[Debian-med-packaging] r-cran-genetics_1.3.6-2_amd64.changes ACCEPTED into unstable
Charles Plessy
plessy at debian.org
Wed Jun 29 22:30:03 UTC 2011
Le Wed, Jun 29, 2011 at 02:47:28PM +0000, Debian FTP Masters a écrit :
>
> Accepted:
> r-cran-genetics_1.3.6-2.debian.tar.gz
> to main/r/r-cran-genetics/r-cran-genetics_1.3.6-2.debian.tar.gz
> r-cran-genetics_1.3.6-2.dsc
> to main/r/r-cran-genetics/r-cran-genetics_1.3.6-2.dsc
> r-cran-genetics_1.3.6-2_all.deb
> to main/r/r-cran-genetics/r-cran-genetics_1.3.6-2_all.deb
Build logs attached.
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sbuild (Debian sbuild) 0.62.4 (25 Jun 2011) on aqwa.igloo
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? r-cran-genetics 1.3.6-2 (amd64) 29 juin 2011 23:28 ?
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Package: r-cran-genetics
Version: 1.3.6-2
Source Version: 1.3.6-2
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/r-cran-genetics-ONFhTF/r-cran-genetics-1.3.6' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-cran-genetics-ONFhTF' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-6af6489a-f93d-4aaf-83e4-32dc6fdbaac4' with '«CHROOT»'
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? Update chroot ?
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Hit ftp://ftp.jaist.ac.jp sid InRelease
Hit ftp://ftp.jaist.ac.jp sid/main Sources/DiffIndex
Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
Hit ftp://ftp.jaist.ac.jp sid/main TranslationIndex
Hit ftp://ftp.jaist.ac.jp sid/main Translation-fr
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0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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r-cran-genetics_1.3.6-2.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-AueHN3/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
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sbuild-build-depends-core-dummy
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev, r-cran-combinat, r-cran-mvtnorm, r-cran-gdata, r-cran-gtools, r-cran-mass
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev, r-cran-combinat, r-cran-mvtnorm, r-cran-gdata, r-cran-gtools, r-cran-mass
dpkg-deb: building package `sbuild-build-depends-r-cran-genetics-dummy' in `/«BUILDDIR»/resolver-tDBSdr/apt_archive/sbuild-build-depends-r-cran-genetics-dummy.deb'.
OK
Reading package lists...
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? Install r-cran-genetics build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
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The following extra packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev r-cran-combinat r-cran-gdata r-cran-gtools
r-cran-mass r-cran-mvtnorm tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev r-cran-combinat r-cran-gdata r-cran-gtools
r-cran-mass r-cran-mvtnorm sbuild-build-depends-r-cran-genetics-dummy tcl8.5
tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded.
Need to get 26.2 MB/55.2 MB of archives.
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Get:12 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main r-cran-combinat all 0.0-8-1 [30.7 kB]
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Get:15 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main r-cran-mvtnorm amd64 0.9-9991-1 [363 kB]
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Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-3) ...
Setting up html2text (1.3.2a-15) ...
Setting up libglib2.0-0 (2.28.6-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.9.0) ...
Setting up cdbs (0.4.94) ...
Setting up dpatch (2.0.31) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up gfortran-4.6 (4.6.1-1) ...
Setting up gfortran (4:4.6.0-6) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
Setting up libpixman-1-0 (0.21.8-1) ...
Setting up libpng12-0 (1.2.44-2) ...
Setting up libcairo2 (1.10.2-6) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libjpeg62-dev (6b1-1) ...
Setting up liblapack3gf (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
Setting up libpango1.0-0 (1.28.4-1) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcrecpp0 (8.12-3) ...
Setting up libpcre3-dev (8.12-3) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.44-2) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
Setting up libtiff4 (3.9.5-1) ...
Setting up libxss1 (1:1.2.1-1) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-4) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
Setting up r-base-core (2.13.0-4) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0-4) ...
Setting up r-cran-combinat (0.0-8-1) ...
Setting up r-cran-gtools (2.6.2-1) ...
Setting up r-cran-gdata (2.8.2-1) ...
Setting up r-cran-mass (7.3-13-1) ...
Setting up r-cran-mvtnorm (0.9-9991-1) ...
Setting up sbuild-build-depends-r-cran-genetics-dummy (0.invalid.0) ...
????????????????????????????????????????????????????????????????????????????????
? Build environment ?
????????????????????????????????????????????????????????????????????????????????
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-1 gcc-4.6_4.6.1-1 libc6-dev_2.13-7 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 linux-libc-dev_2.6.39-2
Package versions: apt_0.8.15 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-2 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.6_4.6.1-1 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.0 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4stable1 e2fsprogs_1.41.12-4stable1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.6_4.6.1-1 gcc_4:4.6.0-6 gcc-4.6_4.6.1-1 gcc-4.6-base_4.6.1-1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-1 libattr1_1:2.4.46-1 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-2 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-7 libc-dev-bin_2.13-7 libc6_2.13-7 libc6-dev_2.13-7 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4stable1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-1 libgdbm3_1.8.3-9 libgfortran3_4.6.1-1 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-1 libice6_2:1.0.7-2 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-2 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.1-1 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.41.12-4stable1 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.19.1-2 libx11-6_2:1.4.3-2 libx11-data_2:1.4.3-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-3 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.19.1-2 multiarch-support_2.13-7 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-4 r-base-dev_2.13.0-4 r-cran-combinat_0.0-8-1 r-cran-gdata_2.8.2-1 r-cran-gtools_2.6.2-1 r-cran-mass_7.3-13-1 r-cran-mvtnorm_0.9-9991-1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-genetics-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-2 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.19.1-2 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
????????????????????????????????????????????????????????????????????????????????
? Build ?
????????????????????????????????????????????????????????????????????????????????
Unpack source
?????????????
dpkg-source: warning: extracting unsigned source package (r-cran-genetics_1.3.6-2.dsc)
dpkg-source: info: extracting r-cran-genetics in r-cran-genetics-1.3.6
dpkg-source: info: unpacking r-cran-genetics_1.3.6.orig.tar.gz
dpkg-source: info: unpacking r-cran-genetics_1.3.6-2.debian.tar.gz
Check disc space
????????????????
Sufficient free space for build
User Environment
????????????????
HOME=/sbuild-nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
SCHROOT_SESSION_ID=sid-amd64-sbuild-6af6489a-f93d-4aaf-83e4-32dc6fdbaac4
SCHROOT_UID=1000
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
USER=charles
USERNAME=charles
dpkg-buildpackage
?????????????????
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-cran-genetics
dpkg-buildpackage: source version 1.3.6-2
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-cran-genetics-1.3.6
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "reverse-patches" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
dpkg-source -b r-cran-genetics-1.3.6
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building r-cran-genetics using existing ./r-cran-genetics_1.3.6.orig.tar.gz
dpkg-source: info: building r-cran-genetics in r-cran-genetics_1.3.6-2.debian.tar.gz
dpkg-source: info: building r-cran-genetics in r-cran-genetics_1.3.6-2.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `update-config'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-genetics/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-genetics/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'genetics' ...
** R
** data
** inst
** preparing package for lazy loading
Attaching package: 'combinat'
The following object(s) are masked from 'package:utils':
combn
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following object(s) are masked from 'package:stats':
nobs
The following object(s) are masked from 'package:utils':
object.size
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
NOTE: THIS PACKAGE IS NOW OBSOLETE.
The R-Genetics project has developed an set of enhanced genetics
packages to replace 'genetics'. Please visit the project homepage
at http://rgenetics.org for informtion.
* DONE (genetics)
rm -vf /«PKGBUILDDIR»/debian/r-cran-genetics/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-cran-genetics/usr/lib/R/site-library/genetics/COPYING \
/«PKGBUILDDIR»/debian/r-cran-genetics/usr/lib/R/site-library/genetics/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-cran-genetics/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-cran-genetics/usr/share/lintian/overrides/r-cran-genetics; \
fi
Adding cdbs dependencies to debian/r-cran-genetics.substvars
dh_installdirs -pr-cran-genetics
echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-cran-genetics.substvars
chmod 644 debian/r-cran-genetics/usr/lib/R/site-library/genetics/doc/*.pdf
dh_installdocs -pr-cran-genetics ./NEWS ./TODO
dh_installexamples -pr-cran-genetics
dh_installman -pr-cran-genetics
dh_installinfo -pr-cran-genetics
dh_installmenu -pr-cran-genetics
dh_installcron -pr-cran-genetics
dh_installinit -pr-cran-genetics
dh_installdebconf -pr-cran-genetics
dh_installemacsen -pr-cran-genetics
dh_installcatalogs -pr-cran-genetics
dh_installpam -pr-cran-genetics
dh_installlogrotate -pr-cran-genetics
dh_installlogcheck -pr-cran-genetics
dh_installchangelogs -pr-cran-genetics ./ChangeLog
dh_installudev -pr-cran-genetics
dh_lintian -pr-cran-genetics
dh_bugfiles -pr-cran-genetics
dh_install -pr-cran-genetics
dh_link -pr-cran-genetics
dh_installmime -pr-cran-genetics
dh_installgsettings -pr-cran-genetics
dh_strip -pr-cran-genetics
dh_compress -pr-cran-genetics
dh_fixperms -pr-cran-genetics
dh_makeshlibs -pr-cran-genetics
dh_installdeb -pr-cran-genetics
dh_perl -pr-cran-genetics
dh_shlibdeps -pr-cran-genetics
dh_gencontrol -pr-cran-genetics
dh_md5sums -pr-cran-genetics
dh_builddeb -pr-cran-genetics
dpkg-deb: building package `r-cran-genetics' in `../r-cran-genetics_1.3.6-2_all.deb'.
dpkg-genchanges >../r-cran-genetics_1.3.6-2_amd64.changes
dpkg-genchanges: not including original source code in upload
dpkg-source --after-build r-cran-genetics-1.3.6
dpkg-buildpackage: binary and diff upload (original source NOT included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110629-2330
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
r-cran-genetics_1.3.6-2_amd64.changes:
??????????????????????????????????????
Format: 1.8
Date: Wed, 29 Jun 2011 23:25:13 +0900
Source: r-cran-genetics
Binary: r-cran-genetics
Architecture: source all
Version: 1.3.6-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-cran-genetics - GNU R package for population genetics
Changes:
r-cran-genetics (1.3.6-2) unstable; urgency=low
.
* debian/control:
- (Build-)Depend on r-cran-mass, which provides r-cran-vr (LP: #755951).
- Corrected VCS URLs.
- Using Debhelper 8 (debian/compat)
- Incremented Standards-Version to reflect conformance with Policy 3.9.2
(no changes needed).
* Formatted debian/copyright to machine-readable DEP-5 format.
* Install tests in ?/usr/share/doc/r-cran-genetics/tests? (debian/docs),
document them (debian/README.test), and remove wrong comment that no tests
are available (debian/README.Debian).
Checksums-Sha1:
26e87c0c57e55cd3de72b06e2cf8f5992ba10508 1289 r-cran-genetics_1.3.6-2.dsc
983ecd8f79a48d74de0b1bda43d7e1ab42beb132 3545 r-cran-genetics_1.3.6-2.debian.tar.gz
70b8b6c1b499ab8e370e82f232ba6e85d356ae5c 278816 r-cran-genetics_1.3.6-2_all.deb
Checksums-Sha256:
d0d3cfc5c0d05e41587cf7c42a9b645a29dfddcab093112524407739e0f4b8bb 1289 r-cran-genetics_1.3.6-2.dsc
3419e5da93fc8f75d8dd1ca5ab64cd0d25394e25562511ae3fad8dda9b5c0b36 3545 r-cran-genetics_1.3.6-2.debian.tar.gz
be21d644f794baa1c9df7867372ef6c7fa55df5695d540284bc32143cb4d09a0 278816 r-cran-genetics_1.3.6-2_all.deb
Files:
cf7364dbd62198d29f2f447f113abbd3 1289 gnu-r optional r-cran-genetics_1.3.6-2.dsc
319e4102eb4646b51f07eb927b158409 3545 gnu-r optional r-cran-genetics_1.3.6-2.debian.tar.gz
b3a7999c9065fd8e2047c6eff48efbb8 278816 gnu-r optional r-cran-genetics_1.3.6-2_all.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
r-cran-genetics_1.3.6-2_all.deb
???????????????????????????????
new debian package, version 2.0.
size 278816 bytes: control archive= 1976 bytes.
1127 bytes, 24 lines control
3064 bytes, 38 lines md5sums
Package: r-cran-genetics
Version: 1.3.6-2
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 512
Depends: r-base-core (>= 2.13.0~), r-recommended, r-cran-gtools, r-cran-gdata, r-cran-combinat, r-cran-mvtnorm, r-cran-mass
Section: gnu-r
Priority: optional
Homepage: http://cran.r-project.org/web/packages/genetics
Description: GNU R package for population genetics
Classes and methods for handling genetic data. Includes
The package provides a library for the statistics environment R that
contains classes to represent genotypes and haplotypes at single markers up
to multiple markers on multiple chromosomes. Function include
allele frequencies, flagging homo/heterozygotes, flagging carriers
of certain alleles, estimating and testing for Hardy-Weinberg
disequilibrium, estimating and testing for linkage disequilibrium,
and more.
.
NOTE: THIS PACKAGE IS NOW OBSOLETE.
.
The R-Genetics project has developed an set of enhanced genetics
packages to replace 'genetics'. Please visit the project homepage
at http://rgenetics.org for information.
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? Summary ?
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Architecture: amd64
Build-Space: 1480
Build-Time: 11
Distribution: unstable
Install-Time: 48
Job: r-cran-genetics_1.3.6-2.dsc
Lintian: pass
Package: r-cran-genetics
Package-Time: 63
Source-Version: 1.3.6-2
Space: 1480
Status: successful
Version: 1.3.6-2
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Finished at 20110629-2330
Build needed 00:01:03, 1480k disc space
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