[Debian-med-packaging] embassy-phylip_3.69+20100721-3_amd64.changes ACCEPTED into unstable
Charles Plessy
plessy at debian.org
Fri May 13 03:54:42 UTC 2011
Le Fri, May 13, 2011 at 03:47:12AM +0000, Debian FTP Masters a écrit :
>
> Accepted:
> embassy-phylip_3.69+20100721-3.diff.gz
> to non-free/e/embassy-phylip/embassy-phylip_3.69+20100721-3.diff.gz
> embassy-phylip_3.69+20100721-3.dsc
> to non-free/e/embassy-phylip/embassy-phylip_3.69+20100721-3.dsc
> embassy-phylip_3.69+20100721-3_amd64.deb
> to non-free/e/embassy-phylip/embassy-phylip_3.69+20100721-3_amd64.deb
Build log.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
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? embassy-phylip 3.69+20100721-3 (amd64) 13 mai 2011 11:19 ?
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Package: embassy-phylip
Version: 3.69+20100721-3
Source Version: 3.69+20100721-3
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/embassy-phylip-WC9TSy' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-fa318ebe-3058-4367-b5a7-32be546e387a' with '«CHROOT»'
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? Update chroot ?
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Hit http://ftp.riken.jp sid InRelease
Hit http://ftp.riken.jp sid/main amd64 Packages/DiffIndex
Hit http://ftp.riken.jp sid/main TranslationIndex
Ign http://ftp.riken.jp sid/main amd64 2011-05-12-0212.15.pdiff
Hit http://ftp.riken.jp sid/main amd64
Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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embassy-phylip_3.69+20100721-3.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-WnZfYq/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously deselected package sbuild-build-depends-core-dummy.
(Reading database ... 10767 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 7), autotools-dev, libxaw7-dev, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~), libgd2-xpm-dev, libmysqlclient-dev, libpq-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 7), autotools-dev, libxaw7-dev, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~), libgd2-xpm-dev, libmysqlclient-dev, libpq-dev
dpkg-deb: building package `sbuild-build-depends-embassy-phylip-dummy' in `/«BUILDDIR»/resolver-hA72ds/apt_archive/sbuild-build-depends-embassy-phylip-dummy.deb'.
OK
Reading package lists...
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? Install embassy-phylip build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
autotools-dev bsdmainutils cdbs comerr-dev debhelper emboss-lib file
fontconfig-config gettext gettext-base groff-base html2text intltool-debian
krb5-multidev libcroco3 libexpat1 libexpat1-dev libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libgcrypt11 libgd2-xpm
libgd2-xpm-dev libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2
libgssrpc4 libhpdf-2.1.0 libice-dev libice6 libjpeg62 libjpeg62-dev
libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-5 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 libldap-2.4-2 libmagic1
libmysqlclient-dev libmysqlclient16 libpcre3 libpipeline1 libpng12-0
libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0
libpthread-stubs0-dev libsasl2-2 libsm-dev libsm6 libssl-dev libssl1.0.0
libtasn1-3 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxaw7 libxaw7-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxml2 libxmu-dev libxmu-headers libxmu6 libxpm-dev libxpm4
libxt-dev libxt6 man-db mysql-common pkg-config po-debconf ttf-dejavu-core
ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev
x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
groff krb5-doc rng-tools libgd-tools gnutls-bin krb5-user postgresql-doc-9.0
less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
libsasl2-modules libssl-doc xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autotools-dev bsdmainutils cdbs comerr-dev debhelper emboss-lib file
fontconfig-config gettext gettext-base groff-base html2text intltool-debian
krb5-multidev libcroco3 libexpat1 libexpat1-dev libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libgcrypt11 libgd2-xpm
libgd2-xpm-dev libglib2.0-0 libgnutls26 libgpg-error0 libgssapi-krb5-2
libgssrpc4 libhpdf-2.1.0 libice-dev libice6 libjpeg62 libjpeg62-dev
libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-5 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 libldap-2.4-2 libmagic1
libmysqlclient-dev libmysqlclient16 libpcre3 libpipeline1 libpng12-0
libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0
libpthread-stubs0-dev libsasl2-2 libsm-dev libsm6 libssl-dev libssl1.0.0
libtasn1-3 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxaw7 libxaw7-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxml2 libxmu-dev libxmu-headers libxmu6 libxpm-dev libxpm4
libxt-dev libxt6 man-db mysql-common pkg-config po-debconf
sbuild-build-depends-embassy-phylip-dummy ttf-dejavu-core ucf x11-common
x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/39.0 MB of archives.
After this operation, 119 MB of additional disk space will be used.
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Setting up x11-common (1:7.6+6) ...
All runlevel operations denied by policy
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Setting up libxdmcp6 (1:1.1.0-1) ...
Setting up libxcb1 (1.7-2) ...
Setting up libx11-data (2:1.4.3-1) ...
Setting up libx11-6 (2:1.4.3-1) ...
Setting up libxpm4 (1:3.5.9-1) ...
Setting up libxau-dev (1:1.0.6-1) ...
Setting up libxdmcp-dev (1:1.1.0-1) ...
Setting up x11proto-input-dev (2.0.1-1) ...
Setting up x11proto-kb-dev (1.0.5-1) ...
Setting up xtrans-dev (1.2.6-1) ...
Setting up libpthread-stubs0 (0.3-2) ...
Setting up libpthread-stubs0-dev (0.3-2) ...
Setting up libxcb1-dev (1.7-2) ...
Setting up libx11-dev (2:1.4.3-1) ...
Setting up libxpm-dev (1:3.5.9-1) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-5) ...
Setting up libpipeline1 (1.2.0-1) ...
Setting up libpopt0 (1.16-1) ...
Setting up libssl1.0.0 (1.0.0d-2) ...
Setting up man-db (2.6.0.2-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
Setting up gettext-base (0.18.1.1-3) ...
Setting up libgpg-error0 (1.10-0.3) ...
Setting up libgcrypt11 (1.4.6-5) ...
Setting up libtasn1-3 (2.9-3) ...
Setting up libgnutls26 (2.10.5-1+b1) ...
Setting up libkeyutils1 (1.4-4) ...
Setting up libkrb5support0 (1.9+dfsg-1+b1) ...
Setting up libk5crypto3 (1.9+dfsg-1+b1) ...
Setting up libkrb5-3 (1.9+dfsg-1+b1) ...
Setting up libgssapi-krb5-2 (1.9+dfsg-1+b1) ...
Setting up libgssrpc4 (1.9+dfsg-1+b1) ...
Setting up libkadm5clnt-mit8 (1.9+dfsg-1+b1) ...
Setting up libkdb5-5 (1.9+dfsg-1+b1) ...
Setting up libkadm5srv-mit8 (1.9+dfsg-1+b1) ...
Setting up libsasl2-2 (2.1.23.dfsg1-8) ...
Setting up libldap-2.4-2 (2.4.25-1+b1) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2+b1) ...
Setting up ucf (3.0025+nmu2) ...
Setting up autotools-dev (20110511.1) ...
Setting up html2text (1.3.2a-15) ...
Setting up libglib2.0-0 (2.28.6-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.1.6) ...
Setting up cdbs (0.4.93) ...
Setting up libexpat1 (2.0.1-7) ...
Setting up libfreetype6 (2.4.4-1) ...
Setting up ttf-dejavu-core (2.33-1) ...
Setting up fontconfig-config (2.8.0-2.2) ...
Setting up libfontconfig1 (2.8.0-2.2) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libpng12-0 (1.2.44-2) ...
Setting up libgd2-xpm (2.0.36~rc1~dfsg-5) ...
Setting up libhpdf-2.1.0 (2.1.0+dfsg-1) ...
Setting up mysql-common (5.1.56-1) ...
Setting up libmysqlclient16 (5.1.56-1) ...
Setting up libpq5 (9.0.4-1+b1) ...
Setting up emboss-lib (6.3.1-6) ...
Setting up comerr-dev (2.1-1.41.12-4) ...
Setting up krb5-multidev (1.9+dfsg-1+b1) ...
Setting up libexpat1-dev (2.0.1-7) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libfreetype6-dev (2.4.4-1) ...
Setting up pkg-config (0.25-1.1) ...
Setting up libfontconfig1-dev (2.8.0-2.2) ...
Setting up libjpeg62-dev (6b1-1) ...
Setting up libpng12-dev (1.2.44-2) ...
Setting up libgd2-xpm-dev (2.0.36~rc1~dfsg-5) ...
Setting up libmysqlclient-dev (5.1.56-1) ...
Setting up libssl-dev (1.0.0d-2) ...
Setting up libkrb5-dev (1.9+dfsg-1+b1) ...
Setting up libpq-dev (9.0.4-1+b1) ...
Setting up libsm6 (2:1.2.0-1) ...
Setting up libsm-dev (2:1.2.0-1) ...
Setting up libxext6 (2:1.3.0-1) ...
Setting up libxt6 (1:1.1.1-1) ...
Setting up libxmu6 (2:1.1.0-2) ...
Setting up libxaw7 (2:1.0.9-2) ...
Setting up x11proto-xext-dev (7.2.0-2) ...
Setting up xorg-sgml-doctools (1:1.7-1) ...
Setting up libxext-dev (2:1.3.0-1) ...
Setting up libxt-dev (1:1.1.1-1) ...
Setting up libxmu-headers (2:1.1.0-2) ...
Setting up libxmu-dev (2:1.1.0-2) ...
Setting up libxaw7-dev (2:1.0.9-2) ...
Setting up sbuild-build-depends-embassy-phylip-dummy (0.invalid.0) ...
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? Build environment ?
????????????????????????????????????????????????????????????????????????????????
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 libc6-dev_2.13-4 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-5
Package versions: apt_0.8.14.1 autotools-dev_20110511.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 comerr-dev_2.1-1.41.12-4 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 emboss-lib_6.3.1-6 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 krb5-multidev_1.9+dfsg-1+b1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libfontconfig1_2.8.0-2.2 libfontconfig1-dev_2.8.0-2.2 libfreetype6_2.4.4-1 libfreetype6-dev_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgcrypt11_1.4.6-5 libgd2-xpm_2.0.36~rc1~dfsg-5 libgd2-xpm-dev_2.0.36~rc1~dfsg-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-7 libgpg-error0_1.10-0.3 libgssapi-krb5-2_1.9+dfsg-1+b1 libgssrpc4_1.9+dfsg-1+b1 libhpdf-2.1.0_2.1.0+dfsg-1 libice-dev_2:1.0.7-1 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libk5crypto3_1.9+dfsg-1+b1 libkadm5clnt-mit8_1.9+dfsg-1+b1 libkadm5srv-mit8_1.9+dfsg-1+b1 libkdb5-5_1.9+dfsg-1+b1 libkeyutils1_1.4-4 libkrb5-3_1.9+dfsg-1+b1 libkrb5-dev_1.9+dfsg-1+b1 libkrb5support0_1.9+dfsg-1+b1 libldap-2.4-2_2.4.25-1+b1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libmysqlclient-dev_5.1.56-1 libmysqlclient16_5.1.56-1 libncurses5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpq-dev_9.0.4-1+b1 libpq5_9.0.4-1+b1 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline6_6.2-1 libsasl2-2_2.1.23.dfsg1-8 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm-dev_2:1.2.0-1 libsm6_2:1.2.0-1 libss2_1.41.12-4 libssl-dev_1.0.0d-2 libssl1.0.0_1.0.0d-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libswitch-perl_2.16-1 libtasn1-3_2.9-3 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libx11-dev_2:1.4.3-1 libxau-dev_1:1.0.6-1 libxau6_1:1.0.6-1 libxaw7_2:1.0.9-2 libxaw7-dev_2:1.0.9-2 libxcb1_1.7-2 libxcb1-dev_1.7-2 libxdmcp-dev_1:1.1.0-1 libxdmcp6_1:1.1.0-1 libxext-dev_2:1.3.0-1 libxext6_2:1.3.0-1 libxml2_2.7.8.dfsg-2+b1 libxmu-dev_2:1.1.0-2 libxmu-headers_2:1.1.0-2 libxmu6_2:1.1.0-2 libxpm-dev_1:3.5.9-1 libxpm4_1:3.5.9-1 libxt-dev_1:1.1.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 mysql-common_5.1.56-1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 pkg-config_0.25-1.1 po-debconf_1.0.16+nmu1 readline-common_6.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-embassy-phylip-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 util-linux_2.17.2-9.1 x11-common_1:7.6+6 x11proto-core-dev_7.0.21-2 x11proto-input-dev_2.0.1-1 x11proto-kb-dev_1.0.5-1 x11proto-xext-dev_7.2.0-2 xorg-sgml-doctools_1:1.7-1 xtrans-dev_1.2.6-1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
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? Build ?
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Unpack source
?????????????
dpkg-source: warning: extracting unsigned source package (embassy-phylip_3.69+20100721-3.dsc)
dpkg-source: info: extracting embassy-phylip in embassy-phylip-3.69+20100721
dpkg-source: info: unpacking embassy-phylip_3.69+20100721.orig.tar.gz
dpkg-source: info: applying embassy-phylip_3.69+20100721-3.diff.gz
Check disc space
????????????????
Sufficient free space for build
dpkg-buildpackage
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dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package embassy-phylip
dpkg-buildpackage: source version 3.69+20100721-3
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build embassy-phylip-3.69+20100721
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . -k distclean
make[1]: *** No rule to make target `distclean'.
make[1]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make[1]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make: [makefile-clean] Error 2 (ignored)
rm -f debian/stamp-autotools
rmdir --ignore-fail-on-non-empty .
rmdir: failed to remove `.': Invalid argument
make: [makefile-clean] Error 1 (ignored)
for i in ./config.guess ./config.sub ; do \
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
dh_clean
rm -f debian/stamp-autotools-files
dpkg-source -b embassy-phylip-3.69+20100721
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
dpkg-source: info: building embassy-phylip using existing embassy-phylip_3.69+20100721.orig.tar.gz
dpkg-source: info: building embassy-phylip in embassy-phylip_3.69+20100721-3.diff.gz
dpkg-source: info: building embassy-phylip in embassy-phylip_3.69+20100721-3.dsc
debian/rules build
test -x debian/rules
mkdir -p "."
if test -e /usr/share/misc/config.guess ; then \
for i in ./config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i ; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ; \
fi ; \
done ; \
fi
touch debian/stamp-autotools-files
chmod a+x /«BUILDDIR»/embassy-phylip-3.69+20100721/./configure
mkdir -p .
cd . && CFLAGS="-g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS=" -Wl,--as-needed" /«BUILDDIR»/embassy-phylip-3.69+20100721/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/embassy-phylip" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --enable-systemlibs
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gawk... (cached) mawk
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) none
checking how to run the C preprocessor... gcc -E
checking for inline... inline
checking whether byte ordering is bigendian... no
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for X... libraries , headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for pid_t... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking whether getpgrp requires zero arguments... yes
checking for strftime... yes
checking vfork.h usability... no
checking vfork.h presence... no
checking for vfork.h... no
checking for fork... yes
checking for vfork... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for vprintf... yes
checking for _doprnt... no
checking for strdup... yes
checking for strstr... yes
checking for strchr... yes
checking for erand48... yes
checking for memmove... yes
checking X11/Xlib.h usability... yes
checking X11/Xlib.h presence... yes
checking for X11/Xlib.h... yes
checking X11/Xaw/Label.h usability... yes
checking X11/Xaw/Label.h presence... yes
checking for X11/Xaw/Label.h... yes
checking for XawInitializeWidgetSet in -lXaw... yes
checking for XtToolkitInitialize in -lXt... yes
checking for socket in -lc... yes
checking for main in -lm... yes
checking if docroot is given... no
checking if gcc profiling is selected... no
checking if java include directory given... no
checking if java OS include directory given... no
checking whether to look for pdf support... yes
checking for HPDF_New in -lhpdf... no
No pdf support (libhpdf) found.
checking if png driver is wanted... yes
checking for inflateEnd in -lz... yes
checking for png_destroy_read_struct in -lpng... yes
checking for gdImageCreateFromPng in -lgd... yes
PNG libraries found
checking if any authorisation type is given... no
checking if Linux x86_64... yes
checking for mysql_config... /usr/bin/mysql_config
checking for MySQL libraries... yes
checking for pg_config... /usr/bin/pg_config
checking for PostgreSQL libraries... yes
checking for large file support... done
checking for purify... no
checking for cygwin... no
checking if any threading type is given... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating emboss_acd/Makefile
config.status: creating data/Makefile
config.status: creating emboss_doc/Makefile
config.status: creating emboss_doc/html/Makefile
config.status: creating emboss_doc/text/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
touch debian/stamp-autotools
/usr/bin/make -C .
make[1]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
Making all in src
make[2]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/src'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c clique.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c disc.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c phylip.c
phylip.c: In function 'stringnames_new':
phylip.c:2457:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fclique clique.o disc.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fclique clique.o disc.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c consense.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c cons.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fconsense consense.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fconsense consense.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c contml.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c cont.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fcontml contml.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fcontml contml.o cont.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c contrast.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fcontrast contrast.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fcontrast contrast.o cont.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnacomp.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c seq.c
seq.c: In function 'collapsetree':
seq.c:3973:11: warning: variable 'j' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnadist.c
dnadist.c: In function 'emboss_getoptions':
dnadist.c:78:11: warning: variable 'ttr' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnainvar.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnaml.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnamlk.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c printree.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c mlclock.c
mlclock.c: In function 'maximize':
mlclock.c:348:11: warning: variable 'bracket' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnamove.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c moves.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnapars.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnapenny.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dolmove.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dollo.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dollop.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dolpenny.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c drawgram.c
drawgram.c: In function 'main':
drawgram.c:1043:11: warning: variable 'wasplotted' set but not used [-Wunused-but-set-variable]
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c draw.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c draw2.c
draw2.c: In function 'plot':
draw2.c:325:26: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
draw2.c:325:22: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
draw2.c:323:13: warning: variable 'cdy' set but not used [-Wunused-but-set-variable]
draw2.c: In function 'splyne':
draw2.c:965:8: warning: variable 'pictint' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c drawtree.c
drawtree.c: In function 'emboss_getoptions':
drawtree.c:270:10: warning: variable 'labeldirection' set but not used [-Wunused-but-set-variable]
drawtree.c: In function 'main':
drawtree.c:2617:11: warning: variable 'wasplotted' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c factor.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ffactor factor.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o ffactor factor.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c fitch.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dist.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ffitch fitch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o ffitch fitch.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c gendist.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fgendist gendist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fgendist gendist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c kitsch.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c mix.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c wagner.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c move.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c neighbor.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c pars.c
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c discrete.c
discrete.c: In function 'collapsetree':
discrete.c:2891:11: warning: variable 'j' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fpars pars.o discrete.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fpars pars.o discrete.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c penny.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c proml.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fproml proml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fproml proml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c promlk.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c protdist.c
protdist.c: In function 'protdist_inputdata':
protdist.c:732:22: warning: variable 'aasread' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fprotdist protdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fprotdist protdist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c protpars.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fprotpars protpars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fprotpars protpars.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c restdist.c
restdist.c: In function 'inputoptions':
restdist.c:168:11: warning: variable 'extranum' set but not used [-Wunused-but-set-variable]
restdist.c: In function 'restdist_inputdata':
restdist.c:200:20: warning: variable 'sitesread' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o frestdist restdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o frestdist restdist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c restml.c
restml.c: In function 'inputoptions':
restml.c:579:11: warning: variable 'extranum' set but not used [-Wunused-but-set-variable]
restml.c: In function 'restml_inputdata':
restml.c:622:20: warning: variable 'sitesread' set but not used [-Wunused-but-set-variable]
restml.c: In function 'evaluate':
restml.c:954:21: warning: variable 'y' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o frestml restml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o frestml restml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c retree.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fretree retree.o moves.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fretree retree.o moves.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c discboot.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c freqboot.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c restboot.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o frestboot restboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o frestboot restboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c seqboot.c
seqboot.c: In function 'writefactors':
seqboot.c:1087:10: warning: variable 'wfactor' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c seqbootall.c
seqbootall.c: In function 'writefactors':
seqbootall.c:1455:10: warning: variable 'wfactor' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c treedist.c
treedist.c: In function 'print_header':
treedist.c:723:8: warning: variable 'end_tree' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ftreedist treedist.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o ftreedist treedist.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c treedistpair.c
treedistpair.c: In function 'print_header':
treedistpair.c:725:8: warning: variable 'end_tree' set but not used [-Wunused-but-set-variable]
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm
libtool: link: gcc -g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,--as-needed -rdynamic -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm
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Making all in text
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/text'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/text'
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[2]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[2]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make[1]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
if test -e /usr/share/misc/config.guess ; then \
for i in ./config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i ; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ; \
fi ; \
done ; \
fi
DEB_MAKE_CHECK_TARGET unset, not running checks
/usr/bin/make -C . install DESTDIR=/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip/
make[1]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
Making install in src
make[2]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/src'
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/src'
test -z "/usr/bin" || /bin/mkdir -p "/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin"
/bin/bash ../libtool --mode=install /usr/bin/install -c fclique fconsense fcontml fcontrast fdnacomp fdnadist fdnainvar fdnaml fdnamlk fdnamove fdnapars fdnapenny fdolmove fdollop fdolpenny fdrawgram fdrawtree ffactor ffitch fgendist fkitsch fmix fmove fneighbor fpars fpenny fproml fpromlk fprotdist fprotpars frestdist frestml fretree fdiscboot ffreqboot frestboot fseqboot fseqbootall ftreedist ftreedistpair '/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin'
libtool: install: /usr/bin/install -c fclique /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fclique
libtool: install: /usr/bin/install -c fconsense /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fconsense
libtool: install: /usr/bin/install -c fcontml /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fcontml
libtool: install: /usr/bin/install -c fcontrast /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fcontrast
libtool: install: /usr/bin/install -c fdnacomp /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnacomp
libtool: install: /usr/bin/install -c fdnadist /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnadist
libtool: install: /usr/bin/install -c fdnainvar /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnainvar
libtool: install: /usr/bin/install -c fdnaml /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnaml
libtool: install: /usr/bin/install -c fdnamlk /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnamlk
libtool: install: /usr/bin/install -c fdnamove /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnamove
libtool: install: /usr/bin/install -c fdnapars /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnapars
libtool: install: /usr/bin/install -c fdnapenny /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnapenny
libtool: install: /usr/bin/install -c fdolmove /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdolmove
libtool: install: /usr/bin/install -c fdollop /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdollop
libtool: install: /usr/bin/install -c fdolpenny /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdolpenny
libtool: install: /usr/bin/install -c fdrawgram /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdrawgram
libtool: install: /usr/bin/install -c fdrawtree /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdrawtree
libtool: install: /usr/bin/install -c ffactor /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ffactor
libtool: install: /usr/bin/install -c ffitch /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ffitch
libtool: install: /usr/bin/install -c fgendist /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fgendist
libtool: install: /usr/bin/install -c fkitsch /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fkitsch
libtool: install: /usr/bin/install -c fmix /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fmix
libtool: install: /usr/bin/install -c fmove /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fmove
libtool: install: /usr/bin/install -c fneighbor /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fneighbor
libtool: install: /usr/bin/install -c fpars /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fpars
libtool: install: /usr/bin/install -c fpenny /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fpenny
libtool: install: /usr/bin/install -c fproml /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fproml
libtool: install: /usr/bin/install -c fpromlk /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fpromlk
libtool: install: /usr/bin/install -c fprotdist /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fprotdist
libtool: install: /usr/bin/install -c fprotpars /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fprotpars
libtool: install: /usr/bin/install -c frestdist /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/frestdist
libtool: install: /usr/bin/install -c frestml /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/frestml
libtool: install: /usr/bin/install -c fretree /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fretree
libtool: install: /usr/bin/install -c fdiscboot /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdiscboot
libtool: install: /usr/bin/install -c ffreqboot /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ffreqboot
libtool: install: /usr/bin/install -c frestboot /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/frestboot
libtool: install: /usr/bin/install -c fseqboot /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fseqboot
libtool: install: /usr/bin/install -c fseqbootall /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fseqbootall
libtool: install: /usr/bin/install -c ftreedist /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ftreedist
libtool: install: /usr/bin/install -c ftreedistpair /«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ftreedistpair
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/src'
make[2]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/src'
Making install in emboss_acd
make[2]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_acd'
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_acd'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/EMBOSS/acd" || /bin/mkdir -p "/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/acd"
/usr/bin/install -c -m 644 fclique.acd fconsense.acd fcontml.acd fcontrast.acd fdiscboot.acd fdnacomp.acd fdnadist.acd fdnainvar.acd fdnaml.acd fdnamlk.acd fdnamove.acd fdnapars.acd fdnapenny.acd fdollop.acd fdolmove.acd fdolpenny.acd fdrawgram.acd fdrawtree.acd ffactor.acd ffitch.acd ffreqboot.acd fgendist.acd fkitsch.acd fmix.acd fmove.acd fneighbor.acd fpars.acd fpenny.acd fproml.acd fpromlk.acd fprotdist.acd fprotpars.acd frestboot.acd frestdist.acd frestml.acd fretree.acd fseqboot.acd fseqbootall.acd ftreedist.acd ftreedistpair.acd '/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/acd'
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_acd'
make[2]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_acd'
Making install in data
make[2]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/data'
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/data'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/PHYLIPNEW/data/" || /bin/mkdir -p "/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/PHYLIPNEW/data/"
/usr/bin/install -c -m 644 font1 font2 font3 font4 font5 font6 '/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/PHYLIPNEW/data/'
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/data'
make[2]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/data'
Making install in emboss_doc
make[2]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
Making install in html
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/html'
make[4]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/html'
make[4]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/EMBOSS/doc/html/embassy/phylipnew" || /bin/mkdir -p "/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/html/embassy/phylipnew"
/usr/bin/install -c -m 644 index.html fclique.html fconsense.html fcontml.html fcontrast.html fdiscboot.html fdnacomp.html fdnadist.html fdnainvar.html fdnaml.html fdnamlk.html fdnamove.html fdnapars.html fdnapenny.html fdollop.html fdolmove.html fdolpenny.html fdrawgram.html fdrawtree.html ffactor.html ffitch.html ffreqboot.html fgendist.html fkitsch.html fmix.html fmove.html fneighbor.html fpars.html fpenny.html fproml.html fpromlk.html fprotdist.html fprotpars.html frestboot.html frestdist.html frestml.html fretree.html fseqboot.html fseqbootall.html ftreedist.html '/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/html/embassy/phylipnew'
/usr/bin/install -c -m 644 ftreedistpair.html '/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/html/embassy/phylipnew'
make[4]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/html'
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/html'
Making install in text
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/text'
make[4]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/text'
make[4]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/EMBOSS/doc/programs/text" || /bin/mkdir -p "/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/programs/text"
/usr/bin/install -c -m 644 fclique.txt fconsense.txt fcontml.txt fcontrast.txt fdiscboot.txt fdnacomp.txt fdnadist.txt fdnainvar.txt fdnaml.txt fdnamlk.txt fdnamove.txt fdnapars.txt fdnapenny.txt fdollop.txt fdolmove.txt fdolpenny.txt fdrawgram.txt fdrawtree.txt ffactor.txt ffitch.txt ffreqboot.txt fgendist.txt fkitsch.txt fmix.txt fmove.txt fneighbor.txt fpars.txt fpenny.txt fproml.txt fpromlk.txt fprotdist.txt fprotpars.txt frestboot.txt frestdist.txt frestml.txt fretree.txt fseqboot.txt fseqbootall.txt ftreedist.txt ftreedistpair.txt '/«BUILDDIR»/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/programs/text'
make[4]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/text'
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc/text'
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[4]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[2]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721/emboss_doc'
make[2]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make[3]: Entering directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make[2]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
make[1]: Leaving directory `/«BUILDDIR»/embassy-phylip-3.69+20100721'
touch debian/stamp-makefile-install
Adding cdbs dependencies to debian/embassy-phylip.substvars
dh_installdirs -pembassy-phylip
dh_installdocs -pembassy-phylip ./README ./AUTHORS
dh_installexamples -pembassy-phylip
dh_installman -pembassy-phylip
dh_installinfo -pembassy-phylip
dh_installmenu -pembassy-phylip
dh_installcron -pembassy-phylip
dh_installinit -pembassy-phylip
dh_installdebconf -pembassy-phylip
dh_installemacsen -pembassy-phylip
dh_installcatalogs -pembassy-phylip
dh_installpam -pembassy-phylip
dh_installlogrotate -pembassy-phylip
dh_installlogcheck -pembassy-phylip
dh_installgsettings -pembassy-phylip
dh_installchangelogs -pembassy-phylip ./ChangeLog
dh_installudev -pembassy-phylip
dh_lintian -pembassy-phylip
dh_bugfiles -pembassy-phylip
dh_install -pembassy-phylip
dh_link -pembassy-phylip
dh_installmime -pembassy-phylip
dh_strip -pembassy-phylip
dh_compress -pembassy-phylip
dh_fixperms -pembassy-phylip
dh_makeshlibs -pembassy-phylip
dh_installdeb -pembassy-phylip
dh_perl -pembassy-phylip
dh_shlibdeps -pembassy-phylip
dpkg-shlibdeps: warning: dependency on libensembl.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libepcre.so.7 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libeplplot.so.3 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libajaxdb.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libajaxg.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols).
dh_gencontrol -pembassy-phylip
dh_md5sums -pembassy-phylip
dh_builddeb -pembassy-phylip
dpkg-deb: building package `embassy-phylip' in `../embassy-phylip_3.69+20100721-3_amd64.deb'.
dpkg-genchanges >../embassy-phylip_3.69+20100721-3_amd64.changes
dpkg-genchanges: not including original source code in upload
dpkg-source --after-build embassy-phylip-3.69+20100721
dpkg-buildpackage: binary and diff upload (original source NOT included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110513-1122
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
embassy-phylip_3.69+20100721-3_amd64.changes:
?????????????????????????????????????????????
Format: 1.8
Date: Thu, 12 May 2011 14:19:59 +0900
Source: embassy-phylip
Binary: embassy-phylip
Architecture: source amd64
Version: 3.69+20100721-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
embassy-phylip - EMBOSS conversions of the programs in the phylip package
Changes:
embassy-phylip (3.69+20100721-3) unstable; urgency=low
.
* Set RPATH with ?-Wl,--rpath? as GCC 4.6 does not accept ?-R? anymore.
(debian/rules) LP: #770835.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Updated debian/embassy-phylip.lintian-overrides for lintian 2.5.
* debian/copyright validated with config-edit.
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64f9b15d65ec091d03732f15903c84901613f74b 13960 embassy-phylip_3.69+20100721-3.diff.gz
9ad3c23e5e1bbefcc567193440551156801d7922 2763986 embassy-phylip_3.69+20100721-3_amd64.deb
Checksums-Sha256:
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Files:
e18604ffe0028e068b3f5f66db3a42ea 1311 non-free/science optional embassy-phylip_3.69+20100721-3.dsc
83c0870cdb1a35b311f5116b32d04e5c 13960 non-free/science optional embassy-phylip_3.69+20100721-3.diff.gz
540261aa44cfb660215005c96af14f35 2763986 non-free/science optional embassy-phylip_3.69+20100721-3_amd64.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
embassy-phylip_3.69+20100721-3_amd64.deb
????????????????????????????????????????
new debian package, version 2.0.
size 2763986 bytes: control archive= 6518 bytes.
1296 bytes, 25 lines control
15422 bytes, 214 lines md5sums
Package: embassy-phylip
Version: 3.69+20100721-3
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 7240
Depends: emboss-lib (>= 6.3.1-6~), libc6 (>= 2.7), libx11-6, libxaw7, libxt6, emboss-lib (<< 6.3.2~)
Section: non-free/science
Priority: optional
Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#PHYLIPNEW
Description: EMBOSS conversions of the programs in the phylip package
This package is the adaptation of the PHYLIP package in which its
programs can operate with the biological sequence formats and databases
of the European Molecular Biology Open Software Suite (EMBOSS). The
software packages adapted for EMBOSS are called EMBASSY.
.
PHYLIP (the PHYLogeny Inference Package) is a package of programs for
inferring phylogenies (evolutionary trees). Methods that are available
in the package include parsimony, distance matrix, and likelihood
methods, including bootstrapping and consensus trees. Data types that
can be handled include molecular sequences, gene frequencies,
restriction sites and fragments, distance matrices, and discrete
characters.
.
The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them
from the original programs and avoid namespace conflict.
drwxr-xr-x root/root 0 2011-05-13 11:22 ./
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/bin/
-rwxr-xr-x root/root 121992 2011-05-13 11:22 ./usr/bin/fpars
-rwxr-xr-x root/root 81040 2011-05-13 11:22 ./usr/bin/fcontml
-rwxr-xr-x root/root 158920 2011-05-13 11:22 ./usr/bin/fdnaml
-rwxr-xr-x root/root 77032 2011-05-13 11:22 ./usr/bin/fconsense
-rwxr-xr-x root/root 85752 2011-05-13 11:22 ./usr/bin/fclique
-rwxr-xr-x root/root 134328 2011-05-13 11:22 ./usr/bin/fseqboot
-rwxr-xr-x root/root 168552 2011-05-13 11:22 ./usr/bin/fproml
-rwxr-xr-x root/root 134288 2011-05-13 11:22 ./usr/bin/frestboot
-rwxr-xr-x root/root 68720 2011-05-13 11:22 ./usr/bin/fneighbor
-rwxr-xr-x root/root 130280 2011-05-13 11:22 ./usr/bin/fdnacomp
-rwxr-xr-x root/root 166120 2011-05-13 11:22 ./usr/bin/fpromlk
-rwxr-xr-x root/root 134288 2011-05-13 11:22 ./usr/bin/fdiscboot
-rwxr-xr-x root/root 72832 2011-05-13 11:22 ./usr/bin/fkitsch
-rwxr-xr-x root/root 121976 2011-05-13 11:22 ./usr/bin/frestdist
-rwxr-xr-x root/root 159848 2011-05-13 11:22 ./usr/bin/fdrawgram
-rwxr-xr-x root/root 85608 2011-05-13 11:22 ./usr/bin/fdollop
-rwxr-xr-x root/root 60528 2011-05-13 11:22 ./usr/bin/ffactor
-rwxr-xr-x root/root 89240 2011-05-13 11:22 ./usr/bin/ftreedistpair
-rwxr-xr-x root/root 146592 2011-05-13 11:22 ./usr/bin/fdnamove
-rwxr-xr-x root/root 76936 2011-05-13 11:22 ./usr/bin/ffitch
-rwxr-xr-x root/root 138744 2011-05-13 11:22 ./usr/bin/fseqbootall
-rwxr-xr-x root/root 180328 2011-05-13 11:22 ./usr/bin/fdrawtree
-rwxr-xr-x root/root 85520 2011-05-13 11:22 ./usr/bin/fpenny
-rwxr-xr-x root/root 56416 2011-05-13 11:22 ./usr/bin/fgendist
-rwxr-xr-x root/root 72792 2011-05-13 11:22 ./usr/bin/fcontrast
-rwxr-xr-x root/root 89240 2011-05-13 11:22 ./usr/bin/ftreedist
-rwxr-xr-x root/root 89544 2011-05-13 11:22 ./usr/bin/fmix
-rwxr-xr-x root/root 93288 2011-05-13 11:22 ./usr/bin/fretree
-rwxr-xr-x root/root 134304 2011-05-13 11:22 ./usr/bin/fdnadist
-rwxr-xr-x root/root 123464 2011-05-13 11:22 ./usr/bin/fdnapenny
-rwxr-xr-x root/root 134296 2011-05-13 11:22 ./usr/bin/ffreqboot
-rwxr-xr-x root/root 101496 2011-05-13 11:22 ./usr/bin/fmove
-rwxr-xr-x root/root 81360 2011-05-13 11:22 ./usr/bin/fdolpenny
-rwxr-xr-x root/root 97408 2011-05-13 11:22 ./usr/bin/fdolmove
-rwxr-xr-x root/root 138424 2011-05-13 11:22 ./usr/bin/fprotpars
-rwxr-xr-x root/root 148512 2011-05-13 11:22 ./usr/bin/fdnamlk
-rwxr-xr-x root/root 150672 2011-05-13 11:22 ./usr/bin/frestml
-rwxr-xr-x root/root 122520 2011-05-13 11:22 ./usr/bin/fdnainvar
-rwxr-xr-x root/root 144024 2011-05-13 11:22 ./usr/bin/fprotdist
-rwxr-xr-x root/root 138440 2011-05-13 11:22 ./usr/bin/fdnapars
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/PHYLIPNEW/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/PHYLIPNEW/data/
-rw-r--r-- root/root 16886 2011-05-13 11:22 ./usr/share/PHYLIPNEW/data/font5
-rw-r--r-- root/root 14314 2011-05-13 11:22 ./usr/share/PHYLIPNEW/data/font6
-rw-r--r-- root/root 16985 2011-05-13 11:22 ./usr/share/PHYLIPNEW/data/font3
-rw-r--r-- root/root 11297 2011-05-13 11:22 ./usr/share/PHYLIPNEW/data/font4
-rw-r--r-- root/root 5934 2011-05-13 11:22 ./usr/share/PHYLIPNEW/data/font1
-rw-r--r-- root/root 11288 2011-05-13 11:22 ./usr/share/PHYLIPNEW/data/font2
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/man/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/man/man1/
-rw-r--r-- root/root 1675 2011-05-13 11:22 ./usr/share/man/man1/fdnaml.1e.gz
-rw-r--r-- root/root 1279 2011-05-13 11:22 ./usr/share/man/man1/fconsense.1e.gz
-rw-r--r-- root/root 1186 2011-05-13 11:22 ./usr/share/man/man1/ffactor.1e.gz
-rw-r--r-- root/root 1437 2011-05-13 11:22 ./usr/share/man/man1/fpenny.1e.gz
-rw-r--r-- root/root 1196 2011-05-13 11:22 ./usr/share/man/man1/fgendist.1e.gz
-rw-r--r-- root/root 1362 2011-05-13 11:22 ./usr/share/man/man1/fcontml.1e.gz
-rw-r--r-- root/root 1319 2011-05-13 11:22 ./usr/share/man/man1/fneighbor.1e.gz
-rw-r--r-- root/root 1643 2011-05-13 11:22 ./usr/share/man/man1/fdnamlk.1e.gz
-rw-r--r-- root/root 1382 2011-05-13 11:22 ./usr/share/man/man1/fdnapenny.1e.gz
-rw-r--r-- root/root 1378 2011-05-13 11:22 ./usr/share/man/man1/fseqboot.1e.gz
-rw-r--r-- root/root 1214 2011-05-13 11:22 ./usr/share/man/man1/ftreedist.1e.gz
-rw-r--r-- root/root 1500 2011-05-13 11:22 ./usr/share/man/man1/fdrawtree.1e.gz
-rw-r--r-- root/root 1240 2011-05-13 11:22 ./usr/share/man/man1/fdnainvar.1e.gz
-rw-r--r-- root/root 1410 2011-05-13 11:22 ./usr/share/man/man1/frestml.1e.gz
-rw-r--r-- root/root 1356 2011-05-13 11:22 ./usr/share/man/man1/fmove.1e.gz
-rw-r--r-- root/root 1341 2011-05-13 11:22 ./usr/share/man/man1/ffreqboot.1e.gz
-rw-r--r-- root/root 1462 2011-05-13 11:22 ./usr/share/man/man1/fdnapars.1e.gz
-rw-r--r-- root/root 1355 2011-05-13 11:22 ./usr/share/man/man1/fdolmove.1e.gz
-rw-r--r-- root/root 1392 2011-05-13 11:22 ./usr/share/man/man1/fkitsch.1e.gz
-rw-r--r-- root/root 1340 2011-05-13 11:22 ./usr/share/man/man1/fdnacomp.1e.gz
-rw-r--r-- root/root 1229 2011-05-13 11:22 ./usr/share/man/man1/ftreedistpair.1e.gz
-rw-r--r-- root/root 1216 2011-05-13 11:22 ./usr/share/man/man1/fretree.1e.gz
-rw-r--r-- root/root 1246 2011-05-13 11:22 ./usr/share/man/man1/fcontrast.1e.gz
-rw-r--r-- root/root 1287 2011-05-13 11:22 ./usr/share/man/man1/fclique.1e.gz
-rw-r--r-- root/root 1315 2011-05-13 11:22 ./usr/share/man/man1/fdnamove.1e.gz
-rw-r--r-- root/root 1424 2011-05-13 11:22 ./usr/share/man/man1/fprotdist.1e.gz
-rw-r--r-- root/root 1407 2011-05-13 11:22 ./usr/share/man/man1/frestboot.1e.gz
-rw-r--r-- root/root 1430 2011-05-13 11:22 ./usr/share/man/man1/fdiscboot.1e.gz
-rw-r--r-- root/root 1532 2011-05-13 11:22 ./usr/share/man/man1/fdrawgram.1e.gz
-rw-r--r-- root/root 1430 2011-05-13 11:22 ./usr/share/man/man1/ffitch.1e.gz
-rw-r--r-- root/root 1471 2011-05-13 11:22 ./usr/share/man/man1/fseqbootall.1e.gz
-rw-r--r-- root/root 1498 2011-05-13 11:22 ./usr/share/man/man1/fdnadist.1e.gz
-rw-r--r-- root/root 1321 2011-05-13 11:22 ./usr/share/man/man1/frestdist.1e.gz
-rw-r--r-- root/root 1617 2011-05-13 11:22 ./usr/share/man/man1/fpromlk.1e.gz
-rw-r--r-- root/root 1640 2011-05-13 11:22 ./usr/share/man/man1/fproml.1e.gz
-rw-r--r-- root/root 1415 2011-05-13 11:22 ./usr/share/man/man1/fdolpenny.1e.gz
-rw-r--r-- root/root 1414 2011-05-13 11:22 ./usr/share/man/man1/fdollop.1e.gz
-rw-r--r-- root/root 1462 2011-05-13 11:22 ./usr/share/man/man1/fpars.1e.gz
-rw-r--r-- root/root 1427 2011-05-13 11:22 ./usr/share/man/man1/fprotpars.1e.gz
-rw-r--r-- root/root 1428 2011-05-13 11:22 ./usr/share/man/man1/fmix.1e.gz
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/acd/
-rw-r--r-- root/root 2789 2011-05-13 11:22 ./usr/share/EMBOSS/acd/frestdist.acd
-rw-r--r-- root/root 2394 2011-05-13 11:22 ./usr/share/EMBOSS/acd/ftreedistpair.acd
-rw-r--r-- root/root 4554 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fprotpars.acd
-rw-r--r-- root/root 3426 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fneighbor.acd
-rw-r--r-- root/root 1876 2011-05-13 11:22 ./usr/share/EMBOSS/acd/ffactor.acd
-rw-r--r-- root/root 4549 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fmix.acd
-rw-r--r-- root/root 2675 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnamove.acd
-rw-r--r-- root/root 7995 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnamlk.acd
-rw-r--r-- root/root 3377 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fmove.acd
-rw-r--r-- root/root 7286 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdrawtree.acd
-rw-r--r-- root/root 1641 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fgendist.acd
-rw-r--r-- root/root 4380 2011-05-13 11:22 ./usr/share/EMBOSS/acd/ffitch.acd
-rw-r--r-- root/root 4039 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdolpenny.acd
-rw-r--r-- root/root 3397 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fclique.acd
-rw-r--r-- root/root 5326 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdiscboot.acd
-rw-r--r-- root/root 3576 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fcontml.acd
-rw-r--r-- root/root 4950 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fpars.acd
-rw-r--r-- root/root 2780 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fconsense.acd
-rw-r--r-- root/root 4078 2011-05-13 11:22 ./usr/share/EMBOSS/acd/frestboot.acd
-rw-r--r-- root/root 2100 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fretree.acd
-rw-r--r-- root/root 3652 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fkitsch.acd
-rw-r--r-- root/root 4941 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnapars.acd
-rw-r--r-- root/root 3649 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnapenny.acd
-rw-r--r-- root/root 8119 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fproml.acd
-rw-r--r-- root/root 6199 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fseqbootall.acd
-rw-r--r-- root/root 7851 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdrawgram.acd
-rw-r--r-- root/root 4460 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fpenny.acd
-rw-r--r-- root/root 4906 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnadist.acd
-rw-r--r-- root/root 3455 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnacomp.acd
-rw-r--r-- root/root 7840 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fpromlk.acd
-rw-r--r-- root/root 2181 2011-05-13 11:22 ./usr/share/EMBOSS/acd/ftreedist.acd
-rw-r--r-- root/root 4323 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fseqboot.acd
-rw-r--r-- root/root 1958 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnainvar.acd
-rw-r--r-- root/root 4056 2011-05-13 11:22 ./usr/share/EMBOSS/acd/frestml.acd
-rw-r--r-- root/root 3496 2011-05-13 11:22 ./usr/share/EMBOSS/acd/ffreqboot.acd
-rw-r--r-- root/root 4035 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdollop.acd
-rw-r--r-- root/root 3262 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdolmove.acd
-rw-r--r-- root/root 5467 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fprotdist.acd
-rw-r--r-- root/root 2237 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fcontrast.acd
-rw-r--r-- root/root 8485 2011-05-13 11:22 ./usr/share/EMBOSS/acd/fdnaml.acd
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/doc/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/
-rw-r--r-- root/root 18205 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fcontrast.txt
-rw-r--r-- root/root 23343 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/ffreqboot.txt
-rw-r--r-- root/root 19602 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fmix.txt
-rw-r--r-- root/root 13252 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/frestml.txt
-rw-r--r-- root/root 17312 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/ftreedistpair.txt
-rw-r--r-- root/root 35829 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnaml.txt
-rw-r--r-- root/root 28047 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fproml.txt
-rw-r--r-- root/root 20433 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdiscboot.txt
-rw-r--r-- root/root 27165 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fpenny.txt
-rw-r--r-- root/root 23489 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fprotdist.txt
-rw-r--r-- root/root 9698 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fmove.txt
-rw-r--r-- root/root 12785 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/ffitch.txt
-rw-r--r-- root/root 13631 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/ffactor.txt
-rw-r--r-- root/root 30122 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fprotpars.txt
-rw-r--r-- root/root 18298 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnapars.txt
-rw-r--r-- root/root 23379 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fseqboot.txt
-rw-r--r-- root/root 18921 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fgendist.txt
-rw-r--r-- root/root 11170 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnamove.txt
-rw-r--r-- root/root 12106 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fretree.txt
-rw-r--r-- root/root 27906 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdolpenny.txt
-rw-r--r-- root/root 18571 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fpars.txt
-rw-r--r-- root/root 11461 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdrawgram.txt
-rw-r--r-- root/root 16581 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/ftreedist.txt
-rw-r--r-- root/root 18441 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fkitsch.txt
-rw-r--r-- root/root 9773 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fclique.txt
-rw-r--r-- root/root 19022 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdollop.txt
-rw-r--r-- root/root 13286 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fneighbor.txt
-rw-r--r-- root/root 24757 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fcontml.txt
-rw-r--r-- root/root 14021 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fconsense.txt
-rw-r--r-- root/root 25389 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnapenny.txt
-rw-r--r-- root/root 17702 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/frestdist.txt
-rw-r--r-- root/root 23959 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fseqbootall.txt
-rw-r--r-- root/root 19396 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnainvar.txt
-rw-r--r-- root/root 10595 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdrawtree.txt
-rw-r--r-- root/root 24011 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnadist.txt
-rw-r--r-- root/root 23343 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/frestboot.txt
-rw-r--r-- root/root 17364 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnacomp.txt
-rw-r--r-- root/root 13736 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdolmove.txt
-rw-r--r-- root/root 27111 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fpromlk.txt
-rw-r--r-- root/root 31295 2011-05-13 11:22 ./usr/share/EMBOSS/doc/programs/text/fdnamlk.txt
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/
-rw-r--r-- root/root 29996 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnainvar.html
-rw-r--r-- root/root 50465 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnaml.html
-rw-r--r-- root/root 34370 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fseqboot.html
-rw-r--r-- root/root 22987 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdrawtree.html
-rw-r--r-- root/root 21839 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ffactor.html
-rw-r--r-- root/root 41568 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fpromlk.html
-rw-r--r-- root/root 18220 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fmove.html
-rw-r--r-- root/root 5757 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/index.html
-rw-r--r-- root/root 29745 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fmix.html
-rw-r--r-- root/root 23373 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestml.html
-rw-r--r-- root/root 20011 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fretree.html
-rw-r--r-- root/root 35315 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ffreqboot.html
-rw-r--r-- root/root 21902 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fneighbor.html
-rw-r--r-- root/root 36900 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdolpenny.html
-rw-r--r-- root/root 42671 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fproml.html
-rw-r--r-- root/root 28110 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdollop.html
-rw-r--r-- root/root 36393 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnadist.html
-rw-r--r-- root/root 24540 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdrawgram.html
-rw-r--r-- root/root 22115 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ffitch.html
-rw-r--r-- root/root 24738 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ftreedist.html
-rw-r--r-- root/root 22394 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamove.html
-rw-r--r-- root/root 28431 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fpars.html
-rw-r--r-- root/root 21854 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fconsense.html
-rw-r--r-- root/root 35331 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fseqbootall.html
-rw-r--r-- root/root 27131 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fkitsch.html
-rw-r--r-- root/root 25242 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ftreedistpair.html
-rw-r--r-- root/root 29813 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnacomp.html
-rw-r--r-- root/root 37471 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnapenny.html
-rw-r--r-- root/root 36389 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fprotdist.html
-rw-r--r-- root/root 45239 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fprotpars.html
-rw-r--r-- root/root 35315 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestboot.html
-rw-r--r-- root/root 36506 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fpenny.html
-rw-r--r-- root/root 22858 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdolmove.html
-rw-r--r-- root/root 18281 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fclique.html
-rw-r--r-- root/root 29854 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdiscboot.html
-rw-r--r-- root/root 31111 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnapars.html
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-rw-r--r-- root/root 45603 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamlk.html
-rw-r--r-- root/root 26553 2011-05-13 11:22 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestdist.html
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drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/doc/embassy-phylip/
-rw-r--r-- root/root 1861 2009-09-16 01:58 ./usr/share/doc/embassy-phylip/ChangeLog
-rw-r--r-- root/root 872 2009-09-16 01:58 ./usr/share/doc/embassy-phylip/changelog.gz
-rw-r--r-- root/root 671 2009-09-16 01:58 ./usr/share/doc/embassy-phylip/AUTHORS
-rw-r--r-- root/root 2298 2011-05-13 11:21 ./usr/share/doc/embassy-phylip/copyright
-rw-r--r-- root/root 3793 2009-09-16 01:58 ./usr/share/doc/embassy-phylip/README
-rw-r--r-- root/root 849 2011-05-13 11:21 ./usr/share/doc/embassy-phylip/changelog.Debian.gz
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/lintian/
drwxr-xr-x root/root 0 2011-05-13 11:22 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 180 2011-05-13 11:21 ./usr/share/lintian/overrides/embassy-phylip
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? Post Build ?
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? Cleanup ?
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Purging /«CHROOT»/«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
autotools-dev* bsdmainutils* cdbs* comerr-dev* debhelper* emboss-lib* file*
fontconfig-config* gettext* gettext-base* groff-base* html2text*
intltool-debian* krb5-multidev* libcroco3* libexpat1* libexpat1-dev*
libfontconfig1* libfontconfig1-dev* libfreetype6* libfreetype6-dev*
libgcrypt11* libgd2-xpm* libgd2-xpm-dev* libglib2.0-0* libgnutls26*
libgpg-error0* libgssapi-krb5-2* libgssrpc4* libhpdf-2.1.0* libice-dev*
libice6* libjpeg62* libjpeg62-dev* libk5crypto3* libkadm5clnt-mit8*
libkadm5srv-mit8* libkdb5-5* libkeyutils1* libkrb5-3* libkrb5-dev*
libkrb5support0* libldap-2.4-2* libmagic1* libmysqlclient-dev*
libmysqlclient16* libpcre3* libpipeline1* libpng12-0* libpng12-dev*
libpopt0* libpq-dev* libpq5* libpthread-stubs0* libpthread-stubs0-dev*
libsasl2-2* libsm-dev* libsm6* libssl-dev* libssl1.0.0* libtasn1-3*
libunistring0* libx11-6* libx11-data* libx11-dev* libxau-dev* libxau6*
libxaw7* libxaw7-dev* libxcb1* libxcb1-dev* libxdmcp-dev* libxdmcp6*
libxext-dev* libxext6* libxml2* libxmu-dev* libxmu-headers* libxmu6*
libxpm-dev* libxpm4* libxt-dev* libxt6* man-db* mysql-common* pkg-config*
po-debconf* sbuild-build-depends-core-dummy*
sbuild-build-depends-embassy-phylip-dummy* ttf-dejavu-core* ucf* x11-common*
x11proto-core-dev* x11proto-input-dev* x11proto-kb-dev* x11proto-xext-dev*
xorg-sgml-doctools* xtrans-dev* zlib1g-dev*
0 upgraded, 0 newly installed, 99 to remove and 0 not upgraded.
After this operation, 119 MB disk space will be freed.
(Reading database ... 15920 files and directories currently installed.)
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All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
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? Summary ?
????????????????????????????????????????????????????????????????????????????????
Architecture: amd64
Build-Space: 37984
Build-Time: 53
Distribution: unstable
Install-Time: 99
Job: embassy-phylip_3.69+20100721-3.dsc
Package: embassy-phylip
Package-Time: 156
Source-Version: 3.69+20100721-3
Space: 37984
Status: successful
Version: 3.69+20100721-3
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Finished at 20110513-1122
Build needed 00:02:36, 37984k disc space
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