.changes:
????????????????????????????????????
Format: 1.8
Date: Fri, 24 Jun 2011 14:40:42 +0900
Source: r-other-bio3d
Binary: r-other-bio3d
Architecture: source all
Version: 1.1-3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-other-bio3d - GNU R package for biological structure analysis
Changes:
r-other-bio3d (1.1-3-1) unstable; urgency=low
.
* New upstream release.
* Incremented Standards-Version to reflect compliance with Policy 3.9.2.
(debian/control, no changes needed)
* Corrected Vcs-* URLs (debian/control).
Checksums-Sha1:
220c054985c740ad78a28b858b9d2c0bdc08db17 1189 r-other-bio3d_1.1-3-1.dsc
c953b8d124d695555c3b85350d90666ce10593e9 9189636 r-other-bio3d_1.1-3.orig.tar.gz
87ad81ab5a5a65ab6b16ba03f136e17499027182 3867 r-other-bio3d_1.1-3-1.debian.tar.gz
3bfab3e584096cf4cf5e1d72f6f6671ea4ad71d4 9447066 r-other-bio3d_1.1-3-1_all.deb
Checksums-Sha256:
2bc68f33dd887dcce03042d1b49d9b30da5c97331c8a97a92362b471e7bbdaab 1189 r-other-bio3d_1.1-3-1.dsc
06c5ea1294b9b2c2ead5b3926b151f67011698451454bb25fd135e37b1f5333a 9189636 r-other-bio3d_1.1-3.orig.tar.gz
deb5b54058beb97e52fa48ce67c3da0beba90e3564a989d9c0983ececfec9b86 3867 r-other-bio3d_1.1-3-1.debian.tar.gz
74824d7692a991a06b8febbe7e68b92267fb05789abff126079acc06740a8fd8 9447066 r-other-bio3d_1.1-3-1_all.deb
Files:
67c7491a984b5fe95a581483a83a273e 1189 gnu-r optional r-other-bio3d_1.1-3-1.dsc
fc1a1a05d307d5310214d250fa144c9f 9189636 gnu-r optional r-other-bio3d_1.1-3.orig.tar.gz
fcbc18ff04fe8505906ffa3a87b47485 3867 gnu-r optional r-other-bio3d_1.1-3-1.debian.tar.gz
3ee2a99341fc6e3e2b08247e98f896fa 9447066 gnu-r optional r-other-bio3d_1.1-3-1_all.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
r-other-bio3d_1.1-3-1_all.deb
?????????????????????????????
new debian package, version 2.0.
size 9447066 bytes: control archive= 3203 bytes.
1041 bytes, 20 lines control
6962 bytes, 85 lines md5sums
Package: r-other-bio3d
Version: 1.1-3-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 17720
Depends: r-base-core (>= 2.13.0~)
Suggests: r-cran-ncdf, r-cran-bigmemory, r-cran-rocr, mafft
Section: gnu-r
Priority: optional
Homepage: http://mccammon.ucsd.edu/~bgrant/bio3d/
Description: GNU R package for biological structure analysis
The bio3d package contains utilities to process, organize and explore
protein structure, sequence and dynamics data. Features include the
ability to read and write structure, sequence and dynamic trajectory
data, perform atom summaries, atom selection, re-orientation,
superposition, rigid core identification, clustering, torsion analysis,
distance matrix analysis, structure and sequence conservation analysis,
and principal component analysis (PCA). In addition, various utility
functions are provided to enable the statistical and graphical power of
the R environment to work with biological sequence and structural data.
drwxr-xr-x root/root 0 2011-06-24 14:43 ./
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/
-rw-r--r-- root/root 209876 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1vfwa_.ent
-rw-r--r-- root/root 1077 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/kif1a.fa
-rw-r--r-- root/root 227698 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d3kin.2.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1yrs_b.ent
-rw-r--r-- root/root 194360 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1x88_b.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fky_a.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fky_b.ent
-rw-r--r-- root/root 220081 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1cz7a_.ent
-rw-r--r-- root/root 183198 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1t5c_b.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fl6_b.ent
-rw-r--r-- root/root 23453 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/kinesin_xray.fa
-rw-r--r-- root/root 231421 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2ncda_.ent
-rw-r--r-- root/root 213520 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1q0bb_.ent
-rw-r--r-- root/root 193176 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1x88_a.ent
-rw-r--r-- root/root 216193 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1ii6a_.ent
-rw-r--r-- root/root 183038 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fme_a.ent
-rw-r--r-- root/root 862332 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/hivp.dcd
-rw-r--r-- root/root 214412 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1vfza_.ent
-rw-r--r-- root/root 229237 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d3kin.1.ent
-rw-r--r-- root/root 200479 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1f9va_.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fl6_a.ent
-rw-r--r-- root/root 201057 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d3kar__.ent
-rw-r--r-- root/root 189340 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1t5c_a.ent
-rw-r--r-- root/root 15250 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/hivp.pdb
-rw-r--r-- root/root 219757 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1goja_.ent
-rw-r--r-- root/root 216112 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1mkja_.ent
-rw-r--r-- root/root 219838 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1i6ia_.ent
-rw-r--r-- root/root 234418 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1cz7c_.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1yrs_a.ent
-rw-r--r-- root/root 234835 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1n6ma_.ent
-rw-r--r-- root/root 248103 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/1bg2.pdb
-rw-r--r-- root/root 198373 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1f9ua_.ent
-rw-r--r-- root/root 194323 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1f9ta_.ent
-rw-r--r-- root/root 217732 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1cz7b_.ent
-rw-r--r-- root/root 214007 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1v8ja_.ent
-rw-r--r-- root/root 192622 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1f9wb_.ent
-rw-r--r-- root/root 187034 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fme_b.ent
-rw-r--r-- root/root 218059 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2kin.1.ent
-rw-r--r-- root/root 211009 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1q0ba_.ent
-rw-r--r-- root/root 205176 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1bg2__.ent
-rw-r--r-- root/root 215869 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1i5sa_.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fl2_b.ent
-rw-r--r-- root/root 213521 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1v8ka_.ent
-rw-r--r-- root/root 207284 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1vfxa_.ent
-rw-r--r-- root/root 220811 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1sdma_.ent
-rw-r--r-- root/root 215638 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1n6mb_.ent
-rw-r--r-- root/root 213196 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1ii6b_.ent
-rw-r--r-- root/root 235228 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1cz7d_.ent
-rw-r--r-- root/root 204448 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1ry6a_.ent
-rw-r--r-- root/root 191992 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d2fl2_a.ent
-rw-r--r-- root/root 47600 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/hivp_xray.fa
-rw-r--r-- root/root 206717 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1vfva_.ent
-rw-r--r-- root/root 192622 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/examples/d1f9wa_.ent
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/R/
-rw-r--r-- root/root 384 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/R/bio3d
-rw-r--r-- root/root 1278 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/R/bio3d.rdx
-rw-r--r-- root/root 70235 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/R/bio3d.rdb
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/help/
-rw-r--r-- root/root 1777 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/help/AnIndex
-rw-r--r-- root/root 687 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/help/aliases.rds
-rw-r--r-- root/root 1752 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/help/bio3d.rdx
-rw-r--r-- root/root 645 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/help/paths.rds
-rw-r--r-- root/root 270605 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/help/bio3d.rdb
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/
-rw-r--r-- root/root 1393 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/similarity.mat
-rw-r--r-- root/root 1850 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/custom.mat
-rw-r--r-- root/root 2700 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/pam30.mat
-rw-r--r-- root/root 1778 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/properties.mat
-rw-r--r-- root/root 594 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/emboss_properties.mat
-rw-r--r-- root/root 2123 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/blosum62.mat
-rw-r--r-- root/root 2046 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/matrices/bio3d.mat
-rw-r--r-- root/root 672 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/CITATION
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/data/
-rw-r--r-- root/root 788295 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/data/aa.index.rda
-rw-r--r-- root/root 5776309 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/data/kinesin.RData
-rw-r--r-- root/root 908 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/NAMESPACE
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/html/
-rw-r--r-- root/root 11153 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/html/00Index.html
-rw-r--r-- root/root 1179 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/html/R.css
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/Meta/
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-rw-r--r-- root/root 128 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/Meta/data.rds
-rw-r--r-- root/root 1081 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/Meta/links.rds
-rw-r--r-- root/root 936 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/Meta/package.rds
-rw-r--r-- root/root 1146 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/DESCRIPTION
-rw-r--r-- root/root 4620 2011-06-24 14:43 ./usr/lib/R/site-library/bio3d/INDEX
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/share/
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-06-24 14:43 ./usr/share/doc/r-other-bio3d/
-rw-r--r-- root/root 1532 2011-06-24 14:37 ./usr/share/doc/r-other-bio3d/copyright
-rw-r--r-- root/root 1188 2011-06-24 14:40 ./usr/share/doc/r-other-bio3d/changelog.Debian.gz
-rw-r--r-- root/root 653 2011-03-10 23:34 ./usr/share/doc/r-other-bio3d/README.Debian
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? Post Build ?
????????????????????????????????????????????????????????????????????????????????
lintian
???????
W: r-other-bio3d source: unused-build-dependency-on-cdbs
P: r-other-bio3d: no-upstream-changelog
I: Lintian run was successful.
????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging /?BUILDDIR?
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libxerces2-java libwrap0 libavalon-framework-java
libatk1.0-data libxalan2-java libdbus-1-3 libcap2 java-common libnspr4-0d
java-wrappers default-jre-headless libgnutls26 libcommons-logging-java
libtasn1-3 openjdk-6-jre-lib libcommons-math-java openjdk-6-jre-headless
libavahi-common-data libsam-java libgdk-pixbuf2.0-0 ant
libaccess-bridge-java-jni default-jdk libcups2 default-jre libxinerama1
libkrb5support0 libgif4 libcommons-net-java libbsf-java
libxml-commons-external-java tzdata-java libgcrypt11 libkeyutils1 libasound2
libflac8 libconcurrent-java libvorbisenc2 libjama-java libasyncns0
libjasper1 libswing-layout-java libxtst6 libavahi-client3
ca-certificates-java openssl libhamcrest-java libpulse0 libxdamage1
libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk libbatik-java libxcursor1
libjlibeps-java openjdk-6-jre libavahi-common3 liblog4j1.2-java
libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
libsqlite3-0 libgtk2.0-0 libssl1.0.0 libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
cdbs* dpatch* gfortran* gfortran-4.6* libblas-dev* libblas3gf* libbz2-dev*
libgfortran3* libjpeg62-dev* liblapack-dev* liblapack3gf* libncurses5-dev*
libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpng12-dev*
libreadline-dev* libreadline6-dev* libxss1* libxt6* r-base-core* r-base-dev*
sbuild-build-depends-r-other-bio3d-dummy* tcl8.5* tk8.5* xdg-utils* zip*
zlib1g-dev*
0 upgraded, 0 newly installed, 29 to remove and 0 not upgraded.
After this operation, 87.4 MB disk space will be freed.
(Reading database ... 18416 files and directories currently installed.)
Removing sbuild-build-depends-r-other-bio3d-dummy ...
Removing r-base-dev ...
Removing cdbs ...
Removing dpatch ...
Purging configuration files for dpatch ...
Removing gfortran ...
Removing gfortran-4.6 ...
Removing liblapack-dev ...
Removing libblas-dev ...
Removing r-base-core ...
Purging configuration files for r-base-core ...
Removing liblapack3gf ...
Purging configuration files for liblapack3gf ...
Removing libblas3gf ...
Purging configuration files for libblas3gf ...
Removing libbz2-dev ...
Removing libgfortran3 ...
Purging configuration files for libgfortran3 ...
Removing libjpeg62-dev ...
Removing libreadline-dev ...
Removing libreadline6-dev ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
Purging configuration files for libpaper1 ...
Removing libpcre3-dev ...
Removing libpcrecpp0 ...
Purging configuration files for libpcrecpp0 ...
Removing libpng12-dev ...
Removing tk8.5 ...
Purging configuration files for tk8.5 ...
Removing libxss1 ...
Purging configuration files for libxss1 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
Processing triggers for man-db ...
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? Summary ?
????????????????????????????????????????????????????????????????????????????????
Architecture: amd64
Build-Space: 54020
Build-Time: 11
Distribution: unstable
Install-Time: 41
Job: r-other-bio3d_1.1-3-1.dsc
Lintian: pass
Package: r-other-bio3d
Package-Time: 54
Source-Version: 1.1-3-1
Space: 54020
Status: successful
Version: 1.1-3-1
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Finished at 20110624-1443
Build needed 00:00:54, 54020k disc space
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