[Debian-med-packaging] python-pynast_1.1-3_amd64.changes is NEW

Debian FTP Masters ftpmaster at ftp-master.debian.org
Tue Nov 29 13:18:06 UTC 2011


(new) pynast_1.1-3_all.deb extra python
alignment of short DNA sequences
 The package provices a reimplementation of the Nearest Alignment
 Space Termination tool in Python. It was prepared for next generation
 sequencers.
 .
 Given a set of sequences and a template alignment, PyNAST will align the
 input sequences against the template alignment, and return a multiple
 sequence alignment which contains the same number of positions (or
 columns) as the template alignment. This facilitates the analysis of new
 sequences in the context of existing alignments, and additional data
 derived from existing alignments such as phylogenetic trees. Because
 any protein or nucleic acid sequences and template alignments can be
 provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
(new) python-pynast_1.1-3.debian.tar.gz extra python
WARNING: Already present in contrib distribution.
(new) python-pynast_1.1-3.dsc extra python
WARNING: Already present in contrib distribution.
Changes: python-pynast (1.1-3) unstable; urgency=low
 .
  [ Steffen Moeller ]
  * Rendering Tim's fixes available for Debian
  * Moving pynast from contrib to main. The dependency cogent
    got its non-freeness resolved.
  * Changing name from python-pynast to pynast.
 .
  [ Andreas Tille ]
  * debian/control:
    - Added myself and Tim Booth <tbooth at ceh.ac.uk> to Uploaders
    - Fixed Vcs fields
    - Removed duplicated ${misc:Depends}
    - Removed unneeded ${shlibs:Depends}
    - Depends: libjs-jquery, libjs-underscore
    - Moved citation information from long description to
      upstream-metadata.yaml
    - Moved information about previous versions from long description
      to README.Debian
    - Provides/Replaces/Conflicts: python-pynast to enable smooth
      upgrades after renaming the package
  * debian/copyright: DEP5
  * Dephelper 8 (control+compat)
  * debian/links: Link packages JavaScript libraries
  * debian/rules: remove incomplete links to JavaScript libraries
  * debian/doc-base: created docbase file
  * debian/pynast.1: escape hyphen character
  * debian/upstream-metadata.yaml: Citation information
  * debian/README.Debian: Replaced outdated and useless content by
    some information about previous upstream versions (previosely
    mentioned in long description)


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