[Debian-med-packaging] r-cran-qvalue_1.26.0-1_amd64.changes ACCEPTED into unstable
Charles Plessy
plessy at debian.org
Wed Jun 29 04:48:57 UTC 2011
Le Wed, Jun 29, 2011 at 04:47:31AM +0000, Debian FTP Masters a écrit :
>
>
>
> Accepted:
> r-cran-qvalue_1.26.0-1.debian.tar.gz
> to main/r/r-cran-qvalue/r-cran-qvalue_1.26.0-1.debian.tar.gz
> r-cran-qvalue_1.26.0-1.dsc
> to main/r/r-cran-qvalue/r-cran-qvalue_1.26.0-1.dsc
> r-cran-qvalue_1.26.0-1_all.deb
> to main/r/r-cran-qvalue/r-cran-qvalue_1.26.0-1_all.deb
> r-cran-qvalue_1.26.0.orig.tar.gz
> to main/r/r-cran-qvalue/r-cran-qvalue_1.26.0.orig.tar.gz
Build logs (featuring Lintian report) attached.
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sbuild (Debian sbuild) 0.62.4 (25 Jun 2011) on anx191
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? r-cran-qvalue 1.26.0-1 (amd64) 29 Jun 2011 13:25 ?
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Package: r-cran-qvalue
Version: 1.26.0-1
Source Version: 1.26.0-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/r-cran-qvalue-WY8unG/r-cran-qvalue-1.26.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-cran-qvalue-WY8unG' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-604236a8-c88f-481e-8716-1eb7e47e5efd' with '«CHROOT»'
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? Update chroot ?
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Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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r-cran-qvalue_1.26.0-1.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-T3gEdm/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
sbuild-build-depends-core-dummy is already the newest version.
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev
dpkg-deb: building package `sbuild-build-depends-r-cran-qvalue-dummy' in `/«BUILDDIR»/resolver-xn0Zjc/apt_archive/sbuild-build-depends-r-cran-qvalue-dummy.deb'.
OK
Reading package lists...
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? Install r-cran-qvalue build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libxerces2-java libwrap0 libavalon-framework-java
libatk1.0-data libxalan2-java libdbus-1-3 libcap2 java-common libnspr4-0d
java-wrappers default-jre-headless libgnutls26 libcommons-logging-java
libtasn1-3 openjdk-6-jre-lib libcommons-math-java openjdk-6-jre-headless
libavahi-common-data libsam-java libgdk-pixbuf2.0-0 ant
libaccess-bridge-java-jni default-jdk libcups2 default-jre libxinerama1
libkrb5support0 libgif4 libcommons-net-java libbsf-java
libxml-commons-external-java tzdata-java libgcrypt11 libkeyutils1 libasound2
libflac8 libconcurrent-java libvorbisenc2 libjama-java libasyncns0
libjasper1 libswing-layout-java libxtst6 libavahi-client3
ca-certificates-java openssl libhamcrest-java libpulse0 libxdamage1
libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk libbatik-java libxcursor1
libjlibeps-java openjdk-6-jre libavahi-common3 liblog4j1.2-java
libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
libsqlite3-0 libgtk2.0-0 libssl1.0.0 libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
cdbs dpatch gfortran gfortran-4.6 libblas-dev libblas3gf libbz2-dev
libgfortran3 libjpeg62-dev liblapack-dev liblapack3gf libncurses5-dev
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpng12-dev
libreadline-dev libreadline6-dev libxss1 libxt6 r-base-core r-base-dev
tcl8.5 tk8.5 xdg-utils zip zlib1g-dev
Suggested packages:
devscripts curl gfortran-multilib gfortran-doc gfortran-4.6-multilib
gfortran-4.6-doc libgfortran3-dbg ncurses-doc ess r-doc-info r-doc-pdf
r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils r-recommended r-doc-html xterm x-terminal-emulator
libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs dpatch gfortran gfortran-4.6 libblas-dev libblas3gf libbz2-dev
libgfortran3 libjpeg62-dev liblapack-dev liblapack3gf libncurses5-dev
libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpng12-dev
libreadline-dev libreadline6-dev libxss1 libxt6 r-base-core r-base-dev
sbuild-build-depends-r-cran-qvalue-dummy tcl8.5 tk8.5 xdg-utils zip
zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/36.5 MB of archives.
After this operation, 87.3 MB of additional disk space will be used.
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Processing triggers for man-db ...
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Setting up dpatch (2.0.31) ...
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Setting up gfortran (4:4.6.0-6) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
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update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
Setting up libjpeg62-dev (6b1-1) ...
Setting up liblapack3gf (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
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Setting up zip (3.0-4) ...
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Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
Setting up r-base-core (2.13.0-4) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-4) ...
Setting up sbuild-build-depends-r-cran-qvalue-dummy (0.invalid.0) ...
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? Build environment ?
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Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-1 gcc-4.6_4.6.1-1 libc6-dev_2.13-7 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 linux-libc-dev_2.6.39-2
Package versions: ant_1.8.2-2 apt_0.8.15 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-2 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110421 ca-certificates-java_20110531 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.6_4.6.1-1 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.0 debian-archive-keyring_2010.08.28 debianutils_4.0.2 default-jdk_1:1.6-40 default-jre_1:1.6-40 default-jre-headless_1:1.6-40 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4stable1 e2fsprogs_1.41.12-4stable1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.6_4.6.1-1 gcc_4:4.6.0-6 gcc-4.6_4.6.1-1 gcc-4.6-base_4.6.1-1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 java-common_0.40 java-wrappers_0.1.22 junit4_4.8.2-2 libaccess-bridge-java_1.26.2-5 libaccess-bridge-java-jni_1.26.2-5 libacl1_2.2.51-1 libasound2_1.0.23-4 libasyncns0_0.8-2 libatk1.0-0_2.0.1-1 libatk1.0-data_2.0.1-1 libattr1_1:2.4.46-1 libavahi-client3_0.6.30-3 libavahi-common-data_0.6.30-3 libavahi-common3_0.6.30-3 libavalon-framework-java_4.2.0-7 libbatik-java_1.7-7 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-2 libbsf-java_1:2.4.0-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-7 libc-dev-bin_2.13-7 libc6_2.13-7 libc6-dev_2.13-7 libcairo2_1.10.2-6 libcap2_1:2.21-1 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4stable1 libcommons-io-java_1.4-3 libcommons-logging-java_1.1.1-8 libcommons-math-java_2.2-1 libcommons-net-java_1.4.1-2 libconcurrent-java_1.3.4-4 libcroco3_0.6.2-1 libcups2_1.4.6-11 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdbus-1-3_1.4.12-2 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-3 libexpat1_2.0.1-7 libflac8_1.2.1-3 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-1 libgcrypt11_1.4.6-7 libgdbm3_1.8.3-9 libgdk-pixbuf2.0-0_2.23.3-3.1 libgfortran3_4.6.1-1 libgif4_4.1.6-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-2 libgomp1_4.6.1-1 libgpg-error0_1.10-0.3 libgssapi-krb5-2_1.9.1+dfsg-1+b1 libgtk2.0-0_2.24.4-3 libgtk2.0-common_2.24.4-3 libhamcrest-java_1.1-8 libice6_2:1.0.7-2 libjama-java_1.0.2-3 libjargs-java_1.0.0-3 libjasper1_1.900.1-7+b1 libjaxp1.3-java_1.3.05-1 libjlibeps-java_0.1+2-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libk5crypto3_1.9.1+dfsg-1+b1 libkeyutils1_1.4-5 libkrb5-3_1.9.1+dfsg-1+b1 libkrb5support0_1.9.1+dfsg-1+b1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblcms1_1.18.dfsg-1.2+b4 liblocale-gettext-perl_1.05-6+b1 liblog4j1.2-java_1.2.15-11 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-2 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncurses5-dev_5.9-1 libnspr4-0d_4.8.8-2 libnss3-1d_3.12.10-1 libogg0_1.2.2~dfsg-1 liboro-java_2.0.8a-7 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpulse0_0.9.21-4 libpwl5_0.11.2-3 libquadmath0_4.6.1-1 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsam-java_1.46-1 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libsndfile1_1.0.24-1 libsqlite3-0_3.7.7-2 libss2_1.41.12-4stable1 libssl1.0.0_1.0.0d-3 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 libswing-layout-java_1.0.4-1 libswitch-perl_2.16-1 libtasn1-3_2.9-4 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.19.1-2 libvorbis0a_1.3.2-1 libvorbisenc2_1.3.2-1 libwrap0_7.6.q-21 libx11-6_2:1.4.3-2 libx11-data_2:1.4.3-2 libxalan2-java_2.7.1-5 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.11-3 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.0-3 libxerces2-java_2.9.1-4.1 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft2_2.2.0-3 libxi6_2:1.4.3-3 libxinerama1_2:1.1.1-3 libxml-commons-external-java_1.3.05-2 libxml2_2.7.8.dfsg-3 libxrandr2_2:1.3.1-2 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 libxtst6_2:1.2.0-1 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.19.1-2 multiarch-support_2.13-7 ncurses-base_5.9-1 ncurses-bin_5.9-1 openjdk-6-jdk_6b18-1.8.7-5 openjdk-6-jre_6b18-1.8.7-5 openjdk-6-jre-headless_6b18-1.8.7-5 openjdk-6-jre-lib_6b18-1.8.7-5 openssl_1.0.0d-3 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-4 r-base-dev_2.13.0-4 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-qvalue-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 shared-mime-info_0.90-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-2 tzdata-java_2011h-2 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.19.1-2 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
????????????????????????????????????????????????????????????????????????????????
? Build ?
????????????????????????????????????????????????????????????????????????????????
Unpack source
?????????????
dpkg-source: warning: extracting unsigned source package (r-cran-qvalue_1.26.0-1.dsc)
dpkg-source: info: extracting r-cran-qvalue in r-cran-qvalue-1.26.0
dpkg-source: info: unpacking r-cran-qvalue_1.26.0.orig.tar.gz
dpkg-source: info: unpacking r-cran-qvalue_1.26.0-1.debian.tar.gz
Check disc space
????????????????
Sufficient free space for build
User Environment
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HOME=/sbuild-nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
SCHROOT_SESSION_ID=sid-amd64-sbuild-604236a8-c88f-481e-8716-1eb7e47e5efd
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
USER=charles
USERNAME=charles
dpkg-buildpackage
?????????????????
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-cran-qvalue
dpkg-buildpackage: source version 1.26.0-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-cran-qvalue-1.26.0
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "reverse-patches" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
find . -name "*.pdf" -o -name "*.tex" -o -name "*-eps" -o -name "*.log" -o -name "*.ps" -o -name "*.txt" | xargs -r chmod -x
dpkg-source -b r-cran-qvalue-1.26.0
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building r-cran-qvalue using existing ./r-cran-qvalue_1.26.0.orig.tar.gz
dpkg-source: info: building r-cran-qvalue in r-cran-qvalue_1.26.0-1.debian.tar.gz
dpkg-source: info: building r-cran-qvalue in r-cran-qvalue_1.26.0-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `update-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-qvalue/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-qvalue/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'qvalue' ...
** R
** data
** inst
** preparing package for lazy loading
Loading Tcl/Tk interface ... Warning in fun(...) : no DISPLAY variable so Tk is not available
done
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Warning message:
In fun(...) : no DISPLAY variable so Tk is not available
* DONE (qvalue)
rm -vf /«PKGBUILDDIR»/debian/r-cran-qvalue/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-cran-qvalue/usr/lib/R/site-library/qvalue/COPYING \
/«PKGBUILDDIR»/debian/r-cran-qvalue/usr/lib/R/site-library/qvalue/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-cran-qvalue/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-cran-qvalue/usr/share/lintian/overrides/r-cran-qvalue; \
fi
Adding cdbs dependencies to debian/r-cran-qvalue.substvars
dh_installdirs -pr-cran-qvalue
echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-cran-qvalue.substvars
chmod 644 debian/r-cran-qvalue/usr/lib/R/site-library/qvalue/doc/*
dh_installdocs -pr-cran-qvalue
dh_installexamples -pr-cran-qvalue
dh_installman -pr-cran-qvalue
dh_installinfo -pr-cran-qvalue
dh_installmenu -pr-cran-qvalue
dh_installcron -pr-cran-qvalue
dh_installinit -pr-cran-qvalue
dh_installdebconf -pr-cran-qvalue
dh_installemacsen -pr-cran-qvalue
dh_installcatalogs -pr-cran-qvalue
dh_installpam -pr-cran-qvalue
dh_installlogrotate -pr-cran-qvalue
dh_installlogcheck -pr-cran-qvalue
dh_installchangelogs -pr-cran-qvalue
dh_installudev -pr-cran-qvalue
dh_lintian -pr-cran-qvalue
dh_bugfiles -pr-cran-qvalue
dh_install -pr-cran-qvalue
dh_link -pr-cran-qvalue
dh_installmime -pr-cran-qvalue
dh_installgsettings -pr-cran-qvalue
dh_strip -pr-cran-qvalue
dh_compress -pr-cran-qvalue
dh_fixperms -pr-cran-qvalue
dh_makeshlibs -pr-cran-qvalue
dh_installdeb -pr-cran-qvalue
dh_perl -pr-cran-qvalue
dh_shlibdeps -pr-cran-qvalue
dh_gencontrol -pr-cran-qvalue
dh_md5sums -pr-cran-qvalue
dh_builddeb -pr-cran-qvalue
dpkg-deb: building package `r-cran-qvalue' in `../r-cran-qvalue_1.26.0-1_all.deb'.
dpkg-genchanges >../r-cran-qvalue_1.26.0-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build r-cran-qvalue-1.26.0
dpkg-buildpackage: full upload (original source is included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110629-1326
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
r-cran-qvalue_1.26.0-1_amd64.changes:
?????????????????????????????????????
Format: 1.8
Date: Wed, 29 Jun 2011 13:14:28 +0900
Source: r-cran-qvalue
Binary: r-cran-qvalue
Architecture: source all
Version: 1.26.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-cran-qvalue - GNU R package for Q-value estimation for FDR control
Changes:
r-cran-qvalue (1.26.0-1) unstable; urgency=low
.
* New upstream version.
* debian/control:
- Allow uploade by Debian Maintainers.
- Use Debhelper 8 (debian/compat).
- Incremented Standards-Version to reflect conformance with Policy 3.9.2.
(no changes needed)
- Corrected VCS URLs.
* debian/copyright converted to machine-readable DEP 5 format.
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Files:
8c911fdb672a04ea1592ac81a1d87e9d 1199 gnu-r optional r-cran-qvalue_1.26.0-1.dsc
ea4be17448dfc18fb3612a7f151126ef 553066 gnu-r optional r-cran-qvalue_1.26.0.orig.tar.gz
805e012a951d86453ece36d7f66d8843 3491 gnu-r optional r-cran-qvalue_1.26.0-1.debian.tar.gz
79b700d6eca2c289efdf6fc9c7ea604e 584794 gnu-r optional r-cran-qvalue_1.26.0-1_all.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
r-cran-qvalue_1.26.0-1_all.deb
??????????????????????????????
new debian package, version 2.0.
size 584794 bytes: control archive= 2020 bytes.
971 bytes, 19 lines control
3403 bytes, 43 lines md5sums
Package: r-cran-qvalue
Version: 1.26.0-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 964
Depends: r-base-core (>= 2.13.0~)
Section: gnu-r
Priority: optional
Homepage: http://cran.r-project.org/web/packages/qvalue
Description: GNU R package for Q-value estimation for FDR control
This package takes a list of p-values resulting from the simultaneous
testing of many hypotheses and estimates their q-values. The
q-value of a test measures the proportion of false positives incurred
(called the false discovery rate) when that particular test is called
significant. Various plots are automatically generated, allowing one
to make sensible significance cut-offs. Several mathematical results
have recently been shown on the conservative accuracy of the estimated
q-values from this software. The software can be applied to problems
in genomics, brain imaging, astrophysics, and data mining.
drwxr-xr-x root/root 0 2011-06-29 13:26 ./
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/R/
-rw-r--r-- root/root 384 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/R/qvalue
-rw-r--r-- root/root 8539 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/R/qvalue.rdb
-rw-r--r-- root/root 312 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/R/qvalue.rdx
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/help/
-rw-r--r-- root/root 142 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/help/AnIndex
-rw-r--r-- root/root 15940 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/help/qvalue.rdb
-rw-r--r-- root/root 126 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/help/aliases.rds
-rw-r--r-- root/root 277 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/help/qvalue.rdx
-rw-r--r-- root/root 144 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/help/paths.rds
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/data/
-rw-r--r-- root/root 23438 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/data/hedenfalk.RData
-rw-r--r-- root/root 544 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/NAMESPACE
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/html/
-rw-r--r-- root/root 1958 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/html/00Index.html
-rw-r--r-- root/root 1179 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/html/R.css
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/
-rw-r--r-- root/root 467 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/Rd.rds
-rw-r--r-- root/root 498 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/hsearch.rds
-rw-r--r-- root/root 483 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/nsInfo.rds
-rw-r--r-- root/root 118 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/data.rds
-rw-r--r-- root/root 176 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/links.rds
-rw-r--r-- root/root 222 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/vignette.rds
-rw-r--r-- root/root 1024 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/Meta/package.rds
-rw-r--r-- root/root 1269 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/DESCRIPTION
-rw-r--r-- root/root 470 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/INDEX
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/
-rw-r--r-- root/root 21964 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qPlots.eps
-rw-r--r-- root/root 64204 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/my-qvalue-results.txt
-rw-r--r-- root/root 1202 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue.R
-rw-r--r-- root/root 3335 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/pHist.pdf
-rw-r--r-- root/root 404 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/index.html
-rw-r--r-- root/root 2126 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue.bib
-rw-r--r-- root/root 3809 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue-002.eps
-rw-r--r-- root/root 33332 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue-006.pdf
-rw-r--r-- root/root 200605 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue.pdf
-rw-r--r-- root/root 18395 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue-006.eps
-rw-r--r-- root/root 6182 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/pHist.eps
-rw-r--r-- root/root 320960 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/manual.pdf
-rw-r--r-- root/root 13144 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue-004.pdf
-rw-r--r-- root/root 6082 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue.Rnw
-rw-r--r-- root/root 23481 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qPlots.pdf
-rw-r--r-- root/root 4060 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue-004.eps
-rw-r--r-- root/root 12810 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qvalue-002.pdf
-rw-r--r-- root/root 3646 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qHist.pdf
-rw-r--r-- root/root 6447 2011-06-29 13:26 ./usr/lib/R/site-library/qvalue/doc/qHist.eps
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/share/
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-06-29 13:26 ./usr/share/doc/r-cran-qvalue/
-rw-r--r-- root/root 1063 2011-06-29 13:03 ./usr/share/doc/r-cran-qvalue/copyright
-rw-r--r-- root/root 1141 2011-06-29 13:14 ./usr/share/doc/r-cran-qvalue/changelog.Debian.gz
-rw-r--r-- root/root 356 2010-11-22 22:08 ./usr/share/doc/r-cran-qvalue/README.Debian
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? Post Build ?
????????????????????????????????????????????????????????????????????????????????
lintian
???????
W: r-cran-qvalue source: unused-build-dependency-on-cdbs
P: r-cran-qvalue: no-upstream-changelog
I: Lintian run was successful.
????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libxerces2-java libwrap0 libavalon-framework-java
libatk1.0-data libxalan2-java libdbus-1-3 libcap2 java-common libnspr4-0d
java-wrappers default-jre-headless libgnutls26 libcommons-logging-java
libtasn1-3 openjdk-6-jre-lib libcommons-math-java openjdk-6-jre-headless
libavahi-common-data libsam-java libgdk-pixbuf2.0-0 ant
libaccess-bridge-java-jni default-jdk libcups2 default-jre libxinerama1
libkrb5support0 libgif4 libcommons-net-java libbsf-java
libxml-commons-external-java tzdata-java libgcrypt11 libkeyutils1 libasound2
libflac8 libconcurrent-java libvorbisenc2 libjama-java libasyncns0
libjasper1 libswing-layout-java libxtst6 libavahi-client3
ca-certificates-java openssl libhamcrest-java libpulse0 libxdamage1
libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk libbatik-java libxcursor1
libjlibeps-java openjdk-6-jre libavahi-common3 liblog4j1.2-java
libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
libsqlite3-0 libgtk2.0-0 libssl1.0.0 libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
cdbs* dpatch* gfortran* gfortran-4.6* libblas-dev* libblas3gf* libbz2-dev*
libgfortran3* libjpeg62-dev* liblapack-dev* liblapack3gf* libncurses5-dev*
libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpng12-dev*
libreadline-dev* libreadline6-dev* libxss1* libxt6* r-base-core* r-base-dev*
sbuild-build-depends-r-cran-qvalue-dummy* tcl8.5* tk8.5* xdg-utils* zip*
zlib1g-dev*
0 upgraded, 0 newly installed, 29 to remove and 0 not upgraded.
After this operation, 87.3 MB disk space will be freed.
(Reading database ... 18418 files and directories currently installed.)
Removing sbuild-build-depends-r-cran-qvalue-dummy ...
Removing r-base-dev ...
Removing cdbs ...
Removing dpatch ...
Purging configuration files for dpatch ...
Removing gfortran ...
Removing gfortran-4.6 ...
Removing liblapack-dev ...
Removing libblas-dev ...
Removing r-base-core ...
Purging configuration files for r-base-core ...
Removing liblapack3gf ...
Purging configuration files for liblapack3gf ...
Removing libblas3gf ...
Purging configuration files for libblas3gf ...
Removing libbz2-dev ...
Removing libgfortran3 ...
Purging configuration files for libgfortran3 ...
Removing libjpeg62-dev ...
Removing libreadline-dev ...
Removing libreadline6-dev ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
Purging configuration files for libpaper1 ...
Removing libpcre3-dev ...
Removing libpcrecpp0 ...
Purging configuration files for libpcrecpp0 ...
Removing libpng12-dev ...
Removing tk8.5 ...
Purging configuration files for tk8.5 ...
Removing libxss1 ...
Purging configuration files for libxss1 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
Processing triggers for man-db ...
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? Summary ?
????????????????????????????????????????????????????????????????????????????????
Architecture: amd64
Build-Space: 3036
Build-Time: 6
Distribution: unstable
Install-Time: 35
Job: r-cran-qvalue_1.26.0-1.dsc
Lintian: pass
Package: r-cran-qvalue
Package-Time: 43
Source-Version: 1.26.0-1
Space: 3036
Status: successful
Version: 1.26.0-1
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Finished at 20110629-1326
Build needed 00:00:43, 3036k disc space
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