[Debian-med-packaging] Bug#640302: Bug#640302: Bug#640302: seqan - New upstream version

[Charles Plessy]

Le Sun, Sep 04, 2011 at 11:04:00PM +0900, Charles Plessy a écrit :
> Le Sun, Sep 04, 2011 at 10:26:38AM +0200, Bastian Blank a écrit :
> > Source: seqan
> > Version: 1.2-1
> > Severity: wishlist
> > 
> > Version 1.3 of seqan is available. Please update.
> 
> Hello everybody,
> 
> I tried to build version 1.3 and it fails:
> 
> g++ -I.. -O9 -fopenmp -march=native -DSEQAN_ENABLE_DEBUG=0 -pedantic -W -Wall -Wno-variadic-macros -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_ENABLE_TESTING=0 -static   -lrt  seqcons/seqcons.cpp   -o seqcons/seqcons
> make: *** No rule to make target `razers/paramChooser', needed by `all'.  Stop.
> 
> I do not understand how one is supposed to build this target.

It looks like if I remove razers/paramChooser from the list of targets, razers
is built anyway.  Currently, sequan-apps contains the following programs:

/usr/bin/dfi
/usr/bin/pair_align
/usr/bin/micro_razers
/usr/bin/seqan_tcoffee
/usr/bin/seqcons
/usr/bin/razers
/usr/bin/tree_recon

Is there a sequan user (Soeren ? Bastian ?) who could tell us if distributing
seqan 1.3 witout building razers/paramChooser would be acceptable for the moment ?

The current upstream Subversion trunk has switched to cmake in the meantime…

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan