[Debian-med-packaging] Bug#640302: seqan - New upstream version

[Charles Plessy]

Package: seqan-apps
Version: 1.2-1
Subject: Rename programs with a too common name.
Severity: important
X-Debbugs-CC: Bastian Blank <waldi at debian.org>

Le Mon, Sep 05, 2011 at 09:20:59AM +0200, Bastian Blank a écrit :
> On Mon, Sep 05, 2011 at 09:41:48AM +0900, Charles Plessy wrote:
> >                   Currently, sequan-apps contains the following programs:
> > /usr/bin/dfi
> > /usr/bin/pair_align
> > /usr/bin/micro_razers
> > /usr/bin/seqan_tcoffee
> > /usr/bin/seqcons
> > /usr/bin/razers
> > /usr/bin/tree_recon
> 
> This names looks way to common. Please prefix them with seqan.

Version 1.3 contains more programs:

dfi
insegt
mason
micro_razers
pair_align
param_chooser
rabema
razers
razers2
read_analyzer
rep_sep
sak
seqan_tcoffee
seqcons
snp_store
splazers
stellar
tree_recon

Not being the maintainer nor a user of SeqAn applications, I do not feel like
renaming programs.  But the lead uploader looks MIA…

For the moment, I will defer any decision and propose to distribute the new
programs in /usr/lib/sequan/bin in the next package update that I am preparing.

Feedback from users of SeqAn applications would be greatly appreciated.

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan