[Debian-med-packaging] R 3.0.0 and required rebuilds of all reverse Depends: of R
Dirk Eddelbuettel
edd at debian.org
Mon Apr 1 17:53:36 UTC 2013
Hi Andreas,
On 1 April 2013 at 19:11, Andreas Tille wrote:
| Hi Dirk,
|
| thanks for your continuous work on R. If you feel that the current
| point in time (freeze time) is no problem (from my perspective it is OK
| - just mentioning it) I think uploading the R packages maintained by
It's delicate. I too think it is ok, but I set off quite the storm of "what
on earth were you thinking" on debian-devel :-/
| Debian Science and Debian Med is fine. Please make sure you commit the
| changes to the according VCS (ACL permissions are set for DDs for both
| VCS).
Ok, wI may give that a try, and will certainly try to treat carefully.
Cheers, Dirk
|
| Kind regards
|
| Andreas.
|
| On Sun, Mar 31, 2013 at 11:45:15AM -0500, Dirk Eddelbuettel wrote:
| >
| > A new major release R 3.0.0 will come out on Wednesday April 3rd, as usual
| > according the the release plan and announcements [1].
| >
| > It contains major internal changes [2] and requires rebuilds of all R
| > packages. As I usually do, I started packaging pre-releases and rc
| > candidates [3] based on March 24, 27 and 30 snapshots.
| >
| > Michael Rutter, who tirelessly backports (most of) my Debian R packages to
| > Ubuntu, has also made builds of these R packages [4].
| >
| > As for unstable, we have an issue as essentially all reverse-dependencies
| > that are R packages will need to be rebuilt [5]. On testing, I get for
| > 158 packages from `apt-cache rdepends r-base-core | grep -c r-cran-`.
| >
| > I maintain the core set ("r-recommended") and a bunch of others which I have
| > rebuilt over the last two or three days:
| >
| > abind-1.4-0 quadprog-1.5-4
| > boot-1.3-9 Rcmdr-1.9-6
| > cairoDevice-2.19 RColorBrewer-1.0-5
| > car-2.0-16 Rcpp-0.10.3
| > chron-2.3-43 relimp-1.0-3
| > class-7.3-7 rgl-0.93.928
| > cluster-1.14.4 RGtk2-2.20.25
| > codetools-0.2-8 rJava-0.9-4
| > date-1.2.33 Rmpi-0.6-3
| > DBI-0.2-5 rms-3.6-3
| > digest-0.6.3 RMySQL-0.9-3
| > foreach-1.4.0 robustbase-0.9-7
| > foreign-0.8.53 RODBC-1.3-6
| > gdata-2.12.0 rpart-4.1-1
| > getopt-1.19.1 Rserve-0.6-8.1
| > gtools-2.7.1 rsprng-1.0
| > KernSmooth-2.23-10 Rsymphony-0.1-15
| > Hmisc-3.10-1 RUnit-0.4.26
| > iterators-1.0.6 sandwich-2.2-10
| > lattice-0.20-15 slam-0.1-28
| > latticeExtra-0.6-24 sm-2.2-4.1
| > lme4-0.999999-0 sn-0.4-17
| > lmtest-0.9.30 snow-0.3.12
| > lpSolve-5.6.7 spatial-7.3-6
| > mgcv-1.7-22 stabledist-0.6-5
| > MASS-7.3-26 strucchange-1.4-7
| > Matrix-1.0-12 survival-2.37-4
| > mvtnorm-0.9-9994 timeDate-2160.97
| > mnormt-1.4-5 timeSeries-3000.96
| > multicore-0.1-7 tkrplot-0.0.23
| > multcomp-1.2-17 tseries-0.10-30
| > nlme-3.1.109 urca-1.2-7
| > nnet-7.3-6 XML-3.96-1.1
| > polspline-1.1.7 zoo-1.7-9
| >
| > and I should get to these over the next day or two
| >
| > doMC-1.3.0 fPortfolio-2130.80
| > doSNOW-1.0.6 fRegression-2160.77
| > effects-2.2.4 fTrading-2160.77
| > fAsianOptions-3000.78 fUnitRoots-2160.77
| > fAssets-2110.79 gmodels-2.15.3
| > fBasics-2160.85 gplots-2.11.0
| > fBonds-2160.76 gregmisc-2.1.2
| > fCopulae-3000.79 hdf5-1.6.10
| > fExoticOptions-2152.78 int64-1.1.2
| > fExtremes-2160.78 its-1.1.8`8
| > fGarch-2150.81 misc3d-0.8-4
| > fImport-3000.82 nws-2.0.0.3
| > fMultivar-2152.77 rggobi-2.1.19
| > fNonlinear-2160.77 Rglpk-0.3-10
| > fOptions-2160.82 RQuantlib-0.3.10
| >
| > Based on a simple script (running on testing rather than unstable) I get the
| > following set of unique maintainers of related packages:
| >
| > Chris Lawrence <lawrencc at debian.org>
| > Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
| > Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
| > Dirk Eddelbuettel <edd at debian.org>
| > Julian Gilbey <jdg at debian.org>
| > Philip Rinn <rinni at gmx.net>
| > The Debichem Group <debichem-devel at lists.alioth.debian.org>
| >
| > and I am CCing everybody now to see if they could please rebuild the packages
| > within a week or so. Come next weekend we'll review and switch to direct
| > email pings.
| >
| > Comments, suggestions, ... most welcome. Please CC me on replies as I am no
| > longer subscribed to debian-devel.
| >
| > Cheers, Dirk
| >
| >
| > [1] http://developer.r-project.org
| > [2] See the NEWS file; big one is overcoming vector index index limit 2^31-1
| > [3] http://changelogs.debian.net/r-base (covers two of the three)
| > [4] See his blog at http://www.personal.psu.edu/mar36/blogs/the_ubuntu_r_blog/blog/
| > and his post to the r-sig-debian list
| > [5] All r-cran-* and r-bioc-* and ... package; embedding apps such as
| > rkward, postgresql-plr or cantor or may not need to be rebuilt
| >
| > --
| > Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com
| >
| > --
| > debian-science-maintainers mailing list
| > debian-science-maintainers at lists.alioth.debian.org
| > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
| >
|
| --
| http://fam-tille.de
--
Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com
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