[Debian-med-packaging] Bug#705139: Bug#705139: soapdenovo2: FTBFS on non-amd64: linker errors

[Olivier Sallou]

what is procedure to fix this ? I need to upload a new source (to remove
.a files).

Should I increase upstream version?

thanks

Olivier

On 04/10/2013 04:39 PM, Aaron M. Ucko wrote:
> Source: soapdenovo2
> Version: 223-2
> Severity: serious
> Justification: fails to build from source
>
> Hi, Olivier.
>
> Builds of soapdenovo2 on ia64 and kfreebsd-amd64 both failed with
> linker errors.
>
> The ia64 build failed with
>
>   /usr/bin/ld: skipping incompatible ./inc/libbam.a when searching for -lbam
>   /usr/bin/ld: cannot find -lbam
>   collect2: ld returned 1 exit status
>   make[2]: *** [SOAPdenovo] Error 1
>
> Please get rid of the prebuilt libbam.a (a DFSG violation!) and build
> depend on libbam-dev.
>
> The kfreebsd-amd64 build didn't reject that libbam.a outright, but
> reported undefined references to several bam* and sam* symbols, and
> for that matter to a handful of aio_* symbols, which I suspect you
> could resolve by linking against -laio from libaio-dev.
>
> Could you please take a look?  You can find the full logs on
> buildd.debian.org:
>
> https://buildd.debian.org/status/fetch.php?pkg=soapdenovo2&arch=ia64&ver=223-2&stamp=1365543888
> https://buildd.debian.org/status/fetch.php?pkg=soapdenovo2&arch=kfreebsd-amd64&ver=223-2&stamp=1365543478
>
> BTW, directing upstream's build system to indicate which commands it's
> actually running would make it easier to tell what's going wrong.
>
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-- 
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95

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