[Debian-med-packaging] Fwd: RE: CIFPARSE-OBJ lacks scripts for building docs

Laszlo Kajan lkajan at rostlab.org
Thu Aug 9 15:35:54 UTC 2012




-------- Original Message --------
Subject: RE: [Debian-med-packaging] CIFPARSE-OBJ lacks scripts for building docs
Date: Thu, 9 Aug 2012 10:42:42 -0400
From: Vladimir Guranovic <vladimir at rcsb.rutgers.edu>
To: 'Laszlo Kajan' <lkajan at rostlab.org>

Please ignore ".cproject" information. It should not be in the release and
those versions are bogus.

Whatever is in Core Wrapper has appropriate versions of modules for it.

> -----Original Message-----
> From: Laszlo Kajan [mailto:lkajan at rostlab.org] 
> Sent: Thursday, August 09, 2012 10:38 AM
> To: Vladimir Guranovic
> Subject: Re: [Debian-med-packaging] CIFPARSE-OBJ lacks 
> scripts for building docs
> 
> Yes, and I see that the necessary script and template are in 
> fact distributed with core wrapper, so I am able to build the docs.
> 
> But I wonder how to handle this:
> 
> * In the CIFPARSE-OBJ, there seem to be newer versions of 
> components, e.g.:
> 
>                 CIFPARSE-OBJ    Core Wrapper
>  cifparse-obj   7.1.0           7.0
>  cif-file       1.1.0           1.0
>  common         4.5.14          4.5
>  tables         8.1.0           8.0
>  regex          2.3.1           2.2
> 
>  I got these versions from the */.cproject files.
> 
> So how do you do releases of these components? Would Core 
> Wrapper work with the newer versions?
> 
> Perhaps I should create a CIFPARSE-OBJ shared library with 
> these newer components, and link Core Wrapper with that? - I 
> mean: what is the reason
> for Core Wrapper not being built with the newest version of 
> CIFPARSE-OBJ?
> 
> To tell you the truth, what I expected, before looking into 
> the archives, was that I would have to build CIFPARSE-OBJ 
> first, and Core Wrapper
> would have to be linked with it.
> 
> Best regards,
> 
> Laszlo
> 
> On 09/08/12 15:40, Vladimir Guranovic wrote:
> > Forgot to mention. In the meantime, you can use our online 
> documentation
> > (only for C++)
> > 
> >> -----Original Message-----
> >> From: Vladimir Guranovic [mailto:vladimir at rcsb.rutgers.edu] 
> >> Sent: Thursday, August 09, 2012 7:00 AM
> >> To: 'Laszlo Kajan'
> >> Cc: 'Debian Med Packaging Team'; sw-help at rcsb.rutgers.edu
> >> Subject: RE: [Debian-med-packaging] CIFPARSE-OBJ lacks 
> >> scripts for building docs
> >>
> >> Hello Laszlo,
> >>
> >> Thanks for your message. The next release of CIFPARSE-OBJ 
> >> will fix this
> >> problem. We expect the next release to be in a couple of weeks.
> >>
> >> Thanks,
> >>
> >> Vladimir
> >>
> >>> -----Original Message-----
> >>> From: Laszlo Kajan [mailto:lkajan at rostlab.org] 
> >>> Sent: Wednesday, August 08, 2012 10:29 AM
> >>> Cc: Debian Med Packaging Team; sw-help at rcsb.rutgers.edu
> >>> Subject: [Debian-med-packaging] CIFPARSE-OBJ lacks scripts 
> >>> for building docs
> >>>
> >>> Dear CIFPARSE-OBJ team!
> >>>
> >>> Thank you for providing the CIFPARSE-OBJ library for 
> mmCIF parsing.
> >>>
> >>> I am building the library from source now, and have noticed that
> >>>
> >>>  make doc
> >>>
> >>> fails because
> >>>
> >>>  etc/createdoc.sh
> >>>
> >>> (called by util/doc.sh) is not in the archive (I have 
> >>> downloaded cifparse-obj-v7.100-prod-src.tar.gz from [1]).
> >>>
> >>> * Could you please release a version where building the 
> >>> documentation is also included in the archive?
> >>>
> >>> Thank you very much in advance.
> >>>
> >>> Best regards,
> >>>
> >>> Laszlo Kajan
> >>> Debian Maintainer
> >>> Rost Lab
> >>>
> >>> [1] 
> >>> http://sw-tools.rcsb.org/apps/CIFPARSE-OBJ/source/cifparse-obj
> >>> -v7.100-prod-src.tar.gz
> >>>
> >>> _______________________________________________
> >>> Debian-med-packaging mailing list
> >>> Debian-med-packaging at lists.alioth.debian.org
> >>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian
> >>> -med-packaging
> >>>
> >>
> >>
> > 
> 






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