[Debian-med-packaging] qiime_1.3.0-2_amd64.changes is NEW

[Debian FTP Masters]

(new) qiime-doc_1.3.0-2_all.deb extra doc
Quantitative Insights Into Microbial Ecology (tutorial)
 QIIME (canonically pronounced ‘Chime’) is a pipeline for performing
 microbial community analysis that integrates many third party tools which
 have become standard in the field. A standard QIIME analysis begins with
 sequence data from one or more sequencing platforms, including
  * Sanger,
  * Roche/454, and
  * Illumina GAIIx.
 With all the underlying tools installed,
 of which not all are yet available in Debian (or any other Linux
 distribution), QIIME can perform
  * library de-multiplexing and quality filtering;
  * denoising with PyroNoise;
  * OTU and representative set picking with uclust, cdhit, mothur, BLAST,
    or other tools;
  * taxonomy assignment with BLAST or the RDP classifier;
  * sequence alignment with PyNAST, muscle, infernal, or other tools;
  * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools;
  * alpha diversity and rarefaction, including visualization of results,
    using over 20 metrics including Phylogenetic Diversity, chao1, and
    observed species;
  * beta diversity and rarefaction, including visualization of results,
    using over 25 metrics including weighted and unweighted UniFrac,
    Euclidean distance, and Bray-Curtis;
  * summarization and visualization of taxonomic composition of samples
    using pie charts and histograms
 and many other features.
 .
 QIIME includes parallelization capabilities for many of the
 computationally intensive steps. By default, these are configured to
 utilize a mutli-core environment, and are easily configured to run in
 a cluster environment. QIIME is built in Python using the open-source
 PyCogent toolkit. It makes extensive use of unit tests, and is highly
 modular to facilitate custom analyses.
 .
 This package contains the documentation and a tutorial.
(new) qiime_1.3.0-2.debian.tar.gz extra science
(new) qiime_1.3.0-2.dsc extra science
(new) qiime_1.3.0-2_amd64.deb extra science
WARNING: Already present in contrib distribution.
Quantitative Insights Into Microbial Ecology
 QIIME (canonically pronounced ‘Chime’) is a pipeline for performing
 microbial community analysis that integrates many third party tools which
 have become standard in the field. A standard QIIME analysis begins with
 sequence data from one or more sequencing platforms, including
  * Sanger,
  * Roche/454, and
  * Illumina GAIIx.
 With all the underlying tools installed,
 of which not all are yet available in Debian (or any other Linux
 distribution), QIIME can perform
  * library de-multiplexing and quality filtering;
  * denoising with PyroNoise;
  * OTU and representative set picking with uclust, cdhit, mothur, BLAST,
    or other tools;
  * taxonomy assignment with BLAST or the RDP classifier;
  * sequence alignment with PyNAST, muscle, infernal, or other tools;
  * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools;
  * alpha diversity and rarefaction, including visualization of results,
    using over 20 metrics including Phylogenetic Diversity, chao1, and
    observed species;
  * beta diversity and rarefaction, including visualization of results,
    using over 25 metrics including weighted and unweighted UniFrac,
    Euclidean distance, and Bray-Curtis;
  * summarization and visualization of taxonomic composition of samples
    using pie charts and histograms
 and many other features.
 .
 QIIME includes parallelization capabilities for many of the
 computationally intensive steps. By default, these are configured to
 utilize a mutli-core environment, and are easily configured to run in
 a cluster environment. QIIME is built in Python using the open-source
 PyCogent toolkit. It makes extensive use of unit tests, and is highly
 modular to facilitate custom analyses.
Changes: qiime (1.3.0-2) unstable; urgency=low
 .
  * debian/control:
    - Added myself to uploaders
    - moved from contrib/science to science because there are
      no non-free components used any more
    - Removed duplicated entry ${misc:Depends}
    - Extra package qiime-doc arch all to avoid
    - Provides/Replaces/Conflicts denoiser
    - Fix Vcs fields
    - DM-Upload-Allowed: yes
    - Build-Depends:
       + python-all-dev (>= 2.6) (instead of python-central)
       + python-sphinx to create python documentation
  * debian/rules:
    - short dh notation instead of cdbs
      Closes: #639389
    - allow overriding python2 by environemnt which helps backporters
      like Tim for BioLinux
    - use calculated $(pkg) variable instead of fixed string 'qiime'
  * debian/{rules,qiime.install}: Adapted to new binary package layout
  * debian/qiime.{doc,links}: Move documentation into place and use
    packaged JavaScript libraries
  * debian/qiime-doc.doc-base
  * debian/upstream-metadata.yaml


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Announcing to debian-devel-changes at lists.debian.org
Closing bugs: 639389 


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