[Debian-med-packaging] Bug#682042: emboss-data: ships bulky taxonomy and gene ontology data
Aaron M. Ucko
ucko at debian.org
Thu Jul 19 03:42:12 UTC 2012
Package: emboss-data
Version: 6.4.0-2
Severity: normal
emboss-data recently grew from a slim 5 megabytes to a massive 305.
Closer inspection reveals the primary culprits to be large taxonomy
and gene ontology databases:
63927095 ./usr/share/EMBOSS/data/TAXONOMY/names.dmp
58897689 ./usr/share/EMBOSS/index/taxon.xtax
53221137 ./usr/share/EMBOSS/data/TAXONOMY/nodes.dmp
28885180 ./usr/share/EMBOSS/index/taxon.xid
23876286 ./usr/share/EMBOSS/index/taxon.xup
20110641 ./usr/share/EMBOSS/data/OBO/gene_ontology.1_2.obo
13816644 ./usr/share/EMBOSS/index/go.xde
8964472 ./usr/share/EMBOSS/index/taxon.xrnk
8963308 ./usr/share/EMBOSS/index/taxon.xgc
6047464 ./usr/share/EMBOSS/index/go.xnm
5642511 ./usr/share/EMBOSS/index/taxon.xmgc
2504535 ./usr/share/EMBOSS/index/go.xac
2220728 ./usr/share/EMBOSS/index/go.xis
1292180 ./usr/share/EMBOSS/index/go.xid
[...]
437512 ./usr/share/EMBOSS/index/go.xns
Could you please consider splitting them out into a separate package
or two, which emboss-data would then merely recommend (or perhaps
suggest, if few users actually need them)?
Thanks!
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