[Debian-med-packaging] Bug#688684: ncbi-blast+: trying to overwrite '/usr/bin/seedtop', which is also in package blast2 1:

Aaron M. Ucko ucko at debian.org
Mon Sep 24 19:26:36 UTC 2012

# Bcc-ing control at bugs
severity 688684 serious
clone 688684 -1
reassign -1 blast2 1:
notfound 688684 2.2.26-3
found 688684 2.2.27-1

Patrice DUROUX <patrice.duroux at igh.cnrs.fr> writes:

> Version: 2.2.26-3
> I hope everything is in the subject. ;-)

Yes, though I presume you meant to report this bug against 2.2.27-1, not
2.2.26-3, in which the BLAST+ seedtop is a script (ultimately calling
blastn or blastp as appropriate) that ncbi-blast+-legacy ships in
/usr/share/ncbi-blast+/bin.  Thanks for pointing out that it wound up
becoming a separate binary and creating an effective conflict; we'll look
into the matter.

Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu

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