[Debian-med-packaging] Bug#731485: libgenome: FTBFS on !any-amd64 due to symbols errors

[Sebastian Ramacher]

Source: libgenome
Version: 1.3.1-4
Severity: serious
Justification: fails to build from source (but built successfully in the past)

libgenome fails to build everywhere except on any-amd64 due to missing
symbols:
| dpkg-gensymbols: warning: debian/libgenome-1.3-0/DEBIAN/symbols doesn't match completely debian/libgenome-1.3-0.symbols
| --- debian/libgenome-1.3-0.symbols (libgenome-1.3-0_1.3.1-4_i386)
| +++ dpkg-gensymbolspxGnOn	2013-11-07 13:23:33.266730708 +0000
| @@ -646,20 +646,24 @@
|   _ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev at Base 1.3.1
|   _ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev at Base 1.3.1
|   _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
| - _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE7reserveEm at Base 1.3.1
| + _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE7reserveEj at Base 1.3.1-4
| +#MISSING: 1.3.1-4# _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE7reserveEm at Base 1.3.1
|   _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
| - _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE5eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE at Base 1.3.1
| +#MISSING: 1.3.1-4# _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE5eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE at Base 1.3.1
|   _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
|   _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
| - _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE7reserveEm at Base 1.3.1
| + _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE7reserveEj at Base 1.3.1-4
| +#MISSING: 1.3.1-4# _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE7reserveEm at Base 1.3.1
|   _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_ at Base 1.3.1
|   _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
|   _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
| - _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE7reserveEm at Base 1.3.1
| + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE7reserveEj at Base 1.3.1-4
| +#MISSING: 1.3.1-4# _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE7reserveEm at Base 1.3.1
|   _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
| - _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE5eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE at Base 1.3.1
| +#MISSING: 1.3.1-4# _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE5eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE at Base 1.3.1
|   _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
| - _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE7reserveEm at Base 1.3.1
| + _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE7reserveEj at Base 1.3.1-4
| +#MISSING: 1.3.1-4# _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE7reserveEm at Base 1.3.1
|   _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_ at Base 1.3.1
|   _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPS2_S4_EERKS2_ at Base 1.3.1
|   _ZNSt6vectorISsSaISsEE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPSsS1_EERKSs at Base 1.3.1
| @@ -672,8 +676,9 @@
|   _ZNSt8_Rb_treeISsSt4pairIKSsPN6genome12gnBaseSourceEESt10_Select1stIS5_ESt4lessISsESaIS5_EE16_M_insert_uniqueERKS5_ at Base 1.3.1
|   _ZNSt8_Rb_treeISsSt4pairIKSsPN6genome12gnBaseSourceEESt10_Select1stIS5_ESt4lessISsESaIS5_EE4findERS1_ at Base 1.3.1
|   _ZNSt8_Rb_treeISsSt4pairIKSsPN6genome12gnBaseSourceEESt10_Select1stIS5_ESt4lessISsESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E at Base 1.3.1
| + _ZNSt8_Rb_treeISsSt4pairIKSsSsESt10_Select1stIS2_ESt4lessISsESaIS2_EE17_M_insert_unique_ESt23_Rb_tree_const_iteratorIS2_ERKS2_ at Base 1.3.1-4
|   _ZNSt8_Rb_treeISsSt4pairIKSsSsESt10_Select1stIS2_ESt4lessISsESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 1.3.1
| - _ZNSt8_Rb_treeISsSt4pairIKSsSsESt10_Select1stIS2_ESt4lessISsESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 1.3.1
| +#MISSING: 1.3.1-4# _ZNSt8_Rb_treeISsSt4pairIKSsSsESt10_Select1stIS2_ESt4lessISsESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 1.3.1
|   _ZNSt8_Rb_treeISsSt4pairIKSsSsESt10_Select1stIS2_ESt4lessISsESaIS2_EE7_M_copyEPKSt13_Rb_tree_nodeIS2_EPSA_ at Base 1.3.1
|   _ZNSt8_Rb_treeISsSt4pairIKSsSsESt10_Select1stIS2_ESt4lessISsESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E at Base 1.3.1
|   _ZStplIcSt11char_traitsIcESaIcEESbIT_T0_T1_ERKS6_S8_ at Base 1.3.1
| dh_makeshlibs: dpkg-gensymbols -plibgenome-1.3-0 -Idebian/libgenome-1.3-0.symbols -Pdebian/libgenome-1.3-0 -edebian/libgenome-1.3-0/usr/lib/libGenome-1.3.so.0.1.3
|  returned exit code 1
| make: *** [binary-arch] Error 1

For a full build log see
https://buildd.debian.org/status/fetch.php?pkg=libgenome&arch=i386&ver=1.3.1-4&stamp=1383830620.

Regards
-- 
Sebastian Ramacher
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