[Debian-med-packaging] kalign_2.03+20110620-1_amd64.changes ACCEPTED into unstable
Charles Plessy
plessy at debian.org
Sat Jun 25 14:17:51 UTC 2011
Le Sat, Jun 25, 2011 at 08:48:05AM +0000, Debian FTP Masters a écrit :
>
>
>
> Accepted:
> kalign_2.03+20110620-1.diff.gz
> to main/k/kalign/kalign_2.03+20110620-1.diff.gz
> kalign_2.03+20110620-1.dsc
> to main/k/kalign/kalign_2.03+20110620-1.dsc
> kalign_2.03+20110620-1_amd64.deb
> to main/k/kalign/kalign_2.03+20110620-1_amd64.deb
> kalign_2.03+20110620.orig.tar.gz
> to main/k/kalign/kalign_2.03+20110620.orig.tar.gz
Build logs attached…
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
-------------- next part --------------
sbuild (Debian sbuild) 0.62.3 (11 Jun 2011) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
║ kalign 2.03+20110620-1 (amd64) 25 juin 2011 17:25 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: kalign
Version: 2.03+20110620-1
Source Version: 2.03+20110620-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/kalign-GnSv2o/kalign-2.03+20110620' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/kalign-GnSv2o' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-8786a8d0-dc1f-4215-a2e7-b7cac8ab92c3' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Hit ftp://ftp.jaist.ac.jp sid InRelease
Hit ftp://ftp.jaist.ac.jp sid/main Sources/DiffIndex
Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
Hit ftp://ftp.jaist.ac.jp sid/main TranslationIndex
Hit ftp://ftp.jaist.ac.jp sid/main Translation-fr
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Local sources
─────────────
kalign_2.03+20110620-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-zcDhkV/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/716 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously deselected package sbuild-build-depends-core-dummy.
(Reading database ... 10824 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8)
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8)
dpkg-deb: building package `sbuild-build-depends-kalign-dummy' in `/«BUILDDIR»/resolver-tOvYib/apt_archive/sbuild-build-depends-kalign-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install kalign build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf sbuild-build-depends-kalign-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/9210 kB of archives.
After this operation, 27.0 MB of additional disk space will be used.
Selecting previously deselected package libpipeline1.
(Reading database ... 10824 files and directories currently installed.)
Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ...
Selecting previously deselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ...
Selecting previously deselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
Selecting previously deselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
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Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-3_amd64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
Unpacking debhelper (from .../debhelper_8.9.0_all.deb) ...
Selecting previously deselected package sbuild-build-depends-kalign-dummy.
Unpacking sbuild-build-depends-kalign-dummy (from .../sbuild-build-depends-kalign-dummy.deb) ...
Setting up libpipeline1 (1.2.0-3) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-3) ...
Setting up html2text (1.3.2a-15) ...
Setting up libglib2.0-0 (2.28.6-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.9.0) ...
Setting up sbuild-build-depends-kalign-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-14 gcc-4.6_4.6.0-14 libc6-dev_2.13-7 libstdc++6_4.6.0-14 libstdc++6-4.6-dev_4.6.0-14 linux-libc-dev_2.6.39-2
Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-2 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.6_4.6.0-14 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.0 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 g++_4:4.6.0-6 g++-4.6_4.6.0-14 gcc_4:4.6.0-6 gcc-4.6_4.6.0-14 gcc-4.6-base_4.6.0-14 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-1 libattr1_1:2.4.46-1 libblkid1_2.19.1-2 libbz2-1.0_1.0.5-6 libc-bin_2.13-7 libc-dev-bin_2.13-7 libc6_2.13-7 libc6-dev_2.13-7 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdb4.7_4.7.25-20 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-14 libgdbm3_1.8.3-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-14 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-2 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-3 libpipeline1_1.2.0-3 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-14 libreadline6_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libss2_1.41.12-4 libstdc++6_4.6.0-14 libstdc++6-4.6-dev_4.6.0-14 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.19.1-2 libxml2_2.7.8.dfsg-3 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.19.1-2 multiarch-support_2.13-7 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kalign-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tzdata_2011g-1 util-linux_2.19.1-2 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
dpkg-source: warning: extracting unsigned source package (kalign_2.03+20110620-1.dsc)
dpkg-source: info: extracting kalign in kalign-2.03+20110620
dpkg-source: info: unpacking kalign_2.03+20110620.orig.tar.gz
dpkg-source: info: applying kalign_2.03+20110620-1.diff.gz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
HOME=/nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
SCHROOT_SESSION_ID=sid-amd64-sbuild-8786a8d0-dc1f-4215-a2e7-b7cac8ab92c3
SCHROOT_UID=1000
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
USER=charles
USERNAME=charles
dpkg-buildpackage
─────────────────
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package kalign
dpkg-buildpackage: source version 1:2.03+20110620-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build kalign-2.03+20110620
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
dh_clean
dpkg-source -b kalign-2.03+20110620
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
dpkg-source: info: building kalign using existing kalign_2.03+20110620.orig.tar.gz
dpkg-source: info: building kalign in kalign_2.03+20110620-1.diff.gz
dpkg-source: info: building kalign in kalign_2.03+20110620-1.dsc
debian/rules build
dh build
dh_testdir
dh_auto_configure
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for an ANSI C-conforming const... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
dh_auto_build
make[1]: Entering directory `/«BUILDDIR»/kalign-2.03+20110620'
gcc -O9 -Wall -c kalign2_distance_calculation.c
gcc -O9 -Wall -c kalign2_dp.c
gcc -O9 -Wall -c kalign2_input.c
gcc -O9 -Wall -c kalign2_main.c
gcc -O9 -Wall -c kalign2_mem.c
gcc -O9 -Wall -c kalign2_inferface.c
gcc -O9 -Wall -c kalign2_misc.c
gcc -O9 -Wall -c kalign2_tree.c
gcc -O9 -Wall -c kalign2_profile.c
gcc -O9 -Wall -c kalign2_alignment_types.c
gcc -O9 -Wall -c kalign2_feature.c
kalign2_feature.c: In function 'feature_hirsch_align_two_pp_vector':
kalign2_feature.c:436:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
gcc -O9 -Wall -c kalign2_hirschberg.c
kalign2_hirschberg.c: In function 'hirsch_align_two_ss_vector':
kalign2_hirschberg.c:335:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
kalign2_hirschberg.c: In function 'hirsch_align_two_ps_vector':
kalign2_hirschberg.c:908:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
kalign2_hirschberg.c: In function 'hirsch_align_two_pp_vector':
kalign2_hirschberg.c:1501:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
gcc -O9 -Wall -c kalign2_advanced_gaps.c
kalign2_advanced_gaps.c: In function 'advanced_hirsch_align_two_pp_vector':
kalign2_advanced_gaps.c:427:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
gcc -O9 -Wall -c kalign2_hirschberg_dna.c
kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ss_vector':
kalign2_hirschberg_dna.c:327:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ps_vector':
kalign2_hirschberg_dna.c:875:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_pp_vector':
kalign2_hirschberg_dna.c:1444:8: warning: variable 'j' set but not used [-Wunused-but-set-variable]
gcc -O9 -Wall -c kalign2_output.c
gcc -O9 -Wall -c kalign2_string_matching.c
gcc -O9 -Wall -c kalign2_profile_alignment.c
gcc -O9 -Wall kalign2_distance_calculation.o kalign2_dp.o kalign2_input.o kalign2_main.o kalign2_mem.o kalign2_inferface.o kalign2_misc.o kalign2_tree.o kalign2_profile.o kalign2_alignment_types.o kalign2_feature.o kalign2_hirschberg.o kalign2_advanced_gaps.o kalign2_hirschberg_dna.o kalign2_output.o kalign2_string_matching.o kalign2_profile_alignment.o -o kalign
make[1]: Leaving directory `/«BUILDDIR»/kalign-2.03+20110620'
dh_auto_test
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_installdirs
debian/rules override_dh_auto_install
make[1]: Entering directory `/«BUILDDIR»/kalign-2.03+20110620'
install -D -m u=rw,go=r debian/kalign.bash_completion /«BUILDDIR»/kalign-2.03+20110620/debian/kalign/etc/bash_completion.d/kalign
make[1]: Leaving directory `/«BUILDDIR»/kalign-2.03+20110620'
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_installcatalogs
dh_installcron
dh_installdebconf
dh_installemacsen
dh_installifupdown
dh_installinfo
dh_installinit
dh_installmenu
dh_installmime
dh_installmodules
dh_installlogcheck
dh_installlogrotate
dh_installpam
dh_installppp
dh_installudev
dh_installwm
dh_installxfonts
dh_installgsettings
dh_bugfiles
dh_ucf
dh_lintian
dh_gconf
dh_icons
dh_perl
dh_usrlocal
dh_link
dh_compress
dh_fixperms
dh_strip
dh_makeshlibs
dh_shlibdeps
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package `kalign' in `../kalign_2.03+20110620-1_amd64.deb'.
dpkg-genchanges >../kalign_2.03+20110620-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build kalign-2.03+20110620
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20110625-1726
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
kalign_2.03+20110620-1_amd64.changes:
─────────────────────────────────────
Format: 1.8
Date: Sat, 25 Jun 2011 17:23:01 +0900
Source: kalign
Binary: kalign
Architecture: source amd64
Version: 1:2.03+20110620-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
kalign - Global and progressive multiple sequence alignment
Changes:
kalign (1:2.03+20110620-1) unstable; urgency=low
.
* New upstream release.
Using 2.04 as a version number was a mistake of mine, it should have been
called 2.03+20081031 as Upstream sometimes updates the source archive
‘current.tar.gz’ without incrementing the version number.
* Collected information about Upstream in ‘debian/upstream-metadata.yaml’.
* Using Debhelper 8 (debian/compat, debian/control).
* Corrected VCS information in debian/control.
* Enhances: bioperl-run, that has a kalign wrapper (debian/control).
* Incremented Standards-Version to reflect conformance with Policy 3.9.2.
(debian/control, no changes needed).
Checksums-Sha1:
7cdc976efa2bb65205d39b712632825748f3d96d 1069 kalign_2.03+20110620-1.dsc
8bf4c1afe90e8d529840c0906c7b740299fe4041 111456 kalign_2.03+20110620.orig.tar.gz
d49214ebd6ce37efed0df336b6af13b2c392a4e5 5386 kalign_2.03+20110620-1.diff.gz
b57776cae5cf2f2ab27a4b900aec44ce166c966e 94974 kalign_2.03+20110620-1_amd64.deb
Checksums-Sha256:
bfe7026c001adcb5d417a674205df2fd82f36f37f4cc099fd573c92996a2b22b 1069 kalign_2.03+20110620-1.dsc
8cf20ac4e1807dc642e7ffba8f42a117313beccaee4f87c5555d53a2eeac4cbb 111456 kalign_2.03+20110620.orig.tar.gz
e6135691870faf9f272ffdc231a30f1fbbb0d208ebc123379e49160215fb1e75 5386 kalign_2.03+20110620-1.diff.gz
8738376bcadc26616c2c2e81e23bb247bab6435d0da8ec4f2b1319d705840ecd 94974 kalign_2.03+20110620-1_amd64.deb
Files:
c60a23771285eb8936dbc8235afa1ba8 1069 science optional kalign_2.03+20110620-1.dsc
bde173eb65e617ed73cd78bad7f881a3 111456 science optional kalign_2.03+20110620.orig.tar.gz
d641affc0142c37603967872ba097769 5386 science optional kalign_2.03+20110620-1.diff.gz
526074d98f5d9c6857002922bcc62ed6 94974 science optional kalign_2.03+20110620-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
kalign_2.03+20110620-1_amd64.deb
────────────────────────────────
new debian package, version 2.0.
size 94974 bytes: control archive= 853 bytes.
30 bytes, 1 lines conffiles
773 bytes, 18 lines control
316 bytes, 5 lines md5sums
Package: kalign
Version: 1:2.03+20110620-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 268
Depends: libc6 (>= 2.3)
Enhances: bioperl-run, t-coffee
Section: science
Priority: optional
Homepage: http://msa.cgb.ki.se
Description: Global and progressive multiple sequence alignment
Kalign is a command line tool to perform multiple alignment of
biological sequences. It employs the Muth-Manber string-matching
algorithm, to improve both the accuracy and speed of the alignment.
It uses global, progressive alignment approach, enriched by employing
an approximate string-matching algorithm to calculate sequence
distances and by incorporating local matches into the otherwise global
alignment.
drwxr-xr-x root/root 0 2011-06-25 17:26 ./
drwxr-xr-x root/root 0 2011-06-25 17:26 ./etc/
drwxr-xr-x root/root 0 2011-06-25 17:26 ./etc/bash_completion.d/
-rw-r--r-- root/root 1392 2011-06-25 17:26 ./etc/bash_completion.d/kalign
drwxr-xr-x root/root 0 2011-06-25 17:26 ./usr/
drwxr-xr-x root/root 0 2011-06-25 17:26 ./usr/share/
drwxr-xr-x root/root 0 2011-06-25 17:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-06-25 17:26 ./usr/share/doc/kalign/
-rw-r--r-- root/root 1322 2011-06-20 23:26 ./usr/share/doc/kalign/README
-rw-r--r-- root/root 1881 2011-06-25 17:26 ./usr/share/doc/kalign/copyright
-rw-r--r-- root/root 1290 2011-06-25 17:26 ./usr/share/doc/kalign/changelog.Debian.gz
drwxr-xr-x root/root 0 2011-06-25 17:26 ./usr/share/man/
drwxr-xr-x root/root 0 2011-06-25 17:26 ./usr/share/man/man1/
-rw-r--r-- root/root 1767 2011-06-25 17:26 ./usr/share/man/man1/kalign.1.gz
drwxr-xr-x root/root 0 2011-06-25 17:26 ./usr/bin/
-rwxr-xr-x root/root 197192 2011-06-25 17:26 ./usr/bin/kalign
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
lintian
───────
I: kalign source: missing-debian-source-format
P: kalign: no-upstream-changelog
I: Lintian run was successful.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* html2text*
intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpcre3* libpipeline1*
libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-core-dummy*
sbuild-build-depends-kalign-dummy*
0 upgraded, 0 newly installed, 19 to remove and 0 not upgraded.
After this operation, 27.0 MB disk space will be freed.
(Reading database ... 12132 files and directories currently installed.)
Removing sbuild-build-depends-kalign-dummy ...
Removing debhelper ...
Removing man-db ...
Purging configuration files for man-db ...
Removing bsdmainutils ...
Purging configuration files for bsdmainutils ...
Removing file ...
Removing po-debconf ...
Removing intltool-debian ...
Removing gettext ...
Removing gettext-base ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
Purging configuration files for html2text ...
Removing libcroco3 ...
Purging configuration files for libcroco3 ...
Removing libglib2.0-0 ...
Purging configuration files for libglib2.0-0 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libpcre3 ...
Purging configuration files for libpcre3 ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
Removing sbuild-build-depends-core-dummy ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
Build-Space: 1972
Build-Time: 16
Distribution: unstable
Install-Time: 8
Job: kalign_2.03+20110620-1.dsc
Lintian: pass
Package: kalign
Package-Time: 30
Source-Version: 1:2.03+20110620-1
Space: 1972
Status: successful
Version: 1:2.03+20110620-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20110625-1726
Build needed 00:00:30, 1972k disc space
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