[Debian-med-packaging] Bug#694906: Bug#694906: Bug#694906: emboss: The 'wossname' command hangs. This completely blocks emboss-explorer.

[Charles Plessy]

Le Sun, Dec 09, 2012 at 04:16:11PM +0100, Thorsten Alteholz a écrit :
> 
> Squeeze (6.1.0-5) works great:
> ~$ wossname -search preg
> Finds programs by keywords in their short description
> SEARCH FOR 'PREG'
> preg   Regular expression search of protein sequence(s)
> 
> Wheezy (6.4.0-2) works great:
> ~$ wossname -search preg
> Finds programs by keywords in their short description
> SEARCH FOR 'PREG'
> preg   Regular expression search of protein sequence(s)
> 
> Sid (6.4.0-4) works great:
> ~$ wossname -search preg
> Finds programs by keywords in their short description
> SEARCH FOR 'PREG'
> preg   Regular expression search of protein sequence(s)

Thanks !

Strangely, on my computer, it fails.

wossname -search preg 2>&1 | head
Finds programs by keywords in their short description
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Pure DNA sequence'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Vienna RNA structure constraints'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Vienna RNA parameters'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Generic float'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Generic boolean'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Generic boolean'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Generic boolean'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Generic boolean'
Error: /usr/share/EMBOSS/acd/vrnasubopt.acd: bad ACD relation 'EDAM: Generic boolean'

This was tested on amd64.  Which architecture are you running ?

Cheers,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan