[Debian-med-packaging] Possible problems in your Debian packages
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Sat Jun 30 20:55:01 UTC 2012
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=== arb:
= Missing build(s) on mipsel powerpc sparc
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=arb
= Not in testing for 125 days.
See <http://release.debian.org/migration/testing.pl?package=arb>
=== beast-mcmc:
= Missing build(s) on armel armhf ia64 powerpc s390x
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=beast-mcmc
= Not in testing for 22 days.
See <http://release.debian.org/migration/testing.pl?package=beast-mcmc>
=== freemedforms-project:
= 1 Release Critical bug(s):
- #678152 <http://bugs.debian.org/678152>
crashes at start
= No migration to testing for 25 days.
See <http://release.debian.org/migration/testing.pl?package=freemedforms-project>
=== libhmsbeagle:
= Missing build(s) on kfreebsd-amd64 kfreebsd-i386
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=libhmsbeagle
=== libsbml:
= 1 Release Critical bug(s):
- #659808 <http://bugs.debian.org/659808>
libsbml5-octave: uninstallable on ia64
= Missing build(s) on s390 s390x
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=libsbml
= Not in testing for 168 days.
See <http://release.debian.org/migration/testing.pl?package=libsbml>
=== mafft:
= Missing build(s) on ia64
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=mafft
=== melting:
= Missing build(s) on powerpc
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=melting
= No migration to testing for 87 days.
See <http://release.debian.org/migration/testing.pl?package=melting>
=== mgltools-sff:
= Missing build(s) on armel armhf i386 ia64 kfreebsd-amd64 kfreebsd-i386 mips powerpc s390 s390x sparc
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=mgltools-sff
= No migration to testing for 28 days.
See <http://release.debian.org/migration/testing.pl?package=mgltools-sff>
=== primer3:
= Missing build(s) on mips
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=primer3
= No migration to testing for 98 days.
See <http://release.debian.org/migration/testing.pl?package=primer3>
=== qiime:
= No migration to testing for 39 days.
See <http://release.debian.org/migration/testing.pl?package=qiime>
=== qtl:
= Missing build(s) on armel armhf
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=qtl
= No migration to testing for 98 days.
See <http://release.debian.org/migration/testing.pl?package=qtl>
=== r-bioc-hilbertvis:
= Missing build(s) on armel armhf
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=r-bioc-hilbertvis
= No migration to testing for 98 days.
See <http://release.debian.org/migration/testing.pl?package=r-bioc-hilbertvis>
=== r-bioc-limma:
= Missing build(s) on armel armhf
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=r-bioc-limma
= No migration to testing for 79 days.
See <http://release.debian.org/migration/testing.pl?package=r-bioc-limma>
=== r-cran-epi:
= Missing build(s) on armel armhf
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=r-cran-epi
= No migration to testing for 96 days.
See <http://release.debian.org/migration/testing.pl?package=r-cran-epi>
=== r-cran-surveillance:
= Missing build(s) on i386
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=r-cran-surveillance
= No migration to testing for 30 days.
See <http://release.debian.org/migration/testing.pl?package=r-cran-surveillance>
=== r-cran-vegan:
= Missing build(s) on armel armhf
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=r-cran-vegan
= Not in testing for 130 days.
See <http://release.debian.org/migration/testing.pl?package=r-cran-vegan>
=== sbmltoolbox:
= Not in testing for 40 days.
See <http://release.debian.org/migration/testing.pl?package=sbmltoolbox>
=== seaview:
= Missing build(s) on armhf ia64 kfreebsd-amd64 kfreebsd-i386 mips s390x sparc
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=seaview
=== sitplus:
= Not in testing for 11 days.
See <http://release.debian.org/migration/testing.pl?package=sitplus>
=== tophat:
= Not in testing for 140 days.
See <http://release.debian.org/migration/testing.pl?package=tophat>
=== wrapitk-python:
= 2 Release Critical bug(s):
- #659417 <http://bugs.debian.org/659417>
wrapitk-python: FTBFS on ia64 ("file INSTALL cannot copy file")
- #667417 <http://bugs.debian.org/667417>
wrapitk-python: ftbfs with recent gccxml
= Missing build(s) on armel armhf ia64 mips mipsel s390 s390x
This might need manual action from your side.
See https://buildd.debian.org/status/package.php?p=wrapitk-python
= Not in testing for 167 days.
See <http://release.debian.org/migration/testing.pl?package=wrapitk-python>
=== Packages with a new upstream version available:
amide 1.0.2 (Debian: 1.0.1-1)
beast-mcmc 1.7.2 (Debian: 1.6.2-2)
bedtools 2.16.2 (Debian: 2.16.1-1)
biococoa demos-1.0.0 (Debian: 2.2.2-1)
biojava-live 3.0.4 (Debian: 1:1.7.1-2)
bioperl-run 1.006900 (Debian: 1.6.9-1)
bitops 1.0-4.1 (Debian: 1.0-4.1-2)
bowtie 0.12.8 (Debian: 0.12.7-3)
catools 1.13 (Debian: 1.12-2)
cd-hit 4.6-2012-04-25 (Debian: 4.6-2012-04-25-1)
circos 0.62 (Debian: 0.61-1)
cufflinks 2.0.1 (Debian: 1.3.0-2)
epcr 2.3.12-1 (Debian: 2.3.12-1-1)
gbrowse 2.49 (Debian: 2.48~dfsg-1)
ginkgocadx 2.14.0.4972 (Debian: 2.12.0.4889-1)
gmap 2012-06-25 (Debian: 2012-06-12-1)
gnumed-client 1.2.1 (Debian: 1.1.17-1)
gnumed-server 17.1 (Debian: 16.17-1)
grinder 0.4.7 (Debian: 0.4.5-1)
igraph 0.6 (Debian: 0.5.4-2)
igv 2.1.20 (Debian: 2.0.30-1)
imagej 1.46r (Debian: 1.46a-1)
infernal 1.1~rc1-macosx-intel (Debian: 1.0.2-2)
insighttoolkit 4.1.0 (Debian: 3.20.1+git20120521-1)
jam-lib 301 (Debian: 0.0.r297-1)
jebl2 16 (Debian: 0.0.r6-1)
last-align 230 (Debian: 199-1)
libbio-graphics-perl 2.29 (Debian: 2.26-1)
libhmsbeagle 1.1 (Debian: 1.0-6)
libsbml 5.5.0 (Debian: 5.4.1-3)
libtecla 1.6.2 (Debian: 1.6.1-5)
mafft 6.903 (Debian: 6.864-1)
mcl 12-135 (Debian: 1:12-068-1)
mothur 1.25.1 (Debian: 1.24.1-1)
picard-tools 1.71 (Debian: 1.46-1)
pixelmed 20120629 (Debian: 20120508-1)
praat 5.3.19 (Debian: 5.3.16-1)
primer3 2.3.4 (Debian: 2.3.2-1)
pvclust 1.2-2 (Debian: 1.2-2-1)
python-biopython 1.60 (Debian: 1.59-1)
qtl 1.24-9 (Debian: 1.23-16-1)
r-bioc-edger 2.6.8 (Debian: 2.6.1~dfsg-1)
r-bioc-limma 3.12.1 (Debian: 3.12.0~dfsg-1)
r-cran-combinat 0.0-8 (Debian: 0.0-8-3)
r-cran-epi 1.1.36 (Debian: 1.1.33-1)
r-cran-epir 0.9-43 (Debian: 0.9-38-1)
r-cran-epitools 0.5-6 (Debian: 1:0.5-6-1)
r-cran-evd 2.2-6 (Debian: 2.2-4-2)
r-cran-ggplot2 0.9.1 (Debian: 0.8.9-1)
r-cran-medadherence 1.03 (Debian: 1.02-1)
r-cran-proto 0.3-9.2 (Debian: 0.3-9.2-1)
r-cran-psy 1.1 (Debian: 1.0-4)
r-cran-randomforest 4.6-6 (Debian: 4.6-6-1)
r-cran-rocr 1.0-4 (Debian: 1.0-4-3)
r-cran-surveillance 1.2-1 (Debian: 1.2-1-4)
r-cran-vegan 2.0-4 (Debian: 2.0-3-1)
r-other-bio3d 1.1-4 (Debian: 1.1-4-1)
r-other-mott-happy 2.3 (Debian: 2.1-7)
raster3d 3.0-2 (Debian: 3.0-2-4)
seaview 4.3.5 (Debian: 1:4.3.3-3)
sofa-framework 1.0-rc1 (Debian: 1.0~beta4-7)
sra-sdk 2.1.10 (Debian: 2.1.7a-1)
staden-io-lib 1.12.5 (Debian: 1.12.4-1)
tifffile 20120606 (Debian: 20120421-1)
tophat 2.0.4 (Debian: 2.0.3-1)
velvet 1.2.07 (Debian: 1.2.03~nozlibcopy-1)
=== Packages with lintian errors and warnings:
- beast-mcmc (0 errors, 8 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#beast-mcmc>
- bedtools (0 errors, 40 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#bedtools>
- bioperl-run (0 errors, 16 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#bioperl-run>
- catools (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#catools>
- cd-hit (0 errors, 11 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#cd-hit>
- circos (0 errors, 4 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#circos>
- freemedforms-project (9 errors, 10 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#freemedforms-project>
- infernal (0 errors, 3 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#infernal>
- jam-lib (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#jam-lib>
- jebl2 (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#jebl2>
- libbio-graphics-perl (0 errors, 15 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#libbio-graphics-perl>
- libhmsbeagle (0 errors, 18 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#libhmsbeagle>
- picard-tools (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#picard-tools>
- pvclust (0 errors, 3 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#pvclust>
- qiime (0 errors, 2 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#qiime>
- r-bioc-edger (0 errors, 2 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-bioc-edger>
- r-bioc-limma (0 errors, 5 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-bioc-limma>
- r-cran-medadherence (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-cran-medadherence>
- r-cran-proto (0 errors, 24 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-cran-proto>
- r-cran-randomforest (0 errors, 2 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-cran-randomforest>
- r-cran-rocr (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-cran-rocr>
- r-cran-surveillance (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-cran-surveillance>
- r-other-mott-happy (0 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#r-other-mott-happy>
- sitplus (0 errors, 10 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#sitplus>
- sra-sdk (0 errors, 77 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#sra-sdk>
- staden-io-lib (0 errors, 22 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#staden-io-lib>
- tophat (0 errors, 17 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#tophat>
- velvet (2 errors, 1 warnings)
<http://lintian.debian.org/maintainer/debian-med-packaging@lists.alioth.debian.org.html#velvet>
------------ interesting stuff probably ends here ------------
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