[Debian-med-packaging] Build logs for embassy-domainatrix_0.1.0+20100721-3_amd64.changes
Charles Plessy
plessy at debian.org
Thu May 12 03:55:51 UTC 2011
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
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? embassy-domainatrix 0.1.0+20100721-3 (amd64) 11 mai 2011 15:29 ?
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Package: embassy-domainatrix
Version: 0.1.0+20100721-3
Source Version: 0.1.0+20100721-3
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/embassy-domainatrix-MERrFY' with '?BUILDDIR?'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-1891ea4f-4c83-42c4-884d-4dbe013f97c2' with '?CHROOT?'
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? Update chroot ?
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Hit http://ftp.riken.jp sid InRelease
Hit http://ftp.riken.jp sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.riken.jp sid/main TranslationIndex
Ign http://ftp.riken.jp sid/main amd64 2011-05-11-0214.34.pdiff
Hit http://ftp.riken.jp sid/main amd64
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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embassy-domainatrix_0.1.0+20100721-3.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/?BUILDDIR?/resolver-8DKGWz/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously deselected package sbuild-build-depends-core-dummy.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 7), emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~), libx11-dev, libgd2-xpm-dev, libmysqlclient-dev, libpq-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 7), emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~), libx11-dev, libgd2-xpm-dev, libmysqlclient-dev, libpq-dev
dpkg-deb: building package `sbuild-build-depends-embassy-domainatrix-dummy' in `/?BUILDDIR?/resolver-FW85r8/apt_archive/sbuild-build-depends-embassy-domainatrix-dummy.deb'.
OK
Reading package lists...
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? Install embassy-domainatrix build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs comerr-dev debhelper emboss-lib file fontconfig-config
gettext gettext-base groff-base html2text intltool-debian krb5-multidev
libcroco3 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev
libfreetype6 libfreetype6-dev libgcrypt11 libgd2-xpm libgd2-xpm-dev
libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libgssrpc4
libhpdf-2.1.0 libjpeg62 libjpeg62-dev libk5crypto3 libkadm5clnt-mit8
libkadm5srv-mit8 libkdb5-5 libkeyutils1 libkrb5-3 libkrb5-dev
libkrb5support0 libldap-2.4-2 libmagic1 libmysqlclient-dev libmysqlclient16
libpcre3 libpipeline1 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5
libpthread-stubs0 libpthread-stubs0-dev libsasl2-2 libssl-dev libssl1.0.0
libtasn1-3 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 man-db
mysql-common pkg-config po-debconf ttf-dejavu-core ucf x11-common
x11proto-core-dev x11proto-input-dev x11proto-kb-dev xtrans-dev zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
groff krb5-doc rng-tools libgd-tools gnutls-bin krb5-user postgresql-doc-9.0
less www-browser libmail-box-perl
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
libsasl2-modules libssl-doc xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cdbs comerr-dev debhelper emboss-lib file fontconfig-config
gettext gettext-base groff-base html2text intltool-debian krb5-multidev
libcroco3 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev
libfreetype6 libfreetype6-dev libgcrypt11 libgd2-xpm libgd2-xpm-dev
libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2 libgssrpc4
libhpdf-2.1.0 libjpeg62 libjpeg62-dev libk5crypto3 libkadm5clnt-mit8
libkadm5srv-mit8 libkdb5-5 libkeyutils1 libkrb5-3 libkrb5-dev
libkrb5support0 libldap-2.4-2 libmagic1 libmysqlclient-dev libmysqlclient16
libpcre3 libpipeline1 libpng12-0 libpng12-dev libpopt0 libpq-dev libpq5
libpthread-stubs0 libpthread-stubs0-dev libsasl2-2 libssl-dev libssl1.0.0
libtasn1-3 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 man-db
mysql-common pkg-config po-debconf
sbuild-build-depends-embassy-domainatrix-dummy ttf-dejavu-core ucf
x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xtrans-dev
zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/36.5 MB of archives.
After this operation, 111 MB of additional disk space will be used.
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All runlevel operations denied by policy
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Setting up fontconfig-config (2.8.0-2.2) ...
Setting up libfontconfig1 (2.8.0-2.2) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libpng12-0 (1.2.44-2) ...
Setting up libgd2-xpm (2.0.36~rc1~dfsg-5) ...
Setting up libhpdf-2.1.0 (2.1.0+dfsg-1) ...
Setting up mysql-common (5.1.56-1) ...
Setting up libmysqlclient16 (5.1.56-1) ...
Setting up libpq5 (9.0.4-1+b1) ...
Setting up emboss-lib (6.3.1-6) ...
Setting up comerr-dev (2.1-1.41.12-4) ...
Setting up krb5-multidev (1.9+dfsg-1+b1) ...
Setting up libexpat1-dev (2.0.1-7) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libfreetype6-dev (2.4.4-1) ...
Setting up pkg-config (0.25-1.1) ...
Setting up libfontconfig1-dev (2.8.0-2.2) ...
Setting up libjpeg62-dev (6b1-1) ...
Setting up libpng12-dev (1.2.44-2) ...
Setting up libgd2-xpm-dev (2.0.36~rc1~dfsg-5) ...
Setting up libmysqlclient-dev (5.1.56-1) ...
Setting up libssl-dev (1.0.0d-2) ...
Setting up libkrb5-dev (1.9+dfsg-1+b1) ...
Setting up libpq-dev (9.0.4-1+b1) ...
Setting up sbuild-build-depends-embassy-domainatrix-dummy (0.invalid.0) ...
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? Build environment ?
????????????????????????????????????????????????????????????????????????????????
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 libc6-dev_2.13-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-5
Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 comerr-dev_2.1-1.41.12-4 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 emboss-lib_6.3.1-6 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 krb5-multidev_1.9+dfsg-1+b1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libfontconfig1_2.8.0-2.2 libfontconfig1-dev_2.8.0-2.2 libfreetype6_2.4.4-1 libfreetype6-dev_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgcrypt11_1.4.6-5 libgd2-xpm_2.0.36~rc1~dfsg-5 libgd2-xpm-dev_2.0.36~rc1~dfsg-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-7 libgpg-error0_1.10-0.3 libgssapi-krb5-2_1.9+dfsg-1+b1 libgssrpc4_1.9+dfsg-1+b1 libhpdf-2.1.0_2.1.0+dfsg-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libk5crypto3_1.9+dfsg-1+b1 libkadm5clnt-mit8_1.9+dfsg-1+b1 libkadm5srv-mit8_1.9+dfsg-1+b1 libkdb5-5_1.9+dfsg-1+b1 libkeyutils1_1.4-4 libkrb5-3_1.9+dfsg-1+b1 libkrb5-dev_1.9+dfsg-1+b1 libkrb5support0_1.9+dfsg-1+b1 libldap-2.4-2_2.4.25-1+b1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libmysqlclient-dev_5.1.56-1 libmysqlclient16_5.1.56-1 libncurses5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpq-dev_9.0.4-1+b1 libpq5_9.0.4-1+b1 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline6_6.2-1 libsasl2-2_2.1.23.dfsg1-8 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libss2_1.41.12-4 libssl-dev_1.0.0d-2 libssl1.0.0_1.0.0d-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libswitch-perl_2.16-1 libtasn1-3_2.9-3 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libx11-dev_2:1.4.3-1 libxau-dev_1:1.0.6-1 libxau6_1:1.0.6-1 libxcb1_1.7-2 libxcb1-dev_1.7-2 libxdmcp-dev_1:1.1.0-1 libxdmcp6_1:1.1.0-1 libxml2_2.7.8.dfsg-2+b1 libxpm-dev_1:3.5.9-1 libxpm4_1:3.5.9-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 mysql-common_5.1.56-1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 pkg-config_0.25-1.1 po-debconf_1.0.16+nmu1 readline-common_6.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-embassy-domainatrix-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 util-linux_2.17.2-9.1 x11-common_1:7.6+6 x11proto-core-dev_7.0.21-2 x11proto-input-dev_2.0.1-1 x11proto-kb-dev_1.0.5-1 xtrans-dev_1.2.6-1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
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? Build ?
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Unpack source
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gpgv: keyblock resource `/var/lib/sbuild/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed May 11 06:21:56 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./embassy-domainatrix_0.1.0+20100721-3.dsc
dpkg-source: info: extracting embassy-domainatrix in embassy-domainatrix-0.1.0+20100721
dpkg-source: info: unpacking embassy-domainatrix_0.1.0+20100721.orig.tar.gz
dpkg-source: info: applying embassy-domainatrix_0.1.0+20100721-3.diff.gz
Check disc space
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Sufficient free space for build
dpkg-buildpackage
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dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package embassy-domainatrix
dpkg-buildpackage: source version 0.1.0+20100721-3
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build embassy-domainatrix-0.1.0+20100721
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . -k distclean
make[1]: *** No rule to make target `distclean'.
make[1]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make[1]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make: [makefile-clean] Error 2 (ignored)
rm -f debian/stamp-autotools
rmdir --ignore-fail-on-non-empty .
rmdir: failed to remove `.': Invalid argument
make: [makefile-clean] Error 1 (ignored)
for i in ./config.guess ./config.sub ; do \
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
dh_clean
dh_clean: Compatibility levels before 5 are deprecated.
rm -f debian/stamp-autotools-files
dpkg-source -b embassy-domainatrix-0.1.0+20100721
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
dpkg-source: info: building embassy-domainatrix using existing embassy-domainatrix_0.1.0+20100721.orig.tar.gz
dpkg-source: info: building embassy-domainatrix in embassy-domainatrix_0.1.0+20100721-3.diff.gz
dpkg-source: info: building embassy-domainatrix in embassy-domainatrix_0.1.0+20100721-3.dsc
debian/rules build
test -x debian/rules
mkdir -p "."
echo 5 >debian/compat
if test -e /usr/share/misc/config.guess ; then \
for i in ./config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i ; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ; \
fi ; \
done ; \
fi
touch debian/stamp-autotools-files
chmod a+x /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/./configure
mkdir -p .
cd . && CFLAGS="-g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS=" -Wl,--as-needed" /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/embassy-domainatrix" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --enable-systemlibs
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gawk... (cached) mawk
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) none
checking how to run the C preprocessor... gcc -E
checking for inline... inline
checking whether byte ordering is bigendian... no
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for X... libraries , headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... no
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for pid_t... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking whether getpgrp requires zero arguments... yes
checking for strftime... yes
checking vfork.h usability... no
checking vfork.h presence... no
checking for vfork.h... no
checking for fork... yes
checking for vfork... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for vprintf... yes
checking for _doprnt... no
checking for strdup... yes
checking for strstr... yes
checking for strchr... yes
checking for erand48... yes
checking for memmove... yes
checking X11/Xlib.h usability... yes
checking X11/Xlib.h presence... yes
checking for X11/Xlib.h... yes
checking for socket in -lc... yes
checking for main in -lm... yes
checking if docroot is given... no
checking if gcc profiling is selected... no
checking if java include directory given... no
checking if java OS include directory given... no
checking whether to look for pdf support... yes
checking for HPDF_New in -lhpdf... no
No pdf support (libhpdf) found.
checking if png driver is wanted... yes
checking for inflateEnd in -lz... yes
checking for png_destroy_read_struct in -lpng... yes
checking for gdImageCreateFromPng in -lgd... yes
PNG libraries found
checking if any authorisation type is given... no
checking if Linux x86_64... yes
checking for mysql_config... /usr/bin/mysql_config
checking for MySQL libraries... yes
checking for pg_config... /usr/bin/pg_config
checking for PostgreSQL libraries... yes
checking for large file support... done
checking for purify... no
checking for cygwin... no
checking if any threading type is given... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating emboss_acd/Makefile
config.status: creating emboss_doc/Makefile
config.status: creating emboss_doc/html/Makefile
config.status: creating emboss_doc/text/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
touch debian/stamp-autotools
/usr/bin/make -C .
make[1]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
Making all in src
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/src'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"DOMAINATRIX\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c cathparse.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o cathparse cathparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o cathparse cathparse.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"DOMAINATRIX\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c domainnr.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o domainnr domainnr.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o domainnr domainnr.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"DOMAINATRIX\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c domainreso.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o domainreso domainreso.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o domainreso domainreso.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"DOMAINATRIX\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c domainseqs.c
domainseqs.c: In function 'domainseqs_FindDomainLimits':
domainseqs.c:577:11: warning: variable 'no_gaps_pdb' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o domainseqs domainseqs.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o domainseqs domainseqs.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"DOMAINATRIX\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c domainsse.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o domainsse domainsse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o domainsse domainsse.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"DOMAINATRIX\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c scopparse.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o scopparse scopparse.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o scopparse scopparse.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"DOMAINATRIX\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c ssematch.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ssematch ssematch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o ssematch ssematch.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/src'
Making all in emboss_acd
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_acd'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_acd'
Making all in emboss_doc
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
Making all in html
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/html'
make[3]: Nothing to be done for `all'.
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Making all in text
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/text'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/text'
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make[1]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_clean -k
dh_clean: dh_clean -k is deprecated; use dh_prep instead
dh_installdirs -A
mkdir -p "."
if test -e /usr/share/misc/config.guess ; then \
for i in ./config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i ; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ; \
fi ; \
done ; \
fi
DEB_MAKE_CHECK_TARGET unset, not running checks
/usr/bin/make -C . install DESTDIR=/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix/
make[1]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
Making install in src
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/src'
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/src'
test -z "/usr/bin" || /bin/mkdir -p "/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin"
/bin/bash ../libtool --mode=install /usr/bin/install -c cathparse domainnr domainreso domainseqs domainsse scopparse ssematch '/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin'
libtool: install: /usr/bin/install -c cathparse /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin/cathparse
libtool: install: /usr/bin/install -c domainnr /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin/domainnr
libtool: install: /usr/bin/install -c domainreso /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin/domainreso
libtool: install: /usr/bin/install -c domainseqs /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin/domainseqs
libtool: install: /usr/bin/install -c domainsse /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin/domainsse
libtool: install: /usr/bin/install -c scopparse /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin/scopparse
libtool: install: /usr/bin/install -c ssematch /?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/bin/ssematch
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/src'
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/src'
Making install in emboss_acd
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_acd'
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_acd'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/EMBOSS/acd" || /bin/mkdir -p "/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/share/EMBOSS/acd"
/usr/bin/install -c -m 644 cathparse.acd domainnr.acd domainreso.acd domainseqs.acd domainsse.acd scopparse.acd ssematch.acd '/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/share/EMBOSS/acd'
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_acd'
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_acd'
Making install in emboss_doc
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
Making install in html
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/html'
make[4]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/html'
make[4]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/EMBOSS/doc/html/embassy/domainatrix" || /bin/mkdir -p "/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/share/EMBOSS/doc/html/embassy/domainatrix"
/usr/bin/install -c -m 644 index.html cathparse.html domainnr.html domainreso.html domainseqs.html domainsse.html scopparse.html ssematch.html '/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/share/EMBOSS/doc/html/embassy/domainatrix'
make[4]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/html'
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/html'
Making install in text
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/text'
make[4]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/text'
make[4]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/EMBOSS/doc/programs/text" || /bin/mkdir -p "/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/share/EMBOSS/doc/programs/text"
/usr/bin/install -c -m 644 cathparse.txt domainnr.txt domainreso.txt domainseqs.txt domainsse.txt scopparse.txt ssematch.txt '/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/debian/embassy-domainatrix//usr/share/EMBOSS/doc/programs/text'
make[4]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/text'
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc/text'
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[4]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721/emboss_doc'
make[2]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make[3]: Entering directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make[2]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
make[1]: Leaving directory `/?BUILDDIR?/embassy-domainatrix-0.1.0+20100721'
touch debian/stamp-makefile-install
Adding cdbs dependencies to debian/embassy-domainatrix.substvars
dh_installdirs -pembassy-domainatrix
dh_installdocs -pembassy-domainatrix
dh_installexamples -pembassy-domainatrix
dh_installman -pembassy-domainatrix
dh_installinfo -pembassy-domainatrix
dh_installmenu -pembassy-domainatrix
dh_installcron -pembassy-domainatrix
dh_installinit -pembassy-domainatrix
dh_installdebconf -pembassy-domainatrix
dh_installemacsen -pembassy-domainatrix
dh_installcatalogs -pembassy-domainatrix
dh_installpam -pembassy-domainatrix
dh_installlogrotate -pembassy-domainatrix
dh_installlogcheck -pembassy-domainatrix
dh_installgsettings -pembassy-domainatrix
dh_installchangelogs -pembassy-domainatrix ./ChangeLog
dh_installudev -pembassy-domainatrix
dh_lintian -pembassy-domainatrix
dh_bugfiles -pembassy-domainatrix
dh_install -pembassy-domainatrix
dh_link -pembassy-domainatrix
dh_installmime -pembassy-domainatrix
dh_strip -pembassy-domainatrix
dh_compress -pembassy-domainatrix
dh_fixperms -pembassy-domainatrix
dh_makeshlibs -pembassy-domainatrix
dh_installdeb -pembassy-domainatrix
dh_perl -pembassy-domainatrix
dh_shlibdeps -pembassy-domainatrix
dpkg-shlibdeps: warning: dependency on libensembl.so.6 could be avoided if "debian/embassy-domainatrix/usr/bin/domainseqs debian/embassy-domainatrix/usr/bin/domainsse debian/embassy-domainatrix/usr/bin/cathparse debian/embassy-domainatrix/usr/bin/domainreso debian/embassy-domainatrix/usr/bin/ssematch debian/embassy-domainatrix/usr/bin/domainnr debian/embassy-domainatrix/usr/bin/scopparse" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libepcre.so.7 could be avoided if "debian/embassy-domainatrix/usr/bin/domainseqs debian/embassy-domainatrix/usr/bin/domainsse debian/embassy-domainatrix/usr/bin/cathparse debian/embassy-domainatrix/usr/bin/domainreso debian/embassy-domainatrix/usr/bin/ssematch debian/embassy-domainatrix/usr/bin/domainnr debian/embassy-domainatrix/usr/bin/scopparse" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libeplplot.so.3 could be avoided if "debian/embassy-domainatrix/usr/bin/domainseqs debian/embassy-domainatrix/usr/bin/domainsse debian/embassy-domainatrix/usr/bin/cathparse debian/embassy-domainatrix/usr/bin/domainreso debian/embassy-domainatrix/usr/bin/ssematch debian/embassy-domainatrix/usr/bin/domainnr debian/embassy-domainatrix/usr/bin/scopparse" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libajaxdb.so.6 could be avoided if "debian/embassy-domainatrix/usr/bin/domainseqs debian/embassy-domainatrix/usr/bin/domainsse debian/embassy-domainatrix/usr/bin/cathparse debian/embassy-domainatrix/usr/bin/domainreso debian/embassy-domainatrix/usr/bin/ssematch debian/embassy-domainatrix/usr/bin/domainnr debian/embassy-domainatrix/usr/bin/scopparse" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libajaxg.so.6 could be avoided if "debian/embassy-domainatrix/usr/bin/domainseqs debian/embassy-domainatrix/usr/bin/domainsse debian/embassy-domainatrix/usr/bin/cathparse debian/embassy-domainatrix/usr/bin/domainreso debian/embassy-domainatrix/usr/bin/ssematch debian/embassy-domainatrix/usr/bin/domainnr debian/embassy-domainatrix/usr/bin/scopparse" were not uselessly linked against it (they use none of its symbols).
dh_gencontrol -pembassy-domainatrix
dh_md5sums -pembassy-domainatrix
dh_builddeb -pembassy-domainatrix
dpkg-deb: building package `embassy-domainatrix' in `../embassy-domainatrix_0.1.0+20100721-3_amd64.deb'.
dpkg-genchanges >../embassy-domainatrix_0.1.0+20100721-3_amd64.changes
dpkg-genchanges: not including original source code in upload
dpkg-source --after-build embassy-domainatrix-0.1.0+20100721
dpkg-buildpackage: binary and diff upload (original source NOT included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110511-1531
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
embassy-domainatrix_0.1.0+20100721-3_amd64.changes:
???????????????????????????????????????????????????
Format: 1.8
Date: Wed, 11 May 2011 14:37:28 +0900
Source: embassy-domainatrix
Binary: embassy-domainatrix
Architecture: source amd64
Version: 0.1.0+20100721-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
embassy-domainatrix - Extra EMBOSS commands to handle domain classification file
Closes: 625162
Changes:
embassy-domainatrix (0.1.0+20100721-3) unstable; urgency=low
.
* Set RPATH with ?-Wl,--rpath? as GCC 4.6 does not accept ?-R? anymore.
(debian/rules) Closes: #625162, LP: #770920.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Updated debian/embassy-domainatrix.lintian-overrides for lintian 2.5.
* debian/copyright validated with config-edit.
Checksums-Sha1:
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06a3f96ff5bf23fc6c79fc999a49f6547d17c577 8181 embassy-domainatrix_0.1.0+20100721-3.diff.gz
7e509a18f621f4368d6f056e60544fd2114ff449 93282 embassy-domainatrix_0.1.0+20100721-3_amd64.deb
Checksums-Sha256:
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d2dacabffb4584ccc90c7e529e61d1ec3943cd5430dbab5bd3a1c7419eb035ae 8181 embassy-domainatrix_0.1.0+20100721-3.diff.gz
a0cb8d033c6cfc0be6526907006c37d046c7f2e7b1294a51833712384dd8109c 93282 embassy-domainatrix_0.1.0+20100721-3_amd64.deb
Files:
8f27cfdd66bb9f1c1f125348f9c75fd5 1349 science optional embassy-domainatrix_0.1.0+20100721-3.dsc
40cf7ed51e7f237da88f85bceb12cb91 8181 science optional embassy-domainatrix_0.1.0+20100721-3.diff.gz
7afbc6a7307df578885b39a3da4c5ffa 93282 science optional embassy-domainatrix_0.1.0+20100721-3_amd64.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
embassy-domainatrix_0.1.0+20100721-3_amd64.deb
??????????????????????????????????????????????
new debian package, version 2.0.
size 93282 bytes: control archive= 1990 bytes.
1118 bytes, 22 lines control
3133 bytes, 42 lines md5sums
Package: embassy-domainatrix
Version: 0.1.0+20100721-3
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 580
Depends: emboss-lib (>= 6.3.1-6~), libc6 (>= 2.2.5), emboss-lib (<< 6.3.2~)
Recommends: emboss
Suggests: embassy
Section: science
Priority: optional
Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMAINATRIX
Description: Extra EMBOSS commands to handle domain classification file
The DOMAINATRIX programs were developed by Jon Ison and colleagues at MRC HGMP
for their protein domain research. They are included as an EMBASSY package as
a work in progress.
.
Applications in the current domainatrix release are cathparse (generates DCF
file from raw CATH files), domainnr (removes redundant domains from a DCF
file), domainreso (removes low resolution domains from a DCF file), domainseqs
(adds sequence records to a DCF file), domainsse (adds secondary structure
records to a DCF file), scopparse (generates DCF file from raw SCOP files) and
ssematch (searches a DCF file for secondary structure matches).
drwxr-xr-x root/root 0 2011-05-11 15:31 ./
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/bin/
-rwxr-xr-x root/root 8912 2011-05-11 15:31 ./usr/bin/domainreso
-rwxr-xr-x root/root 6864 2011-05-11 15:31 ./usr/bin/scopparse
-rwxr-xr-x root/root 14072 2011-05-11 15:31 ./usr/bin/domainnr
-rwxr-xr-x root/root 6856 2011-05-11 15:31 ./usr/bin/cathparse
-rwxr-xr-x root/root 18200 2011-05-11 15:31 ./usr/bin/domainseqs
-rwxr-xr-x root/root 9112 2011-05-11 15:31 ./usr/bin/domainsse
-rwxr-xr-x root/root 13096 2011-05-11 15:31 ./usr/bin/ssematch
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/man/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/man/man1/
-rw-r--r-- root/root 1436 2011-05-11 15:31 ./usr/share/man/man1/cathparse.1e.gz
-rw-r--r-- root/root 1537 2011-05-11 15:31 ./usr/share/man/man1/domainsse.1e.gz
-rw-r--r-- root/root 1388 2011-05-11 15:31 ./usr/share/man/man1/libscanout.1e.gz
-rw-r--r-- root/root 1843 2011-05-11 15:31 ./usr/share/man/man1/ssematch.1e.gz
-rw-r--r-- root/root 2329 2011-05-11 15:31 ./usr/share/man/man1/domainnr.1e.gz
-rw-r--r-- root/root 1979 2011-05-11 15:31 ./usr/share/man/man1/domainseqs.1e.gz
-rw-r--r-- root/root 1573 2011-05-11 15:31 ./usr/share/man/man1/domainreso.1e.gz
-rw-r--r-- root/root 2066 2011-05-11 15:31 ./usr/share/man/man1/libscan.1e.gz
-rw-r--r-- root/root 1630 2011-05-11 15:31 ./usr/share/man/man1/scopparse.1e.gz
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/acd/
-rw-r--r-- root/root 3677 2011-05-11 15:31 ./usr/share/EMBOSS/acd/scopparse.acd
-rw-r--r-- root/root 6615 2011-05-11 15:31 ./usr/share/EMBOSS/acd/ssematch.acd
-rw-r--r-- root/root 2953 2011-05-11 15:31 ./usr/share/EMBOSS/acd/domainreso.acd
-rw-r--r-- root/root 3078 2011-05-11 15:31 ./usr/share/EMBOSS/acd/domainsse.acd
-rw-r--r-- root/root 5344 2011-05-11 15:31 ./usr/share/EMBOSS/acd/domainseqs.acd
-rw-r--r-- root/root 8797 2011-05-11 15:31 ./usr/share/EMBOSS/acd/domainnr.acd
-rw-r--r-- root/root 2758 2011-05-11 15:31 ./usr/share/EMBOSS/acd/cathparse.acd
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/doc/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/
-rw-r--r-- root/root 11430 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/domainseqs.txt
-rw-r--r-- root/root 9238 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/cathparse.txt
-rw-r--r-- root/root 6468 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/domainreso.txt
-rw-r--r-- root/root 11426 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/scopparse.txt
-rw-r--r-- root/root 12279 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/ssematch.txt
-rw-r--r-- root/root 13674 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/domainnr.txt
-rw-r--r-- root/root 7902 2011-05-11 15:31 ./usr/share/EMBOSS/doc/programs/text/domainsse.txt
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/
-rw-r--r-- root/root 2254 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/index.html
-rw-r--r-- root/root 27727 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/domainsse.html
-rw-r--r-- root/root 32954 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/domainseqs.html
-rw-r--r-- root/root 37687 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/domainnr.html
-rw-r--r-- root/root 30371 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/cathparse.html
-rw-r--r-- root/root 33246 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/scopparse.html
-rw-r--r-- root/root 23299 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/domainreso.html
-rw-r--r-- root/root 32965 2011-05-11 15:31 ./usr/share/EMBOSS/doc/html/embassy/domainatrix/ssematch.html
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/doc/embassy-domainatrix/
-rw-r--r-- root/root 128 2009-01-26 23:55 ./usr/share/doc/embassy-domainatrix/changelog.gz
-rw-r--r-- root/root 1112 2011-05-11 15:31 ./usr/share/doc/embassy-domainatrix/copyright
-rw-r--r-- root/root 1047 2011-05-11 15:31 ./usr/share/doc/embassy-domainatrix/changelog.Debian.gz
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/lintian/
drwxr-xr-x root/root 0 2011-05-11 15:31 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 185 2011-05-11 15:31 ./usr/share/lintian/overrides/embassy-domainatrix
????????????????????????????????????????????????????????????????????????????????
? Post Build ?
????????????????????????????????????????????????????????????????????????????????
????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging /?CHROOT?/?BUILDDIR?
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
bsdmainutils* cdbs* comerr-dev* debhelper* emboss-lib* file*
fontconfig-config* gettext* gettext-base* groff-base* html2text*
intltool-debian* krb5-multidev* libcroco3* libexpat1* libexpat1-dev*
libfontconfig1* libfontconfig1-dev* libfreetype6* libfreetype6-dev*
libgcrypt11* libgd2-xpm* libgd2-xpm-dev* libglib2.0-0* libgnutls26*
libgpg-error0* libgssapi-krb5-2* libgssrpc4* libhpdf-2.1.0* libjpeg62*
libjpeg62-dev* libk5crypto3* libkadm5clnt-mit8* libkadm5srv-mit8* libkdb5-5*
libkeyutils1* libkrb5-3* libkrb5-dev* libkrb5support0* libldap-2.4-2*
libmagic1* libmysqlclient-dev* libmysqlclient16* libpcre3* libpipeline1*
libpng12-0* libpng12-dev* libpopt0* libpq-dev* libpq5* libpthread-stubs0*
libpthread-stubs0-dev* libsasl2-2* libssl-dev* libssl1.0.0* libtasn1-3*
libunistring0* libx11-6* libx11-data* libx11-dev* libxau-dev* libxau6*
libxcb1* libxcb1-dev* libxdmcp-dev* libxdmcp6* libxml2* libxpm-dev* libxpm4*
man-db* mysql-common* pkg-config* po-debconf*
sbuild-build-depends-core-dummy*
sbuild-build-depends-embassy-domainatrix-dummy* ttf-dejavu-core* ucf*
x11-common* x11proto-core-dev* x11proto-input-dev* x11proto-kb-dev*
xtrans-dev* zlib1g-dev*
0 upgraded, 0 newly installed, 83 to remove and 0 not upgraded.
After this operation, 111 MB disk space will be freed.
(Reading database ... 15224 files and directories currently installed.)
Removing sbuild-build-depends-embassy-domainatrix-dummy ...
Removing cdbs ...
Removing debhelper ...
Removing man-db ...
Purging configuration files for man-db ...
Removing bsdmainutils ...
Purging configuration files for bsdmainutils ...
Removing libpq-dev ...
Removing libkrb5-dev ...
Removing krb5-multidev ...
Removing comerr-dev ...
Removing emboss-lib ...
Purging configuration files for emboss-lib ...
Removing file ...
Removing libgd2-xpm-dev ...
Removing libgd2-xpm ...
Purging configuration files for libgd2-xpm ...
Removing libfontconfig1-dev ...
Removing libfontconfig1 ...
Purging configuration files for libfontconfig1 ...
Removing fontconfig-config ...
Purging configuration files for fontconfig-config ...
Removing po-debconf ...
Removing intltool-debian ...
Removing gettext ...
Removing gettext-base ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
Purging configuration files for html2text ...
Removing libcroco3 ...
Purging configuration files for libcroco3 ...
Removing libexpat1-dev ...
Removing libexpat1 ...
Purging configuration files for libexpat1 ...
Removing libfreetype6-dev ...
Removing libfreetype6 ...
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All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
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????????????????????????????????????????????????????????????????????????????????
? Summary ?
????????????????????????????????????????????????????????????????????????????????
Architecture: amd64
Build-Space: 3620
Build-Time: 13
Distribution: unstable
Install-Time: 88
Job: embassy-domainatrix_0.1.0+20100721-3.dsc
Package: embassy-domainatrix
Package-Time: 104
Source-Version: 0.1.0+20100721-3
Space: 3620
Status: successful
Version: 0.1.0+20100721-3
????????????????????????????????????????????????????????????????????????????????
Finished at 20110511-1531
Build needed 00:01:44, 3620k disc space
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