[Debian-med-packaging] (Further) help with C++ needed

[Andreas Tille]

Hi again,

On Thu, Dec 12, 2013 at 06:41:23PM +0100, Andreas Tille wrote:
> On Thu, Dec 12, 2013 at 12:16:54PM -0500, Joseph Gunn wrote:
> > Or, possibly, in more than one patch.
> 
> I can confirm that this was a remaining chunk of an old patch that
> applied to the new version.  The hint was helpful and I hope that I
> get it builded after detecting this potential source of problems.

After having removed the chunks of old patches which actually were
responsible for the previously reported problem I was running into new
errors.  The problematic files are not affected by the patches any
more (at least not directly) and even if I deactivate all old
patches via

diff --git a/debian/patches/series b/debian/patches/series
index cb63ae8..e3f47c1 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,5 +1,5 @@
 0001-missingSigned.patch
-0008-Added-MAX_PENALTY-option-to-bond-order-assignment.patch
-0009-Fixed-a-bug-in-the-AssignBondOrderProcessor.patch
-0010-Fix-compilation-of-FTPBondOrderStrategy-Fixes-451.patch
+#0008-Added-MAX_PENALTY-option-to-bond-order-assignment.patch
+#0009-Fixed-a-bug-in-the-AssignBondOrderProcessor.patch
+#0010-Fix-compilation-of-FTPBondOrderStrategy-Fixes-451.patch
 0101-cmake-syntax.patch

the problem remains.  Could some kind soul try to check out

   git://git.debian.org/git/debian-med/ball.git

and have a look into things like:


...
[ 20%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.o
In file included from /tmp/buildd/ball-1.4.2/include/BALL/common.h:36:0,
                 from /tmp/buildd/ball-1.4.2/include/BALL/CONCEPT/property.h:11,
                 from /tmp/buildd/ball-1.4.2/include/BALL/FORMAT/PDBFile.h:9,
                 from /tmp/buildd/ball-1.4.2/source/FORMAT/PDBFileDetails.C:9:
/tmp/buildd/ball-1.4.2/include/BALL/COMMON/logStream.h:165:22: warning: attribute ignored in declaration of 'struct BALL::LogStreamBuf::StreamStruct' [-Wattributes]
   BALL_EXPORT struct StreamStruct
                      ^
/tmp/buildd/ball-1.4.2/include/BALL/COMMON/logStream.h:165:22: note: attribute for 'struct BALL::LogStreamBuf::StreamStruct' must follow the 'struct' keyword
/tmp/buildd/ball-1.4.2/source/FORMAT/PDBFileDetails.C: In member function 'virtual bool BALL::PDBFile::interpretRecord(const BALL::PDB::RecordMTRIX3&)':
/tmp/buildd/ball-1.4.2/source/FORMAT/PDBFileDetails.C:902:71: error: no matching function for call to 'BALL::NamedProperty::NamedProperty(const char [12], boost::shared_ptr<BALL::CrystalInfo>&)'
    current_protein_->setProperty(NamedProperty("CRYSTALINFO", temp_ptr));
                                                                       ^
/tmp/buildd/ball-1.4.2/source/FORMAT/PDBFileDetails.C:902:71: note: candidates are:
In file included from /tmp/buildd/ball-1.4.2/include/BALL/FORMAT/PDBFile.h:9:0,
                 from /tmp/buildd/ball-1.4.2/source/FORMAT/PDBFileDetails.C:9:
/tmp/buildd/ball-1.4.2/include/BALL/CONCEPT/property.h:191:3: note: BALL::NamedProperty::NamedProperty(const BALL::NamedProperty&, const string&)
   NamedProperty(const NamedProperty&, const string& name);
...


which happens repeatedly.


Many thanks in advance

        Andreas.


-- 
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